Array 1 659080-657709 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZIL01000001.1 Escherichia coli isolate F2_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 659079 29 100.0 32 ............................. GCTAAATGCAATAGGTATTGAGTGGGAAATTA 659018 29 100.0 32 ............................. AATTTGTTTTGGCTAATGTGCCCGGCCTTGAT 658957 29 100.0 32 ............................. TCGGGGCCGTACCTACAGCGCGGAAGGTGAAC 658896 29 100.0 32 ............................. CTTGCTGCGACTGCCTGGTACAGCATCTATGA 658835 29 100.0 32 ............................. CAGTTACGGGATGCCTGGCGTTATTCGCCCGG 658774 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 658713 29 96.6 32 ............................T ATTATGGTTGATCTGTCTGTACAGAATGAGGC 658652 29 100.0 32 ............................. CTGGAGCTGGAAAAACCGGAGGTGTTAGATCC 658591 29 100.0 32 ............................. CAATGTTTTATTTTCGAATAGCACTTTTTGCA 658530 29 100.0 32 ............................. TATCCAAATGATAAATAGTGACTCATAAAAAC 658469 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 658408 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 658347 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 658286 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 658225 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 658164 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 658103 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 658042 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 657981 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 657920 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 657859 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 657798 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 657737 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 685542-684781 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZIL01000001.1 Escherichia coli isolate F2_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 685541 29 100.0 32 ............................. AGTGTTGCGGAGGTTGAGTTGAGCACCTATCC 685480 29 100.0 32 ............................. GTGATGCCGAACACGCCAAATATCTCGCAAGC 685419 29 100.0 32 ............................. CGAAAAAAGGCGCGCTCAAAAACGGTGCGATC 685358 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 685297 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 685236 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 685175 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 685114 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 685053 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 684992 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 684931 29 96.6 32 .....T....................... GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 684870 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 684809 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATACCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //