Array 1 995047-996844 **** Predicted by CRISPRDetect 2.4 *** >NC_009483.1 Geobacter uraniireducens Rf4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 995047 29 100.0 32 ............................. TTGTTTTAGCATGTGTAATCACCTTCTCGTCA 995108 29 100.0 32 ............................. GTGCAAGTGGTGAAGAACATCTGGAAATGGAA 995169 29 100.0 32 ............................. ACCTGTGCGGGATGCAGTGGCCTGTGCCTTGT 995230 29 100.0 32 ............................. ACGTTGGTCTTTGCAGTTCTTTCTGGCCAACA 995291 29 100.0 32 ............................. GCCGGCCGTCTTCTGGGTGACGAGAAAATACT 995352 29 100.0 32 ............................. GCATGGAGTCGTTGCGGACAGCCGCCGACAGG 995413 29 100.0 32 ............................. GAATGCTATTTCTTTTTTTCCTTTCCGAGAAA 995474 29 100.0 32 ............................. ATGATCTGTCTGATGCGGAAATCCCGCAGGAA 995535 29 100.0 32 ............................. ATTTAGTCTCTCCTGCAGCAAATGTCCCGGAG 995596 29 100.0 32 ............................. ACGCGCCCGCCCGACATGACTGAGAAAAACGT 995657 29 100.0 32 ............................. AACGACCGCAATTTCCAAGTAGGGGATGAACT 995718 29 100.0 32 ............................. GTGGTTCGCCGGTTTAACAAGCGCTCGGACTC 995779 29 100.0 32 ............................. CATGGAGCACAGCGAAGAAGCATTAATCGACA 995840 29 96.6 32 ............................T CAGAATATGGAGATAGCCATGATGAGACAGAC 995901 29 100.0 32 ............................. CCACACATTGTTTTCGACATAGCGGGCATGAG 995962 29 100.0 32 ............................. AACCCGGTCGTCATGATAGGCATGGAGGACAT 996023 29 100.0 32 ............................. GTTCCCCTGTGTCCCCAGGGTTTGCTTCATTG 996084 29 100.0 32 ............................. TTTGATTATATCTTGTTCTGCCATGCACTGAT 996145 29 96.6 32 ............................A GGAGACAAACCATGAACGCAAAAAATCAAATC 996206 29 100.0 32 ............................. TGCGGTGTGTGGTGCCCGGTGGTCTGTCAATA 996267 29 100.0 32 ............................. GGACCGCGGCGAGCCGATTACCCCGGATGAGC 996328 29 100.0 32 ............................. AGTCTGCGGCGGCGGATCGTGCTGTACGTGAA 996389 29 100.0 32 ............................. TCGGATCGCCGTACGCTCCGGTGCCGGTTAAT 996450 29 100.0 32 ............................. GCTGACGGGCGGGGTTTCGTCCCCGTCCAGCC 996511 29 100.0 32 ............................. GGCGGGGTAATTGATTGGCAAGATGAAGAGCT 996572 29 96.6 32 .......T..................... AGTTCTCCTCCAGCGATTTGCTGGCGGAGGCA 996633 29 100.0 32 ............................. TCTGCGGGGCTCTACCTTGGATATTTCCGTAT 996694 29 100.0 32 ............................. CCGGGCGGGTGCGCTTTGTCGTTATAATGTTT 996755 29 100.0 32 ............................. CGCGCCCGCTGGCCGTGGAACGCGGATCGTTG 996816 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 CTGTTCCCCGCACGAGCGGGGATGAACCG # Left flank : GCCCCGGTATGCAGCTAAACCATATATCTGTCAACTAGTTACGGCCAATCTCGCTAGTGCGAAAGTTGAGTCATATAACTCAAAGAACTCAAAGAACTCATATAACAAATAGGAGTGATAAAGATGCTGGTGATCGTGGTTGAGAATGTGCCGCCGCGGCTGCGGGGGAGGCTGGGGCTGTGGCTGGTGGAGGTGCGGGCCGGGGTCTACGTGGGCAAGGTCTCGCGCCGGGTACGTGAAATGATCTGGGACAATCTGGAGAAGGGAATAGATAACGGCAATGCCGTGATGGTCTGGAGCAGCAACACCGAGTCGGGGTTCGATTTTATGACCCTGGGGGCCAACCGGCGGATACCTGTTGAGATGGACGGGATCAAGCTGGTTTCGTTTCTGCCGGAGGAGGCGGCAGAGGGTAAAGAAAAGCCTTTTTGAAGGGTGAAAAAATCGGTGGAATTTATGCAGTTGAATTTGCTTAATGATTTTGAGGAAGTAGAGGAAGT # Right flank : GGCGTTATCGGCTGGGGGGGCAACGTGCGCAGCGGCCTGCCGCAGATGCTCTCCCTCTATCCGCCGGCTGGCAGTGCGCCTCTACCCTCGGAAACTGCCACCATGTGGCAACTGCACGGGGTTGACTGCTCCGGCCTTTTATACGAGGTGACCGGCGGCTTCACCCCGCGCAACACCAGCGCCCTCATCGGTTACGGCAAGGGTGTCGAGATCGCCGGCTTGAGTCCGGAGCGGATCATCGAGCGGGTGGAGCCGCTCGACCTGATCGTCTGGCAGGGGCATGTGATCATCATCCTCGACCGGGAACGGACCATAGAGAGCCGTCTGGATTGCGGCGGTAAAAACGGCGGGGTGGTGGTCCGACCGCTTCAAGAGGCCCTGGCAGGGGTGATGACGGGGCGGATGGCGGTGGATGACTACGGGGATGCCGCGAAACTGGGAAAGAAGGGGTTCGTCATCAGGCGCTGGTACGGCAGGTAAGGGACGTTTTCACGGCGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3158985-3158805 **** Predicted by CRISPRDetect 2.4 *** >NC_009483.1 Geobacter uraniireducens Rf4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3158984 37 100.0 34 ..................................... GAAAGGAGACAGCATGATGCGCAACAGGTTACTG 3158913 37 100.0 35 ..................................... CTCGGCTACCATGACTACGAACGTAAACTGGACGA 3158841 37 97.3 0 ........................C............ | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 99.1 35 GAAGCGCCCGCCTTCAATGGCGGGTGAGGATTGAAAC # Left flank : TCAGGGGGATTTCTTCAGATTGATCGGGGGTAACCATGTGGATAGTCGTCTGTTATGACGTGAACACTGAAACACCAAAAGGGCGGAAACGTTTGCGCAGGGTGGCACAGGTATGCAAGAACTACGGCCAACGGGTGCAGAAGTCGGTGTTCGAGTGCCAGGTGAATGAGATGAAGTTTGAGGAACTGCGCCGGAAACTTCTGAGAGAAATCGTCAAAGAAGAGGATAATCTGCGGCTTTACCGCCTTACTGAACCTAGGGATGATCATGTGGAGACCTACGGTTTGAGTCGCACGATATTTTTCGAGGAGCCGTTGATTGTCTGACGCGAACCTGATGCACTGGCAAAAACATGGGCGGTTCGCGGATAGATATTTCGTTGATTTTAAACTATTTTTCAGGAGAGTGATGAGCCTCTGGCCTTGCTCAGGCCCCAAATTCCCTGGTTCGCAGAATCGGGGATGTAAGTTGCTGTAATCTGTCGCCAATAAATGGGGACA # Right flank : ATGGTGCGCATGGCCTCGGCGATCTTCCCGTATTGAAGCGCCCGCCTGCTACGCGAAACGAGGGCGGCCACATGGGGCCGCCCCTACGGTGATTTTATGACCTATAACCCTGACATTCACCACCGTCGTTCCATCCGTCTGCGGGAATACGATTATTCCTCGAACGGCGCGTATTTCGTCACGATATGCGCGCAGGGGCGGGAATGTTTGTTCGGCGATATTCTGGATGGTGAAATGCGCCTGAACGATGCGGGGCGGATGGTGGCGGAATGGTGGGTAAAATTGCCGGGGAAATTTCCGAATGTGGCATTGGATGAATACTTCGTCATGCCCAACCATTTCCAAGGCATCATTTGCATCGTAGGGGCGGGGTTCCCCCGCCCTGTTTTTGCCAATGACGATGTTGGGGCGGGGTCATCCCGCCCTGTGTTTGCCAATGATGACGTAGGGGCGGGGTTTCCCCGCCCGCTTTCGCCGGAAAATCAGAACCTGGGCGGGGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCGCCCGCCTTCAATGGCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.90,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA //