Array 1 64360-63600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSLQ01000041.1 Escherichia coli strain upec-196 upec-196_ctg_1583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64359 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 64298 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 64237 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 64176 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 64115 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64054 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 63993 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 63932 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 63871 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63811 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 63750 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 63689 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63628 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81354-79861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSLQ01000041.1 Escherichia coli strain upec-196 upec-196_ctg_1583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81353 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 81292 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 81231 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 81170 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 81109 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 81048 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 80987 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 80926 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 80865 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 80804 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 80743 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 80682 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 80621 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 80560 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 80499 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 80438 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 80377 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 80316 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 80255 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 80194 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 80133 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 80072 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 80011 29 100.0 32 ............................. CCGAGCCCGATTATTGGCATGAGCGATGCGGA 79950 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 79889 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTAAAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //