Array 1 935878-938288 **** Predicted by CRISPRDetect 2.4 *** >NC_019978.1 Halobacteroides halobius DSM 5150, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 935878 37 100.0 39 ..................................... ATGACGGGCCAACTGCTGAAGATGTAGTTGATGACTTCT 935954 37 100.0 35 ..................................... CACCTAATTCAACCGTCTTAACGTCGCTATTAGAC 936026 37 100.0 38 ..................................... CTAGCTTGTAATTCTTCTTTGATTATTTGAGTTGTTCC 936101 37 100.0 35 ..................................... ACTATATCACCTTCGTCTCCCGAAGTTTCAACAAG 936173 37 100.0 37 ..................................... TTTAACTATATCAATCGGCTCTTCAAAAGGTGATAAT 936247 37 100.0 39 ..................................... TTATATTATTAATCCAATCTAATCTGCAATAATCAGTAC 936323 37 100.0 36 ..................................... ATGAACTGACCTATCCAACCTTGCTCGTTAATATAT 936396 37 100.0 36 ..................................... TTTATAAAACCACCACCATCATTGGCTTTTTTAAGA 936469 37 100.0 36 ..................................... TCAATAGTTAGATAATCTATTGCAGTAGTTACAATA 936542 37 100.0 35 ..................................... ACTCCATAACTATAACCAGATAAGTCGATATTAAA 936614 37 100.0 37 ..................................... CCAACTAGAACCAAAGCTATTGTTAATTACGTCAGTC 936688 37 100.0 37 ..................................... GTAAATATTAGGTCTGCATTATCTATATTATTAACTT 936762 37 100.0 37 ..................................... GATATTAGCAATCAATGGATTATAGATAAATCTTTAG 936836 37 100.0 35 ..................................... GTCTATAAAATTGAATATACTGATTTTAATACTAA 936908 37 100.0 36 ..................................... GCAGCTTGCAGCTCCAACCAATATCTGAGCATTGAA 936981 37 100.0 38 ..................................... TTGTTGTTCCTGGAGATCATGATCATAGCTTATGATAC 937056 37 100.0 41 ..................................... GATCCAGTTGAAGATGACCCTAGTGGACCAGTAGAAGAATA 937134 37 100.0 38 ..................................... ACGCCTGTCAAGGTGCTGAATGTTCGAGGTGGCAAGAT 937209 37 100.0 37 ..................................... CTGACCTTAGCCCACATACATTACACCTCCTATAGAA 937283 37 100.0 38 ..................................... TGTTCATTAACACAAGATACTATTGTAGACAATGGATA 937358 37 100.0 38 ..................................... ATATTCTACCATTAGTTGTATTGTCAACAGGGTCAGAA 937433 37 100.0 37 ..................................... ACGCTTGAGACGTCGCCTAACTCTACCTCTGCATTAA 937507 37 100.0 38 ..................................... ATCTACCGAGAAAAAGGACTCAGCAACGATAATTACTT 937582 37 100.0 37 ..................................... ACTAACTTGTTGCCGATTGAAGGAGAGGCTAATACTG 937656 37 100.0 37 ..................................... GCAATGCAGGAGTTAATGAAGTCGCAGGAGTAGTTCA 937730 37 100.0 39 ..................................... ATTCAATCGCCTTACAACAAGCAGTAAGGGATTTAGATA 937806 37 100.0 37 ..................................... TATATTTCAGAATTGCATAATCGTACAGCAGAAGAAG 937880 37 100.0 37 ..................................... ATTGCATTGAAAATATTCTCCCAAATGTAAGTTATAG 937954 37 100.0 38 ..................................... CAAAAATTGATAGTTTCAGCCTAATATGATATAATAAA 938029 37 100.0 36 ..................................... TTTAATATTAAAAACGGATATGCAATTCAAGTTTTA 938102 37 100.0 37 ..................................... ACTCACCACCTACCTTATCAGCTAGTTTTAGCAACAA 938176 37 100.0 39 ..................................... AGGAAAGTATGCAACTAGTTATAGAACCCCAGTAGATTA 938252 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ========================================= ================== 33 37 99.9 37 GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG # Left flank : ACAATGTACAATTTACAATTAAATTATAAATACTATTTCAAAGAAAGAAGGGATTAGTGATGAAGGAGAAATATTGTGCTAAGTGTGATGTTTATTATTATACTCCAGAAGGGGAGAAAGAAATAGCTGATTGTCCATTTTGCAGTTTAGGTGGCCTAAAAAATGATAATTTAACAGTGAGAGATAAAATGGTGGAAAAAAATTATAAAAATTTTACTGATAAAAAAGGAATTTAAGAAGAATAATAGAAATAAAAAGTTAGTGATAGAAAAAGTGTTTTCGCAAACCTATCTAAAAAGAATTTTGAATGGAAGTTCTAAAAGTACTGGATAACACATAAAATACTCGTCAGCCCAGTAGTAACAGTGGTTGAGAAAGGTTTCGCAAAGCCCTAGGGGTTTGCTGTAAGATTCGGTTTGCGAAAATTTAGGTGTAGATTAGAGAAGGTGAAGTGCTGTGAAGCACTGAAATCATAGGGTTGGGATTATTCATTTCGCGCG # Right flank : CAGTTTAATAAAAGAGATAAAGAAAATGATGAACGGGGAGGTTACAGCAACCACTTTAGAGTAATTATAAGTGTTTGTTTTTAACTGTAAATTGTACATTGTAAATTGTCAATTGATTTATTTACTCTGTTAAGTAGGAGACGAAAGAACAAAATATAGGAATAAATGAGGCCAACTCTCTTTTTTAAGGGAAGTTGGCCCCATTTTATATAAAAATCTAATTTTTTTATTGTTAATTCCCACCCAGTTGGGAATGGGATGTGTTATACTAATTTTAAGTTAGATTTGGTGGTAGGTAGTGGATTAAGAAAGATTAGGTCAAAGTGACAATAAATGTATACTTTTGGAGGAAACTGAAGTTATATCAAGAATAATTAATTATATAGTTTCTTTTATTAGGAGGGAGCTAGATGAGTAATAATTTAAAGGATGATAATTTAAAGAAAATAAGTAAATTGATTAAGTTTATTAATTTGACAGAAACAAAATATGCGACTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 947122-948433 **** Predicted by CRISPRDetect 2.4 *** >NC_019978.1 Halobacteroides halobius DSM 5150, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 947122 37 100.0 35 ..................................... CTAGATGAGCGGATGGGGAGTACAATCAGACATAA 947194 37 100.0 37 ..................................... TACGGCGATGATCAAAAGAATGGGTTAGATCAATTTC 947268 37 100.0 38 ..................................... CCTGTTTCCTTGACTTGTAATGTTAGTTTTCTGCCGTC 947343 37 100.0 39 ..................................... CCTACATAACATTATATATAAAATTACCGTTTTTTTAAT 947419 37 100.0 38 ..................................... GTACAGGAGTGGCGATCAGAACAGACGAAAGCCTTAAC 947494 37 100.0 38 ..................................... CAATTCTCATTCCAAGCTTTGTAAGCCATAGCTGCTAC 947569 37 100.0 38 ..................................... ACGACAGGGGATGAGTGATAGAAATATTAGTATAGTTG 947644 37 100.0 35 ..................................... AATAAGTGATGAAATAAGTGTGACAGCTGGCAAGA 947716 37 100.0 37 ..................................... GGTTACTTAACATGGGAAGCTCAACTTAATGCTAACT 947790 37 100.0 40 ..................................... CGGAATCAGAATAGCAGTTGGAACCAGTTTGACGTAGACG 947867 37 100.0 41 ..................................... GCCATTAGAAAGACAGGAAGTTATTCAGTAGACAATCAAGA 947945 37 100.0 38 ..................................... TCTTTTTATTCTCCAGCTCTAATTTTTGCTTTTCTTCT 948020 37 100.0 37 ..................................... ATTTATTATTAGGATTTTTTCGTTCGATTAAGTAGCC 948094 37 100.0 39 ..................................... ACTATTGCTTTAAGCTCCGGTTTGATTTTTTTAAACTTT 948170 37 100.0 40 ..................................... CACATTAAGAGTCGTGCTCCATCATTAGTCAAAGCACCTT 948247 37 100.0 38 ..................................... CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT 948322 37 100.0 38 ..................................... CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT 948397 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 100.0 38 GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG # Left flank : TAGTTGGCAGAGTTGGGAGCGTTACTCTAATCGTCAAAATAAAAGGATAAAAATGAAAGGTTTAGTAGGAGAAGTAGAATATAAAGGTAACTTAGAAAAATTTTTATCTTATTTGATATTAGGCCAATATGTTAATGTAGGTAAGAATACTGTTTTTGGATTAGGGAATTATAAATTAATAAAGAATTAGATTTAAGAATAGATTTGCAATTAAATCTAAGGTTGTTGCAGGATTTAAGGTTAGAATCAAGAAGATTAAGCATAGAGATAGATTGCTATTTTCGCAAAGCTATCTCAAAAGACTTTTTTGTAATAATTTCAGACTGGATTGTTAGTATATAAAATGCTGGTCAGCCTAAGAATAATAGTGGTTGAGGGTAATTTCGCAAACTCCTAGGGTTTCTGTGCAAGATTCGGTTTGCGAAAATATAGAACGCTTTAGAAGCAAGTAACTGCTGTAAACCCTTGGTATCATAGGGTTGAAATTTTTATATCGCGCG # Right flank : GATATAAGTTAAGTTACAAGCTTATTTATTAAAGCTAAAGCGTATAAAATAAGATAGTTTTGCAATGTTATCTTTCTATGGTATAATATTATTTAGGCTAAAACAAATAATAAACTTGAGTTTATATAGATGATAGGATAAAAGGAGCGATACATATGTCAACAGAGGGAAGATATTTCATAAGGACCTACGGGTGTCAGATGAATGAACATGATTCAGAAAAATTAGCTGGAGTTTTAAAGGATATAGGGTATAAGCCAGCTGATGAATTAGCAAAAGCAGATGTTATTATTTTAAATACTTGTTGTGTGCGAGAAAATGCTGAGCTTAAGGTTTTTGGAAAGCTTGGTGAAATAAAACAGATAAAAAAAGAAAATCCAGGTTTGATTGTAGGAATTTGTGGTTGTATGATGCAACAAGAAGAGGTAGTAAATAAGATAAAGCAAAGATATAATTTTGTTGATATTGTTTTTGGGACACATAATATTCATCGTTTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //