Array 1 758784-759461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHC010000001.1 Gardnerella vaginalis strain UMB1489 ERS1455172_SC_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 758784 36 100.0 28 .................................... CATTCGCGGCATAGTCTGCGTTCGCTAC 758848 36 100.0 28 .................................... TTTCTTTCGCGCTCATTGTTATTCCTTT 758912 36 100.0 28 .................................... AAAACGAAAATATTACTATTCGCATGAC 758976 36 100.0 29 .................................... GAATACTCGCAAAACCAATGAACAATGAG 759041 36 100.0 28 .................................... CGCGGTCTGATTGAGCGTATTTATTCCA 759105 36 100.0 28 .................................... TTATTGCGCGCACTAGGTTGATGCTTGC 759169 36 97.2 28 ................................T... TTAGGATACTGATCGCGATGCTGATTGT 759233 36 100.0 28 .................................... AGCAAACTATCACAGTAAAAGACATTGA 759297 36 100.0 29 .................................... GAAACTCATCACGCCACTAGCTCCAGTAG 759362 36 100.0 28 .................................... ACGATGAGGCTTCCCGTACCGTCACCGG 759426 36 94.4 0 ................................A..A | ========== ====== ====== ====== ==================================== ============================= ================== 11 36 99.2 28 CAAGTATATCAAGAGGGGTAAGAGCTAATTCTCAAC # Left flank : ATTTAACGGAGTTGGGCCAACTATACCTAGTGCTCTTAATGATATTGCACAGGCTTATGGAATGTATGTGGAAAAACAGTCAAAAGATTTCTTGGTTCCAGAATACAAGGGAGGATTATGAAAATTGATGAGGATAGTGGCGGAATGTGGTGTCTAGTAATGTTTGATTTACCTGTAGCTACAAAAATTCAAAGGAAAGCCGCTACTGATTTTAGAAATTTGTTGTTAGACATGGGATATGCAATGGTGCAGTTTTCTGTGTATGTTCGTTACACTCCAACTCAATCTGGTAATCGCTCAACCGTAAAAGCAATAAAAGAGAATTTACCACCATTTGGTCAAGTTAGAATACTGCATATTAGTGACCATCAATGGTCTTCTGCGCTGAGATATACTAATTTGCATCAGGATATTTCGTCTGAAACTCCTGAAATTGCCACACTTTTTTGAATGAAAAAATGCCTAAAAAGATTGAAATCTTGCCCCTCTTGAGCTTATAA # Right flank : AACGTACCCCCGGTGAGACTCAAACTTATTCATCTGATGAATGAACTTTACGAGGTACACCTAAATCGTCTGCTATATCGTCGTAGTCATCACCACATTCATAAGGGTCTAGCAAATTATAAGCTTCGATTAGCAACTCTTTAGGTGCGCTCTTGTGCAATCCATGCTTCTACTAAATAATAATCAATTGCAATAGACGGTTCGCCTGCTCGAATGGCACTATTGGCTGCTTCTTTAGAGAGCTTATCCATGTTAGGTTCTGCATATGGACGGAGTTTCTCAACCATGTCATAACAAATTTTCATCATGTCCATTAGCCTTTGACTACTCTAGTATTATCTATCTTATTGTATGCAGTAAGATGCATCGTCTATGTTTTCCTTCTTATATGTATGTATTTTAATTATTGATATTTAGATTATCTGATATACTTTTTATGGAATCTAGGGCTCCTCTTACCCTTAATCTCTTTCTAATAGAGTTGGTTTGGGGGAATGACT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTATATCAAGAGGGGTAAGAGCTAATTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 854783-856518 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHC010000001.1 Gardnerella vaginalis strain UMB1489 ERS1455172_SC_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 854783 28 100.0 33 ............................ TGGTTATTAAAAAAGCCACGCTGTTTGCGTGGC 854844 28 100.0 33 ............................ CTGGACGGGTGCGGCAAAGAGCTGGAAAACACG 854905 28 100.0 33 ............................ TATACCGTTATAACACTGGTTTTGAGCGTCATA 854966 28 100.0 33 ............................ CATCATTAAATGTACTTTGCTTGGTTTTCTGCA 855027 28 100.0 33 ............................ CTGCCCGGTATGAGCCTATCCGGCACCATGAGT 855088 28 100.0 33 ............................ TGCGAAGGATGCAAAGCGCACAAAGGACTATGC 855149 28 100.0 33 ............................ TGCGAAGGATGCAAAGCGCACAAAGGACTATGC 855210 28 100.0 33 ............................ CGCGCCTTGTTGAAAATCGCGCGCTCGCTTTTG 855271 28 100.0 33 ............................ CCGGCTTTTATTTAAGAGAGGTGCTATAGATAC 855332 28 100.0 33 ............................ CCGAGCGTCTTCAGATTGCTTTCGATTAAAGAC 855393 28 100.0 33 ............................ CTCTCTGCTGCACGCGTAAGCATCAAGCTCAGA 855454 28 100.0 33 ............................ CAAAGGGGACGGCACAAACACCGCCCCCTTTTC 855515 28 100.0 33 ............................ ATCGAGTGCGAGTACTGCGCGCCCAATGTATGG 855576 28 100.0 33 ............................ TTATAGGCGCGGCACTGTAAAGCCGTCAGATAT 855637 28 100.0 33 ............................ TAGTGGTGTCAGCATATTCCTCACCTAAAGGCA 855698 28 100.0 33 ............................ TACGATTTTAGAGCTAAGAAAGACGCGCCATGC 855759 28 100.0 33 ............................ CTTTAGTTTTACGCGGGGACCGCTTAGCAAAAT 855820 28 100.0 33 ............................ CAAGCCATTAATGACAGAATTACAAATGAAATT 855881 28 100.0 33 ............................ CGCCAACCGTTATTTCCGATTGATAGCCAATGT 855942 28 100.0 33 ............................ CGTATTGGCTTCGCAGCGCGTACAGTAGTGACT 856003 28 100.0 33 ............................ CGTCATCGGCTTTGCGTTCTTCTGTTTCTTTGT 856064 28 100.0 33 ............................ CTGCGGAATAACCGGCGTATTCCAAGTCCACGC 856125 28 100.0 33 ............................ TTCACCGTTAGATACGCTAGCACTCATATAGCA 856186 28 100.0 33 ............................ CCACACGCTTAGCGGTTTCGCCAGCATCCTTGA 856247 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 856308 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 856369 28 100.0 33 ............................ CATCCATAAAAATAGCTACATCACGCACAGTCA 856430 28 100.0 33 ............................ TAAGGATTCAGTTAGTTTTGATGGTGCGGTTGC 856491 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAGCATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAAATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACAAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGATTAACAGCGCATCTTGTTTTTAATTTGACAGAATTGTTAAAATTTCTTGCGTAATAGTAGAATTGAAAGTGATGCGCAATAATGATAGCTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CCTACCAGCTAGCGAGGCTGAAGGCTTGGCATTGTTGCACGAGTATAGCGAAGACGCGAAAGACTAAAAAATTTTTGTTCACCCCCTTGCTAATGTTCTCACATTGTGATAATATTTAATTATGAAAGGAGGTGAACATGGAAATAAAAGATTGGATTGCGCTAGTGCTCAACATTCTAACTATCATCATTATGATTTGGTTAGATTTACGACACGACGATAAGCGCAAGTAAAAAACGGGGGTTCCAACCACTCATATTGGCTAGAACCCCTAGCCTCAATCTTTCCACACGATTATGAGTAGAGCAAGAGTATTAGGTATTATTTCAGCTATCTGCGCTATTACCGCGGTAACAAACGTTATTTTGCAAGTGCCATTCGCTGGCATTGGGTTCACTCTAGCTGCTGGCATTGCTGGCTTATCCGCTGGCTTAACGGGCAGTAGCAAAGAAAAATAAAAGGAGCTTACCATGTTAGATGAGAACGGACAAACAGTACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //