Array 1 34694-33055 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLO01000012.1 Haloferax mediterranei ATCC 33500 contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 34693 30 100.0 54 .............................. CACGTCAGGTCGTGTGCCTTGCGCGTTGCGTTGACTTCCGAGCGCACGCTCTTG 34609 30 100.0 34 .............................. GGACCCAAAACCCCAATCGAAGACGCGACAGTCG 34545 30 100.0 36 .............................. GTGTACGAGGTCGCCCACGACCGTGCCGTCGATGGT 34479 30 100.0 36 .............................. CACGGATGGACGGCTAAGACGTAGTCGCCTTCGACA 34413 30 100.0 36 .............................. GCGGACGGTGGTTCGGAATGACTGACTCTGCTAAAT 34347 30 100.0 35 .............................. GGAGGTACAAAACGAGTCACAAAATCTAACGTCGG 34282 30 100.0 37 .............................. GGGGAGTGGGAGGTGTCGCAGACCCGACGGCCCGCCG 34215 30 100.0 36 .............................. TTCGACGCGAAGGTCGTACACCTGCCCGATTTGGAC 34149 30 100.0 35 .............................. GAAGATTATTGAGGGAGTAACGTATGAACCATCTA 34084 30 100.0 38 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGTC 34016 30 100.0 38 .............................. GACCAGACCCATGTACTCCGCAGACCCGGCCTTCGCGT 33948 30 100.0 35 .............................. CGCGAATGCAACAATCGGCGTTGCATGCATGACGT 33883 30 100.0 37 .............................. TTGACGAGGGGACAATCCATGAAATCCATGTGAAATT 33816 30 100.0 36 .............................. ACGGTCTCGAAATGTTGCCCGACCGGAACGCATATC 33750 30 100.0 37 .............................. CGGTCCTCCGGCAGATTGGGGAGATTTATCCAGAGGT 33683 30 100.0 38 .............................. ACACGGCATGGGGGGAAGGATTTGGGGGGGTTGTGAGA 33615 30 100.0 34 .............................. GTCTGGAAGCTGGCCATGTTGTTCTACAACGCTT 33551 30 100.0 36 .............................. TACGTTGGGGCAGACCCCAATTCCGGAGGGTCGCAG 33485 30 100.0 34 .............................. CGTGACAGTCTTCGGGCCGGTCGACGACCAGGGC 33421 30 100.0 35 .............................. TTCTGGACGCACCTTCTTCACGTCGTAAACCCCGG 33356 30 100.0 34 .............................. AGCAGTCAAATACCGAACTCGCGCTTGAAAATCT 33292 30 100.0 35 .............................. GCGGAAATCGTAGTCGAACCCACGCCCGACGACGA 33227 30 100.0 36 .............................. GTGGACGGGGACGAGTCTATCACCATCGACAGCACC 33161 30 100.0 47 .............................. GGGCGCGCCAGTGAATTTCGTCGTCATGTTACATTCAAGAGCAACAG 33084 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 25 30 100.0 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ATCACAGCGTACCACCGATATCTAAACGAAGCGGCTGCACTCCACTACAACGATGGGATGTTCGACGAGTTCCTCCGATACGGCGACCAAGACAACTACGCTGGTCCCGATGCCCTTTCGAGATGGTACCGGCGGAACCTCCGGATGATTCACAACATCTGGCGGGCCGTGGACGAAGACACTAACCGTGTTTGCTTCGTCGTCGGCTCCGGACACGTCCATATTCTCCGGCAACTCCTCACCGAGTTCCCGCAGTTCTGCCCCGTGAGTCCGCTTCCGTATCTGCCCCGTGGTGAGTAAGCGGGTGTTGAAGATGGTGACGAGTGGATAGTAGTTGACTCGGGAGGTTAGGTGTGGTTGGTGGGTTCGAAGGGGGTGTCCGGATTGGCCGGATAGGCATTTCCGTCGACCCCCCGGGGGGTTGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGCGAACCGCCTGTAGAGTACTTGTGGCACTCAAATCGGCCATG # Right flank : TCTGGGTCGACCGGCATCAACAGCTCGGTCTACGGTTACAGACGAACGCCTCTGTTTAAATCCTCAGTAATTGATACAAACTGTGTGCTGAATATAGAGGGTGCATTCAGCAACTCCACGACTGGCTGTAGGAGACTCTGATGGAGAAGCACGACTGATCGTGCTGAAATCGGAGTAGGATACCAACCTCGGGTTATTTCAGGACGTGATACATTGCGAAACTGGGAATGCGGGTATTCAGATGGGTGGTTAACCGATACAGACAACTCGAAAATATGGCGTCACACCCTGCAGTAGCTGGAGGACCTGAGATTGCAGTTGACCTGACTATCGTACTGGGTCTTTGGTGCCTCTGGGTACTGATAAGTAGGGGTGTAGGTGCGGCTTTAGATTTCACTCCACTCATACTCATCCCACTTGGTACCGCTATTGCGTTTCTGCTCATTGATACAGTAGTTAGTCGGGTATTTTGACAGAGGCACGATGCAAACAGTGGACTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2052-709 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLO01000004.1 Haloferax mediterranei ATCC 33500 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2051 30 100.0 34 .............................. GAACAGGATGGCGAACGCGGTGTCTGCGCCAGTT 1987 30 100.0 35 .............................. CACGACAATCAAGTCTGGTTGCATGGCGACACGGA 1922 30 100.0 37 .............................. CTGTGGCCTCCAGCGGCCGTCAGACAGTCGCATCCGA 1855 30 100.0 36 .............................. AAGAAGCCGCTCGCCGTCCTCGATGACGGGCGGGCG 1789 30 100.0 36 .............................. GACAAGACTCGCGACGAAGCCGAGTCGAAACGCCGC 1723 30 100.0 36 .............................. CTCTTTATCCCTCCTGCCCGAATGTCTACGAATATC 1657 30 100.0 36 .............................. GAACCCACTGGTGAAGAAAAAGTTGTAGAGACCCTA 1591 30 100.0 37 .............................. ACGACAATCAAGTCTGGTTACATGGCGACACGGATGG 1524 30 100.0 36 .............................. TTCCACAACGTCGGGGAGGGCGAAATTAGCCAAGCA 1458 30 100.0 35 .............................. TCCCGCTGGGGATGTCGGGAGTGCCGGGCGAGCCA 1393 30 100.0 34 .............................. CCCGGCCCGTTGCCCCCCACGGCAATCGTCTGCT 1329 30 100.0 34 .............................. CGTCTGTGTTATTCTGTGCGTCTGCCGCGACAAC 1265 30 100.0 35 .............................. ATTGCCTGTCCCCGTCGTGTAATCAACTCGGAATC 1200 30 100.0 35 .............................. GAGATGTGCGACCGCGGCGAAATGAGCAGTTCGTG 1135 30 100.0 37 .............................. GCGACATGGGGACCGTCGAGAACGCGCTCTATGGGGA 1068 30 100.0 37 .............................. CGAGGGTCCCGGTGTCGAGAGGACCGGGACGGACGGA 1001 30 100.0 38 .............................. TCGGTAATCTGGGAGGCGTCAGTCTCGGCCGAGTAATC 933 30 100.0 36 .............................. CTCGCCATCGCCGCGAACTCGGTCCTCCTCGGGGTG 867 30 100.0 35 .............................. AAGCCTTGAGAGTGTCTGTTGGTATGATGAATGTT 802 30 100.0 34 .............................. AAGTAGACCGCGCTCAGTTACGACAGCTGCTCGA 738 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ACCCAAGCCATAGCAGATTAAAATAATTCGAGTACTGTCCGTTCCAGATGTTGATGGTAAGTGAATATTCCCAACCACTCCTCTGCCAATGGCTTCTTTTTCCTGGACGCCTTCACTAGTCACATTCGTCCTTCCTGCTTGACCACCACCGAGAGCTACCAACACGACCCCGATAATTGCGGTCAGGACGAGATATAACCCAGAGTGTGTCGTTAGATAGATAGCACCGACAGTAATGATTCCCGCGAGAATCGTATAGATGAGGACTGTTACTGCGACTACTCGCTTGTCCATGTCATAAGTAGAACGACAGTTAGTTTAATTTTTATCATTTTGAGGAATTGGTGTATCGCGCGTCCCGGTGTTCTCGGAAGTCCGTTACGTGGGTCTTGACCTGAATTTCCGTCGACCCCCCGGGGGGTTGGGGGGTATTGGGGGTCGACGGAAACTGTTGAGTGGGAGTAGTGTGTAGGAGGCTGTATACCCTCGAATCGGGCATG # Right flank : ACGATGATCTCGCCAGTCTGCAGCGTTACATTGGGTTACAAACGAATCTTTTCTCGTGAGGACTTCCGAAACTAACCTCTTCCCGGAACTAGTCGAAGGTCAAACAGTAACTACAGGGCGTGAGTGTATCAACTCGCCGCTATTCAACGACCTCGAATGGCGCGGCGAGTGCGATGCCTGCATCATGTTCGGAGAACCCCCAGTAAATGAATCGGTACGTGGCTGGTGTGTGTGCCGTACACCGTTGGAACGGACCTGAAAATTCGTTAGCGCTAAGTGTCATTTCCCATCGGAATTCTTCACCAGGCTCCAGCACTCGCTGAGACGGTGACCACTCATATTCTTCGGGCACACCGATGGTATTCCGCCACGTGTCGTCAGAGCTTAACCGCTGAATCATATAGCGCGGTTTCCCAAGTGTGGTGAGTGGGTCAGTGGACTCGTTTGTGAGTGTCGCCACGAATTGCTCACCTGGCGAAATAGATTGTGGCACCGTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 16454-15371 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLO01000005.1 Haloferax mediterranei ATCC 33500 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16453 30 100.0 36 .............................. TCCCGAGGAGTCGTCCGCGTCGACGCGGATGAGTTG 16387 30 100.0 35 .............................. GTGCATCGCCGAGCGGTCGTTCGGGTCCATCTTGT 16322 30 100.0 34 .............................. TGATGATGGGTCCATCACCACCCACCCCCTGCGT 16258 30 100.0 35 .............................. AAGAACCATTGACTGGAACGCAACGACGCATCCTC 16193 30 100.0 37 .............................. TGGGGATGTCTCGGACAATCTCTGACCGTGTGATAAA 16126 30 100.0 37 .............................. TGACTGGAGAGCGTGCAACGGCCTATAAGATAGACCT 16059 30 100.0 35 .............................. TCAACTGTCCCCTTGTCCGCTTCGTCGCCTGAGCG 15994 30 100.0 36 .............................. GTACTTCTCTCCATCTTCGAGATTAGTGACGTTCAG 15928 30 100.0 36 .............................. GTACTAAAGTGTGGCACGGAAAACACGAACAGCCCT 15862 30 100.0 34 .............................. CCATCGTGGGTTGATTCGATACTCGACCGCAACG 15798 30 100.0 35 .............................. TCGACTTGCGAGATAATGTCGTCTTGCTCGGTGGT 15733 30 100.0 35 .............................. AAATATGATACCACCGAACCCGTTTGTAGCGCCCA 15668 30 100.0 37 .............................. GTTGGTGCCCGCGCGGTTGGCGTAGGCAAGGTTCGTG 15601 30 100.0 36 .............................. TGAGGTCTTCCCTAACTTCTGCATTGGTGTGTCCCG 15535 30 100.0 37 .............................. AAACTCCTCGGCGTCGACACCGAGCGCACGATCGACG 15468 30 100.0 38 .............................. CGTTTCCTCATCGAGGACTATTAAATCTCCTGACGAAT 15400 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GGGTTATTGTCAAGCGTGTTGATAACGAACTTGTTGACCGTGTCGATATCGGCGTCACCGACGGCTTCCAACCCGTTCCGCAGGTCACCACTGTAAGCGCGAATCTTGGTTGCTATGAGGAACGCTGTTTCTAAGCACAGTTCTGGTTCGGTCGCTGCACAGTCCTCCATTATAATTGAGACGTGCGAGAGGGACTGGTAGGAGAGTGAATCAACGATACTCTGCACTTCAGTCAGTTTTTCTGAACACGACAGAGAGTCATCCACTTCGAGGTCTACGACGTGCCAGACGGGAAGTTCATTGTCCTCGGCCATGACTGGTAGTATAGTTGCCTATCTGATAGCTCTACTCCGAGAAAACCCGAATCTCGGAAGTCCGTTACGTGGGTCCTGACCTGAATTTCCGTCGACCCCCGGGGGGGTTGAGGGTTATTGGGGGTCGACGGAAACTGTTGAGTGTGAGCAGTGTGTAGGAGACTGTATGCCCTCAGATTGGGCATG # Right flank : TTGCATCTCTTCCAGACTCTCCTCTATGCTCCGGTTACAGACGAACCCTTTCTCGTGAGGACTTCCGAAAATAGTCGATTCTCGGAGGTACCCTGACGGGCGACATCAGTGAATCCTTCGTGGACCGATGGACATCATCACCCAAGTAACGAGGATAATCACAAGGATGGGAAGCACGTCAACACCGGCCATCCACCACGGATTGACTGTTCGCGTCACGGTGACCGTCTCCTGATGAAACCAAACGTGTCTCGGTGGCGATGTTGAGAACCAAGAGACGCCGAGTGTGATCGAAACGACGACTGTGAGCACTGCGACTGGCTTCGATACGTGCTTGATAGCACCGAGCAACTTGCCACTCATAGTCGCTTCCTCCTACCTCGTGGTTCGTCGAGGCCGTCGCCATTCTCCCGAACGTGCATCCAGCCGAGCGCAGTTCGGAGGTAGTCAATATGGATGGCCATCTCACGATGAGTGCGTCCGGGGGACTCATCGGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 183059-181579 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLO01000015.1 Haloferax mediterranei ATCC 33500 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 183058 30 100.0 35 .............................. ATCCGGTCCCAGTAGAGCGCGTAGACGCCGAGGGC 182993 30 100.0 37 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGT 182926 30 100.0 35 .............................. GAGCTTGTCGAAGACGATTGGGTCGCTCACACTCC 182861 30 100.0 34 .............................. CGACAATATTCGACCAATTGGACATATGCATCCT 182797 30 100.0 37 .............................. GCCCGTTTAACTAATAATGTCATGGTTCGGAAAGCGG 182730 30 100.0 36 .............................. TCGACACGACAACACGACTCGATTCGCCGTACGACG 182664 30 100.0 36 .............................. TACACCGGACCCGAACTCGACGTGCACGTGAAGCCC 182598 30 100.0 36 .............................. TCTACCAACTGGTTGGGTGCTGCTCGGATATCTCTC 182532 30 100.0 34 .............................. GACCGGGACCCGTGATGCTCGACAAGGTTGTAGT 182468 30 100.0 36 .............................. ACGCTCGGTCCCGGCGAGACGGCGACGTTCGCGCCG 182402 30 100.0 36 .............................. TAAACGCATCTAATGAGTTATCAGACTCGTGGACTG 182336 30 100.0 39 .............................. ACCTCATAGCGCGGGTCCGCCCGTCTGGGTTGGCGTCTG 182267 30 100.0 38 .............................. CTTGACAACGGCTTTGACGGTCGGACAATGACCTATCC 182199 30 100.0 37 .............................. TGTCGTGACTGCGCCCACGTCATCACTATCGGTGATT 182132 30 100.0 34 .............................. CTCAAGAGGTGGCTCTAATGGGAATCAAGCAGTT 182068 30 100.0 38 .............................. AGCGTCGACGACGTGCTCGACCGACTGGAGTCTGACCC 182000 30 100.0 36 .............................. CGCGCACGGCATCCACGTCGACGAGCGGGACGCCCG 181934 30 100.0 38 .............................. ACGTCCTCGGTAGGATGTTTCGCCGCGAGACTCTGCAA 181866 30 100.0 34 .............................. GGGAACCGTTGAGGTCCTCGTCGATGATGCGAGC 181802 30 100.0 34 .............................. ATCGACCGGAACACGCGAACCACGCTCGGCGAGC 181738 30 100.0 35 .............................. ACTCCAACGAGTTCATTAATCCCGATGGGGAGGAG 181673 30 100.0 35 .............................. TTACAGACGATTCGGTCGACAGAACCCTATCGCCC 181608 30 80.0 0 ..........C.....T.CG..A.....T. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.1 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CTCGAACAGACCGTGGAGCATCCCCGACTGAATCGGAAGGTGAGCTATCAGTATCTCCTCAGAATTGAAGCGTACAAACTGAAAAAGCACCTCCTTACGGGAGAGGAATATGTACCCTTCAAGCGGTGGTGGTAACCCGTGGTGTACATTATCGTCGTGTACGACATGCGGGCCGACCGAACGCGATTGATGCTCAACTTCCTCAGAAAATACCTCACGCACGTACAGAACTCCGTCTTCGAGGGCGAGGTCACGGAGGGTGATCTGGAAACGATTCGGAACCATACGCAAACGTTACTGAACCCGGACGAATCGACGATTATCTACCGAATCGGGTCTGAGAAATACGTCGACCGAACTGTTATCGGAGAGGACCCAACTGACGAGTCACGGTTTCTGTAGCAGTCGACCCCCCGGGGGGTAGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGGGAACCGTCCGTAGAGCACTTGTGGCGCTTAAATCGGCCATG # Right flank : CCGATTCCAAATGTGACAGGAGGAAATTCAGACCCATCGGTAAACTTTAAATTCCGTAGTCTGAATACTCTTCCAGTACATCTATCGTATAGAGTTTCGTTCTAAAAAACGACAGCCGGTCCAGATGGGTGTTTACTCCCCTTCTTTGACTTCGTAGATCTCGTCGGCGGTAAAGCCGTGCGCTTCCCGGTGGACTTTCTCGCCTGCCTCTTTGTTCGGCGCTTCAAAGAGGCAGAAGACCGCACCTTCGTCCTCGTCCAGCCAATACTTCTTGTAGTTCACCCCGTACTTGTCTTGAATTTCGAGGTCTTGCCTGTGCGCCTTAACTGCCTCCTCAGCGGTGAGCCCCTCTATGTCCCTGTGAACGTCCATGAATAATGGCATGGTTGTTGTAGTGTAGCACGTCTCACACCATAAATACACATTAATAATTGTATGAATGTAGTCACAGATATGACTGAGTTCATAATCCTACCACGGATTTGATGGCGGGCAGGTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 193203-193893 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLO01000015.1 Haloferax mediterranei ATCC 33500 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 193203 30 100.0 35 .............................. AGTCACATGGGAATCCGGGCGCGACGGTCTCAACT 193268 30 100.0 37 .............................. CGGAACCGAGGGACGCCTCGGCACGCCCCCTGAGAAT 193335 30 100.0 35 .............................. AGGTCTCCCCCATCAACCGAGAGTGTTACGTCGGT 193400 30 100.0 35 .............................. CCGAACCGGGTGCCAGCTCATTTTGGAACACCCCC 193465 30 100.0 35 .............................. CTGCTCCCCATCGGGATTAATGAACTCGTTGGAGT 193530 30 100.0 36 .............................. TTCTTTATTCCGCCGCTCCGAACGTCCACGAATATC 193596 30 100.0 38 .............................. ATCCCGCCGAGAAGGTGGCAGGCGCGCAAGAACGCCTG 193664 30 100.0 36 .............................. CGACTGCCGGAGGACGTGAACGAGATCGTCCATGCA 193730 30 100.0 36 .............................. GACATCGTCGAGTCGCCTCTTGAGACCGCCGCTCAG 193796 30 96.7 38 .................G............ GTCGCGAACACGTGGCACGTCGTGCCAATCACGGCCGG 193864 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GTTACAGACGAACCCTAATTGGGTTGAAGC # Left flank : GAGAGCCGTTTGTTCGTTTCATGGTGGTCCATGCGTAGCTAACCAAAAGCCATAGATGCGTAGACAGCAAATCCGGCTATGGTTGCTGCCCTACACTTGGCAGTGGCTTATTTGTCACGCCCTGCCCTCTTGCACAAGTTTGGGGCGTGACTCAGCTACGCACCAGTGACAACTATTCGCATTCTCTTAACTCTTACTAGCGTGTTGTATGAAATTGTATCAGTAGATCGGGAGCCAAACATGGCCAGAGAAACCACATAGAGCAACAAATCAAATGATATCCAGAATGTGATTCCAATACTCAATCCTTGAATGAACACCAGCCAAGTAGTACTCAAATGAAAGAATAACCAACTCAATTGGTCAGAGAAGACCGTTCGAGTTGGAAGCTCGCTTTCGCTTCCGTCGACCCCCCGGGGGTTCGGGGGTTATTGGAGGTCGACGGAAACTGTTGAGTGGGAGCAGTGTGTAGGGGGCTGTATGCCCCTGAATTGGGCATG # Right flank : CGAGACCAAGGTCACGGACAGTGACGTTAGTCGTCGTTACAAAAGAACCACTATCGACAGGAACAGCAGCGAGAGCGCCCCCACTAGGAAATACCCAGTAGCGTCAAGTACACTCAACACAGCGATTGCTAACGCGATATAAGCCGGGTTCCGGGAAACACAGTATTACTAACCGGAACCAACACCGTCGCTCGAAATCCCTCAAAACGCCGACCGAAACCGACGACCGGAGTCGTCAGTTAGCCAGCGGGACCTGCATCTCGCGTTCGGCTTCGTCGTCCGCGTCCACAGTTCCCTCGGCGAAGACGACGCCGTGGGCACCTTCTCGTTCTTTGGCGCTCGCCGCGACGCGGACGAACGTCGCGTTGTCGCGCGCGGCGGAAATCGTGTGGCCGCCGCAGTAGCTGATTCCGGAGCGAACGCCGCCGAGGAACTCCTCGACGAGCGGTTCGACCGAACCTTTGTAGGGCGTGAGAGCTTCGACGCCCTCGCCGGTTGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAATTGGGTTGAAGC # Alternate repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //