Array 1 586926-587869 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDCZ01000002.1 Escherichia coli strain VRES0439, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 586926 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 586987 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 587048 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 587109 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 587170 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 587231 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 587292 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 587353 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 587414 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 587475 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 587536 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 587597 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 587658 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 587719 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 587780 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 587841 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 613569-615366 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDCZ01000002.1 Escherichia coli strain VRES0439, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 613569 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 613630 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 613691 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 613752 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 613813 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 613874 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 613935 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 613996 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 614057 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 614118 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 614179 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 614240 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 614301 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 614362 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 614423 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 614484 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 614545 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 614606 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 614667 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 614728 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 614789 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 614850 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 614911 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 614972 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 615033 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 615094 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 615155 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 615216 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 615277 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 615338 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //