Array 1 1573768-1572959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022741.1 Vibrio qinghaiensis strain Q67 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1573767 28 100.0 32 ............................ TCAAAGTAAAGCGGGTCGCTCATTTTCGAGTA 1573707 28 100.0 33 ............................ CTACAAAAACACCCAATGCAATTTCAGCCAATG 1573646 28 100.0 32 ............................ TCGCGTCATTGCTTAGCTGATGTGATAATAAT 1573586 28 100.0 32 ............................ ATTTCTAGTGCGTTCATTTTCTTATCTCCGTT 1573526 28 100.0 32 ............................ ATTTCTCTTCTCCGGTTAAAAGATGCGTTAAA 1573466 28 100.0 32 ............................ GCCTAAAAAGTGTGGACAATCCGACAAGTCGG 1573406 28 100.0 32 ............................ TAGGCATGAAAGTGCCAATGGCTATCCGTTCA 1573346 28 100.0 32 ............................ AATCCAAGGCTAGACACCGTCTCAATGCTTTT 1573286 28 100.0 32 ............................ AGTAGAGGCGGTAATGTCTACACGAGAGCTAG 1573226 28 100.0 32 ............................ TTAAGTTGATGTTGACGTAATGCTTCAATCAA 1573166 28 100.0 32 ............................ TGTGGCACAAAACTTTTATTTTCAAAACTCAT 1573106 28 100.0 32 ............................ CGAATGAAGTCTTCAGAAAGTACTTGGTTATA 1573046 28 100.0 32 ............................ GTGTGTGTAAAGGATGTTCAACAATTCATTTT 1572986 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAGAGAAGATGTCAAATCAGAGCATTAACGCGCCTTATCTTGATTTACAGAGTGGCTCAACAGGGCAAACGTATCGTAAATTTTTTGAGTTTGGTGAAAAGCAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATGCATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : ATCCGTTTCTCTGTTGGGGTGTTCTTAGGTTTCTTCCCATCAATGACTTCTTTACAATGTGTTATTGATTTGGGCCTTGGTGCAACTTAGCCTGGTAGCCCCCACTATGACAGAGAGACATTCATGACTATTCACCGTATTAATCCAAGTAAACGTTGGTCTGACATCACCGTATTCAACGGCATTGCCCACTTTGTGGAAGTGGCTGATAGCGATACAAAAGCCGATATGAAAGGGCAGGTTGAGCAGATCTTAGCCCAAGCTGAGCAGCAGTTAACGGCGATCGACAGCGACAGAAGCCGTGTGTTATCGGTGACGATTTATGTCACGGATTTTGCTCATTTCGCCGCTTTGAATGAAGTGTGGGATAGCTGGTTTCCAGAAGGATGCGCACCAAGCCGAGCCTGCGTTCAAGCGCAATTGGCAAGCCCTGACTATCTGGTTGAAATGGCTTTTGTTGCCGCAGCTGGCCCAAAATTTCAGTAAATACGTTTCTTACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1582792-1581984 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022741.1 Vibrio qinghaiensis strain Q67 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1582791 28 100.0 32 ............................ ACTCCATGAAAGCAAATGTTTGTGTTGGCTCT 1582731 28 100.0 32 ............................ ATCTCGTCAGAGCAGGCTTCCAATGACAAAAT 1582671 28 100.0 32 ............................ ATCACACTCAAACTCTTGTTGCCACTCATTTT 1582611 28 100.0 32 ............................ ATCACACTCAAACTCTTGTTGCCACTCATTTT 1582551 28 100.0 32 ............................ GCTAGAAACTGACCCTGCTGGCACTTTCTCTA 1582491 28 100.0 32 ............................ TTTTAAACGGTGGTTAAACGGGCGGTGAATGA 1582431 28 100.0 32 ............................ CAGTGGGCGAACTCCGGCAACGTGGGCGAGTT 1582371 28 100.0 32 ............................ ATTGATAGTCGTGGAATACAAACTTTCCATTT 1582311 28 100.0 32 ............................ GCCACGGCGGAAACCGCGCTTCAAGCAATTGA 1582251 28 100.0 32 ............................ GTTGCTAGCAAGCGCGCTATTTCTGCGTTAAT 1582191 28 100.0 32 ............................ AATCCAAATCAAACCGCTCAAAAAACGCCCTG 1582131 28 100.0 32 ............................ ATTACCAAGCGTTAGCAATCTAGAGCCCTCCC 1582071 28 100.0 32 ............................ AGAAACTCAGCAGCAGAAACTAAACCCTCATA 1582011 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGTCACTTACGCCAGTTTTATGCGTAAGCACGTAAAATCTCCAGAGAGAATAGAGCGAAACATGCAGCAAAAAGCCACGCTTTGGGCAGCAAAATCAGGTAAACCGCTAGAAGAGTGTTTGCTTGAGCTAGAAAAAACCAAACCCACTACGCTTTGCTCTTTACCATTTATTTACTTGCACAGCCAACAAACCAAACAGCGTTCGCCAGAGAAAAACAGCAAATTTCCGCTGTTTATCGAAATGCAGCGACAAAGCGCATCACAAGTTGGACAGTTCGATTGCTATGGTTTGAGTGCAAAAGCGAATCGGCAGTCAGCATTGGCTACAGTGCCACACTTTTAAACTGAACTAAAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAAAGAGTTACGGTGGGTGGTTTTTAACAAGGTAAAAATGCGATTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : TGGATCGTTATTGATTGAAAGATAAATGTCGCTCAGGAGTAATACCTGAGAAAAAATGCAGATCAATTTTGAGTAGTCGCTGTACCCTTTAAAGGTCACTTCGTCAGGTTGTGGCTGCGCCCCTCCAAAACGTACAAACTTGCTTTACTAGCTAACCACCACACAGTTTAGAAAACGTATGCCCCTATTTTTTGATATGCAATAGGTTATTGATAAGTATCGATTCTTTATTTTATTAATCAATGTTACGTTCGGTATAAAGTTGGCTAAAGGGGATAAATCCTCACCTTTAGTTTTTTATTCAGCAGAATGGAACTGTGGAATGCGAAGACAGAACAACACTATTGATCTGCAAAGATTGAAAGAAGAACTCGATGATTTAAATGAATGGGAAAGCTATTCATGCACTTTAGTTACACCTATGTACGGTGGTGGAGTCGAGGCGGGGAAAGTCGATACTGCCATGCCGATTCGCGCCAGTGCTATTCGTGGGCAATTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //