Array 1 124-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAGC01000241.1 Escherichia coli strain TZ31_S scaffold_240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 185 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 246 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 307 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1816-3003 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAGC01000007.1 Escherichia coli strain TZ31_S scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1816 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 1877 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 1938 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 1999 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 2060 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 2121 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 2182 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 2243 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 2304 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 2365 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 2426 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 2487 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 2548 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 2609 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 2670 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 2731 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 2792 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 2853 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 2914 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 2975 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1220-1981 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAGC01000172.1 Escherichia coli strain TZ31_S scaffold_171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1220 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 1281 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 1342 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 1403 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 1464 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 1526 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 1587 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 1648 29 100.0 32 ............................. CGGCTTATTGCTCTTGCCGACGGATTACAGTG 1709 29 100.0 32 ............................. TACATGTTGATGACGTTTGCCAAATGCCATGG 1770 29 100.0 32 ............................. ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG 1831 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1892 29 100.0 32 ............................. CCGAGCATTATATCCTGTGCGTCGTTCATTTA 1953 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //