Array 1 217547-213917 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPA01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_14_93 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 217546 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 217485 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 217424 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 217363 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 217302 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 217241 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 217180 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 217119 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 217058 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 216997 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 216936 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 216875 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 216814 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 216753 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 216692 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 216631 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 216570 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 216509 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 216448 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 216387 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 216326 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 216265 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 216204 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 216143 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 216082 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 216021 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 215960 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 215899 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 215838 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 215777 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 215716 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 215655 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 215594 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 215533 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 215472 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 215411 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 215350 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 215289 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 215228 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 215167 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 215106 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 215045 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 214984 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 214923 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 214862 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 214801 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 214740 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 214679 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 214618 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 214557 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 214496 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 214435 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 214374 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 214313 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 214252 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 214191 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 214130 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 214069 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 214008 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 213946 29 96.6 0 ............T................ | A [213919] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235341-234093 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPA01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_14_93 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235340 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 235279 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 235218 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 235157 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 235096 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 235035 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 234974 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 234913 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 234852 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 234791 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 234730 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 234669 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 234608 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234547 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234486 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 234425 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 234364 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 234303 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 234242 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 234181 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 234120 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //