Array 1 66029-68214 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUM01000001.1 Thermococcus sp. GR6 NODE_1_length_1111285_cov_56.720393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 66029 30 100.0 38 .............................. AAGGTGGGTTTGCATACTATGACTTCACACACTTCAGA 66097 30 100.0 38 .............................. TTATGTAGACTCCCGTTGCATCGTCTATCTTTTTGAAT 66165 30 100.0 38 .............................. CTTCTCGCAGAGTTCGCTTCAGCTGACCCGATCCTTTA 66233 30 100.0 37 .............................. TCCTGGCTCTCTCGATGGCCTGGTTCTCAAAGTACTT 66300 30 100.0 43 .............................. TCGTCTCAAAGAACCTCACCCTATCCTTGTAGATTAGTTGCAA 66373 30 100.0 37 .............................. TCAGTTTCTTCAGGTGTCTCGACAGTATATACTGTAT 66440 30 100.0 38 .............................. ACAGAGACTAACAAACCATCGCTTCGCAGTCTATGACA 66508 30 100.0 37 .............................. CAGTTAGGCTTATCCGGGCTGGATTTTGGATTTTCCT 66575 30 100.0 36 .............................. GGCGTATGGCTTCGTCAGGACGTCCCCAGAAGGTTA 66641 30 100.0 37 .............................. AGTGCTTCAAGTCGACATCCGCCCGCTCCTGGAAATC 66708 30 100.0 38 .............................. TTGGCGTAGGTCTCATTGAGTGCGTAGATGAAGCGATC 66776 30 100.0 38 .............................. ATGATGGGTGATGGAAGTAACGGGAAAAGAGTTAGCAG 66844 30 100.0 36 .............................. CACGCTTTATGGCTTGTGTATTATGCAACTGAAGAA 66910 30 100.0 38 .............................. GCCGGCCTCCCGGCTGGAACATACACCGGAACGCTTTA 66978 30 100.0 37 .............................. AAAGGGGGTTCATCTGACAGTGTTCTTAACAGGGCTG 67045 30 100.0 34 .............................. GGGCCTGGGTTATGAGATGGTCTCGCTCTGGTGG 67109 30 100.0 39 .............................. CCCAGATGGGCGGGGGTCTCGGTAGGGGAAAGACCCCAC 67178 30 100.0 39 .............................. TAATAACACTCGGCATCTCAACTGATATCCTGTCCCTGA 67247 30 100.0 37 .............................. GGTCTTACATTCATTTCATACAATTTTCCATGTTGCT 67314 30 100.0 37 .............................. CGAACAGCGGGTCGTTGACGAATTCCTTCACCTCGTA 67381 30 100.0 38 .............................. CAACGGCAACAGGTTCAACATCAGGAAGCACATATTTG 67449 30 100.0 36 .............................. GAAAAAACTCCAGGAGGCCCAGGCCCAGGGGAGTGG 67515 30 100.0 37 .............................. CTGCAAGGCCATACATCACTCCAACGCCTATCAGTTC 67582 30 100.0 37 .............................. AGAGACTATTCATGCAGGTCGTGCTCCCAAGCGTGTT 67649 30 100.0 37 .............................. CGCTGATGGACTCGAGGGAGGAGGTTAGGTAAATGGT 67716 30 100.0 38 .............................. ATTGCTGTCTCTGGCTTGAGTTCGAACTTTTCCAAGTG 67784 30 100.0 38 .............................. AAGAGCAACGTGAGCGCCAGGCCGATGTATATCGCTCC 67852 30 100.0 37 .............................. CAATATGTCCATTGTCATAGTTGACAGTGACGAGCAA 67919 30 100.0 36 .............................. ACGTGCACTGGGTGGACTGGAAGATAGTCATGATAA 67985 30 100.0 36 .............................. TGTTAATGTTGTTATGTATTGCGAATCTTTGTAGAC 68051 30 100.0 36 .............................. ATCAGCGCTCCAGCCACACCAGCCAACGGGTTCTCC 68117 30 100.0 38 .............................. TCGTTCAGGAGTGAACCCTTTTTCCCTTATTCCTATAT 68185 30 86.7 0 .................A......C.G..T | ========== ====== ====== ====== ============================== =========================================== ================== 33 30 99.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTAGAAACAACTAAACTCCTTCTTTTAGATTGCATCTCGTTCATATCCCTGTTTTTCTTGAATTTTCTGTTAATCGTTTCAGAATTTAAAAAAGAACTCCGTTTGACCCATTGGAAGTCTTTAATAACAGTTTGTGATAGTGTTACTTTGAGTTATAAAATTCCAAGTTAATTGTAACGAAAAATTTTCGAGATTTGGGAATTGAAGTGTAAGGTGCCCTCAATTCTGCCTATCCCTGCCCTGATATGTCTATTATCGGATTGGACTGGTTTTTTGCTGCTGAAGATGATAAAAAGGCTGACCTAGGCTTCGGAACTCTCCAACGCTGTTAATGGGTTCGCTGGAAAAAACGTCGAGAGGGTCTTGTCCCTTGTGTTCAGTTTGCATATCCATTAAAAAGCGGGCAGCACATTGTCGTTTAAACTCCCCTCCGCAGAAAGACTTAAATATTTCCAGCTTTTTTAATTCTTTTTGAGGCAAAAGGGGGTAAAAGCCGCCCT # Right flank : TCACAAAAGCTCTCCAAACAATAAATCCTCCTTCGTCCCCCCGGCCTTCCTGAAAGCCTTCTCACTCCAGCTTACGTTTCCAACGCTTCTTGGCCAGTGGGCATCGCTGGCAAAGGTGAGCTTTATACCTCTTTTTATGCACTCCCTGATGAAGTCCAGTTCGGGAACTTTATAACGTGAGCTTATCTCGAAGGCCTTTCCATTCGCCTCGGCCAGCTCCAGTATATCCTTCAGACCCTCCTCGCTTGGATAGCCGGTGTAGGGGAAGCTCGCCCCGAAGTGGCCGATTACGTCAACGTTCTCGTCTTGGAGGGCGAGCTTAATGAGCTCGACGTGCTCCTCCGGCGTCTCCACCCACAGGTGAACACTTGCTATCACGTAATCAAGCTTCTTGGCTATGTCCGTGGTTATATCAACCCCCCAGTGCATTATGTTGGCCTCCACCCCGGCCAAGACGGCGAGCTCGGCACTTTCGCTCCACTGGCGTATTTCCCTGACGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 352204-350960 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUM01000001.1 Thermococcus sp. GR6 NODE_1_length_1111285_cov_56.720393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 352203 30 100.0 37 .............................. ACAAACGTCATGGCATTGGCAGGGTGGCTTTATGACT 352136 30 100.0 37 .............................. TCTGGAGCCACGACCGGCACGCATGAGTTTGATGTAT 352069 30 100.0 38 .............................. ATCCCAGTAGGAAATCGTGTGCCGGCCTTCCATGCTGG 352001 30 100.0 37 .............................. AGATTTTCTTAGGCTGTTCGTTCGCCGGTAGGTCTTC 351934 30 100.0 36 .............................. TCGCAATAGGCACTAAGATGGACGCAAGCAAAAGAG 351868 30 100.0 36 .............................. ACTTTTAACACTCATAGGCCGATCACCTGCTCCTTT 351802 30 100.0 38 .............................. TTGTTGTAGAACAGGTACGAGCTCGGGCTGGTGAGGGT 351734 30 100.0 38 .............................. CATCAAGCTTGCCCTCTTTGAGGAGCTTTTCACAGCGG 351666 30 100.0 39 .............................. ACATCTGGAACAACCTTCCAGTGCTTGGCCTTGTCGGCG 351597 30 100.0 44 .............................. GACTTCGAGGAAATATGGTCTCTACGTCCACCTGATAACACCAG 351523 30 100.0 36 .............................. ACAAGATCGAGATAACCATCACCCCGAAGTCCGCAG 351457 30 100.0 36 .............................. CCTATCTCGTTCACGAACTTCACCAGCTCCTCAAGG 351391 30 100.0 37 .............................. TCTCTATGAACTCCGGCTATGGAACCCCGCCCACGAC 351324 30 100.0 37 .............................. GTAGTAGCGTTATAGTCAATGCTGAGGCTGCTAACAG 351257 30 100.0 35 .............................. AACTCTACGGAGGTCGGCACCATGGGGTTGGATGA 351192 30 100.0 38 .............................. CCAATCACTCCAAGTCCATAGCCCAAGCCAACTTCCGC 351124 30 100.0 37 .............................. AGCGTCGGCGGGACACCCTCGACGATAAGGGCCGCAA 351057 30 100.0 38 .............................. GTTATGTGTTCGTTAAGAACATTGATATACAGTACAGT 350989 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 19 30 100.0 38 GTTTCAATAAGACTCTAGGAGAATTGAAAT # Left flank : GGGAGCTTATAATCGTTGCCCGAAGGGTTTTCGGAGCAGATTCATACTGCGGCATCTCTGGCCCTTTCACTTCAACGTCCAGAGCTTTGGGAAAGCGGGACGGTGAAGTGTTTGGAAGTCTTTAGTAACGCCTGGTAATTATCGGACTTTTTGTTACGATTTTCATCTTGGAATGTAACGAAATTTTTTCAGAGCATTGAGAAGAGCACGGTGCGACGGTTTCCAGCCCATTTTCTAAGGGAAACTGTTCTTTTTGGCTGTTGCATGGTTTTGAAGTCTGGAGATTAACTTTTCTCTTTTCTTTGGGCTTTGGAAGTCTCGCAAACATTCTTGTTCACAGGATTTTTTAAGCTGTGCAGGCCTGAAATTCTTAGAAGAGGTCCTTGAAAGATCTCAATGAAAGAATCCTCATAGCGCTGAAACCGCCCCTCCGCAGAAAAACTTATAAGATTTAAGGCACTTTATACCTTTATAAGGCGAAAGAAGGAAAAAACTGCCCT # Right flank : AACGATGATGACGGACTGCTCGAGGTTTTCGCGAGGTAGTTTCAACAAGAAATAAGAAACCAAAAAGCGAAAAGTGCTTTTACTCCATCCTCCTTCCGAGCAAGCGGTTTATTCTCGCCCTTATGCCTCTGTTGCCCTTCACAAGCATAACCGTCTTCGGGCATTTGCTCGCTACCCTTTCAGGCACTTCCCCAAAGAGTAGCCTCTTGAAAAGGCCCTCCCTCGTTGCCCCCATGACCACGAGGTCGTGCTTCCTGCACTCATCAAGTATCGCATTTACCGCGTCGCTTTTGTTCACTATCTTCAGCTCCGCGTTTTCGATCCTCTCCATTACCGGCTTCAACTGTTCCCTTATCTTATCTTCCACCTTGCCAGTGGTGTTGACGCTGAGCACAGTAACTCTTGCACCGTACGCATCGGCGAGGATCGAGACGAGCTCCGCACTGATGGCGCTCTGCTTTCCTCCTCTCGTCGGGAAGAGAATGCTCTTAATTTCTTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAGGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 801045-801815 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUM01000001.1 Thermococcus sp. GR6 NODE_1_length_1111285_cov_56.720393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 801045 30 100.0 38 .............................. CAGGGGTCAAGAAGAACAACGCAACCGCCAGGCTAAGG 801113 30 100.0 36 .............................. GAGTTATTCATTGAGCTGGATGAATACGCAGACAGG 801179 30 100.0 38 .............................. GGGTTCAAAAGCCGTCTTCATCAACACCCAAGTTGAGG 801247 30 100.0 37 .............................. AAGGAAGCTCAAAACCCACTCGTTACCACTCAGATAA 801314 30 100.0 37 .............................. AATCCAGCCCTTGCCGCCGTCGTTGAGAATATAGATG 801381 30 100.0 37 .............................. TACTTTTGTAACTGCTTCTTATTCCCCTCAATGCTCT 801448 30 100.0 37 .............................. TTGAGGTAGTTAGGCGTCTTTATCTCATAGCTAAATG 801515 30 100.0 36 .............................. AACGAGAATGGAGGAACTGCCTGAGGGATGTTGAGG 801581 30 100.0 38 .............................. TCCGAAGCGGCTTCGTTCTCCAGCGGAAAATAACCCCA 801649 30 100.0 38 .............................. AGTTGCTGCAATGAAGGCCAGGACCTCAAAGGCAAGAG 801717 30 100.0 37 .............................. GCGTAGTAGTCATTGCCGAGAAGACCGCGGTAGTGCA 801784 30 93.3 0 ......G..................T.... | C,G [801809,801812] ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.4 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TGAATAAGGTCTTTTAGGGATTTTGGAAGGTGATATCAAGTTTGGAGGGGCACATTTTGGAACTGGTGTACTCTGAGGATTTAAAAGGGAAAACATAGCACTGTCGTCGGATGGGAAGTCTTTAGTAACATAAAGTAATTATGAAACTTAATGTTGCATCAAAGACATTTGATGTAACGAAATTTTTTCTAAAAGTTGAGATGAAACTTTATGGACCTCCAAAAAGTCAGCAACCTGTTTAAACTCGGTGTTTTTATAACCTAAAGAATATAGTTGCCCGTTAAGTCAATCAAAGCGATCTCTACCCTCTGGAACTTACAATGATTACTACACACAACACCAGAAAGACGTCTTGGAGCTTTCTATTTTTCCGATTGATTATTTTAATCCGGAGATTTCCAAGGCCGTATAGATACGCATTAGCAGACCTCCGGAGAAAGGCTTATAAAAACTAAGCTCTCATAATCTTTTGTTAGGCAGAAGAAGGAAAAAGCCGCCCT # Right flank : GTTCTTCTGGGAAGGAATTAATTACATAATTCTACAATAAATCAATAATCTAATTGTGCAAAGATAGATCTGGAGGGAAATCGCAGCAAATTAGCGTTAAGTAAAAGGCACTATGAAACCCAAAGAAACAGAAAAGGAACAAAATCGCCCTCACTCGAGGGCAGCCAAAAGCTTCTCCATGAACATCTTCTCCGGGTAAGCTCCCTCAAACTGAACCTTGTCCTCCCCGTCCACCTGGATGACGATCTTCGGGACGGCCATGACGCTGTACTGGTCAGCCCATTCCGGATACTCGATGGCCTCAACCATGTCTCCCCTGATCTTGCCCTTGCCGGCGTTGGTGTTCTCGATAGCGAACTTGTGGGCCATCCTGACCGCGAGCGGGCAGTATGGGCAGGTCGGGGTGACGAAGACGAGTATCCTGACGTCCCTGTCGACCTTGGCAAGCTCCTCCTTCGTATCGGGCATAAGGTCAGTCTGGGCGTTGCTGACATCGACGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //