Array 1 93257-92643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTP010000006.1 Francisella tularensis subsp. novicida strain F1108 novicida_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 93256 36 100.0 29 .................................... TTTTTGTGTATGTAATGTAGCTTTCTTTA 93191 36 100.0 28 .................................... ATGGTTGTCTAGGTAGTGTAAATTCCAT 93127 36 100.0 29 .................................... AAGCAGCTGCTTATGTTTTGACAATCAAA 93062 36 100.0 28 .................................... TCAATAAAAAATGCCCATTGACTAACGG 92998 36 100.0 30 .................................... ATATTGTTTTAAATCGTCGCTATCAGCAAA 92932 36 100.0 27 .................................... CAAATATAGCTAACTTTTGGAACTCAG 92869 36 100.0 29 .................................... TCTATTATGTTTCCTGAAAGAGTAGTTTT 92804 36 100.0 28 .................................... GCCACAAATACTACAAAAAATAACTTAA 92740 36 100.0 27 .................................... CTAGGCTTGGAATATCTGTCAGAGATA 92677 35 77.8 0 ......................GC-....ATATT.. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 28 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGGCAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTCTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAGGATGTGATAAAATATGGTTATGCTATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACCACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TGATTTCTAAATTAGAATTTGCTAATATAACACTACTTGAGAATTTATTGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATCTATTGCGGTGATAAATAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGACCTACAAAAAAAAGAGAAGGTCAAGCTAATAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 43469-41555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTP010000007.1 Francisella tularensis subsp. novicida strain F1108 novicida_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 43468 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [43459] 43397 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [43370] 43189 37 94.6 35 ........C...A........................ TTTATTGAGCGACAAGCAGAAAGGGGAAGAAAGAG 43117 37 97.3 35 ............A........................ TCAAACATTTTACCGCTATATTTAGCTTCTATGAT 43045 37 100.0 37 ..................................... CGAATTTTAACATACCAGCATTTATTTTTTCTAATAA 42971 37 97.3 35 ............A........................ TTTATTGAGCGACAAGCAGAAAGGGGAAGAAAGAG 42899 37 97.3 37 ............A........................ ATCTAAGTTTGTTACATGCTTTCTTGTTTTAATTCTT 42825 37 97.3 36 ............A........................ TTGAAATATTTAAAGATAACATTAGGCTAAATACGG 42752 37 100.0 35 ..................................... CAAGCTTTCTTGGGAGACCAGTGGAAATTTCAGGA 42680 37 100.0 35 ..................................... CAAATAAAGCCTCATGATAACGAGATTATTTGGGT 42608 37 100.0 36 ..................................... TAGCAATGATTATACTTTCCGAGTTACCAATTAGAT 42535 37 100.0 36 ..................................... GAAGTTCGTTAAAATTAAGTTGCTTACACATAATCT 42462 37 100.0 34 ..................................... ATTTTAAATAAATGAAGTAAACTAATACTTGCTA 42391 37 100.0 35 ..................................... TGTAGTAAGCAATTATAATAATTTCTTTAGCTTGT 42319 37 100.0 35 ..................................... TTACAAACAGAGTATCACGAACACTTAAATAGAGC 42247 37 100.0 37 ..................................... AAACGATGCTTTAAAGTCTGTTTGAGAGTCTTGCTTA 42173 37 100.0 35 ..................................... ATCTCAAAAGCAGCTCTTTCGCGTGTAATATCGTT 42101 37 100.0 35 ..................................... GTAGTAATTATGAAGTCATCTTAGAGAGTGCTTTA 42029 37 100.0 38 ..................................... TTTATTTGATACGTATTAGTAGCCGCGTCAAGAATACT 41954 37 100.0 36 ..................................... TAGTACATAGTACCCAAGAACCGACGAAGTTTCTTA 41881 37 100.0 36 ..................................... CTATCTAAGAGAACTTACAAGACAAGAGAAAATACT 41808 37 100.0 36 ..................................... TTATTCTACAGAAGTAGACTATACAAATTTGCATTA 41735 37 100.0 34 ..................................... ATGCTTATGCGAGTAATCCTAGCTGGTATATTGA 41664 37 100.0 36 ..................................... TAGAGATGAAATTCAAAGGGTAACAAGTCAAACTTT 41591 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 25 37 97.6 41 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAACTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGTTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGTTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGTTGCAGATGAATCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //