Array 1 57540-61838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANJN010000013.1 Klebsiella pneumoniae strain G44 N_13_length_155667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57540 29 100.0 32 ............................. TATGGGACGTTGCCCACGTTCACCCGCCAGTG 57601 29 100.0 32 ............................. GCCAGTAGGCCGAAGCTGAACGGGGGAAAATC 57662 29 100.0 32 ............................. ATTTTATTCCGAGCGCAGCATATTTCGTCCGC 57723 29 100.0 32 ............................. AAATTGCAGAAAAAATCAATGGGTTGACAAAT 57784 29 100.0 32 ............................. AATGATATCACCGAACTGGCGCAGAGAGAGAA 57845 29 100.0 32 ............................. CAAACTCTGTCCGACCGCCTCAAAAATAAACG 57906 29 100.0 32 ............................. TTGTCCGCCCGCCAGCGCTCAATAGGGGCTAC 57967 29 100.0 32 ............................. GCTATTGGCGTTACACGGAAGAACAACACGAG 58028 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 58089 29 100.0 32 ............................. GCAACAGCGCACTGTTGAAATCGCTGCAGGAC 58150 29 100.0 32 ............................. CGCGTGCGCTGGTGCCTTGAAATTTTTGCAGC 58211 29 100.0 32 ............................. GACTGCTGGCGCTCACCACCGGAGATATTCGA 58272 29 100.0 32 ............................. GCGTGTCGCCGTTCGGGCGGGCGTTTAGCACC 58333 29 100.0 32 ............................. TGCTTTGCCCCTTCGTGGCCGTTACCGACACT 58394 29 100.0 32 ............................. TTTGCTTCGGTTAATCAGTCGCATATTCACCT 58455 29 100.0 32 ............................. ATCTTCTTCGTCTCGGAATTCTAAAGAATCCC 58516 29 100.0 32 ............................. GGGTGGGGATAACTGCGGTCGATGAGCTATTC 58577 29 100.0 32 ............................. GTGCAGGCACGAAAAAAGCCGACGAACTGCAG 58638 29 100.0 32 ............................. TGTTTTTTGTCAAATGATGAACTGTTTTTTAT 58699 29 100.0 32 ............................. ATATTCCCGGCGCCGGTGACATTCCGCGTGAC 58760 29 100.0 32 ............................. TTCGCCTTTCTGTCTGCAGAGGCGCGGACAGG 58821 29 100.0 32 ............................. TAGCTGGCCGTTTCAGTTGCGCGTGCGTCTGG 58882 29 100.0 32 ............................. CGCATCGCCGAGCTGGAGTCCCGCACCGTCAC 58943 29 100.0 32 ............................. GTTCATCTCTGACCTTGAGGATGAATCCCATC 59004 29 100.0 32 ............................. TGGTCGAGATCATCAGTAGGCCACTCACCATA 59065 29 100.0 32 ............................. GTGCCGAGTCGCCCGACACCGGCGATCATGCC 59126 29 100.0 32 ............................. GGCGATACGCTGAATAACCTCGATGCTGTTTG 59187 29 100.0 32 ............................. GTAGTACGGGTAATCGTCATTGCCGCCGTACA 59248 29 100.0 32 ............................. CCTAAAGACAAACCATACCGCATGCTCGACAG 59309 29 100.0 32 ............................. TATGTATGCCCAGTAACTTTTACATTCTGAGT 59370 29 100.0 32 ............................. ATGGTCTGCGGCCGCATGGTACCGAAGAAAAA 59431 29 100.0 32 ............................. CGGGCCAGCGCTTCAGCTTCTTCTGCTGGGAG 59492 29 100.0 32 ............................. AACCCCTGATTTCCCCAGAGTCGGCAGTTTCT 59553 29 100.0 32 ............................. TCTGGTCTGATGGCGTTTATAACTACAGCCAG 59614 29 100.0 32 ............................. CGAAAGAGGCGGTAACAAAAAAACTATCACAG 59675 29 100.0 32 ............................. AGGTTAGTTGCCCATCGTACATTTTGATTACC 59736 29 100.0 32 ............................. GATTCCGGTCACTCCTGGTCAGCAGCTGGTGT 59797 29 100.0 32 ............................. CCTAAACACCAGGATTTTCTTTACGCCGAACG 59858 29 100.0 32 ............................. TCCCGGACGTAATCCGTTATTGGGCGAACGTC 59919 29 100.0 33 ............................. GGAGCCCGTATTGATTGCGTCCTATCACCAGGC 59981 29 100.0 32 ............................. ACTGATATCTACTACCCGCATGACAGTCTTCC 60042 29 100.0 32 ............................. GCCTTGCACCATCTGATCCATGGCGCCGATGT 60103 29 100.0 32 ............................. CGTCTGCAATGATCGCAGTAGAGCCGGGGAAA 60164 29 100.0 32 ............................. CGAACCCCGCCGCCGCAGCCAGCGCGGCCATA 60225 29 100.0 32 ............................. CGGGAACAAAACCACCACGGCGAGGTACATCT 60286 29 100.0 32 ............................. GGTCGTAAAGGTGACCAGGGTGACCCCGGCCC 60347 29 100.0 32 ............................. AATTAACTCACAGGTACAACGTCCGGCACATC 60408 29 100.0 32 ............................. GGATGGTAAGAGTGAAAAAACAACAGAAAAAG 60469 29 100.0 32 ............................. ATTTGAAAGATACGTTTCGGGATAGATGGAAT 60530 29 100.0 32 ............................. CCTACCGCCCTGACGTTCTGTTTCGCCAGGTT 60591 29 100.0 32 ............................. CGACGGCAGAGTGTCGTTTTATCACCGCGGGA 60652 29 93.1 32 ...C........................T GATGGACCTTAGCAATCTCCAGCAGGCCAGTC 60713 29 100.0 32 ............................. CGTCACAACGCCGGCGACAGTAACATCGTCCA 60774 29 100.0 32 ............................. AATCGGATGTTCATAATATCCAGCCCATTCCT 60835 29 100.0 31 ............................. CCGGCCCGTTCCAGTCGTCCCTGGCAAACGA 60895 29 100.0 32 ............................. AACGGAGTTTACAACCCAGGCGCCCTGATGAT 60956 29 100.0 32 ............................. CAAATCCTGGTGTCGTCAGCACAGACCTGACT 61017 29 100.0 32 ............................. GAGCAGTAACTGCCGTTAATGTCCTCACCGGG 61078 29 100.0 32 ............................. GCTCGGCGTAGTGCGTGCCGTTAAAGCCGATT 61139 29 100.0 32 ............................. TCTATTTTTGTTCTGGCCAGCGCGCCGGTGAA 61200 29 100.0 32 ............................. TGTATTGCTACCCGCACTAAAAAGGCGGCATA 61261 29 100.0 32 ............................. AGAACGGGATACCCTACATCTTTGATGCCTAT 61322 29 100.0 32 ............................. GGACGAGCTTTTCCGCCGCGCTGATAAAGTCC 61383 29 100.0 32 ............................. TTCGAGTTACGGGTGAGTGGAAAAAACGTAAT 61444 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 61505 29 100.0 32 ............................. GTTCTCTGCGCTGGCCTTGTCCGGTGCATCCT 61566 29 100.0 32 ............................. GTGATGGCGAAATCGATGGCGAACTGTTGGTA 61627 29 100.0 32 ............................. GCGTAACGGGACGCGGAACCGACAGGAAGCCC 61688 29 100.0 32 ............................. CAATCAACAGGTGCGGAACCGGTTCAAGAATA 61749 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 61810 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 489715-488039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANJN010000001.1 Klebsiella pneumoniae strain G44 N_1_length_523523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 489714 28 100.0 33 ............................ CGTTTAGTTTTTTGATGGAGGGCGGCGTTGTTC 489653 28 100.0 33 ............................ TTGCGTGCCTTGCGTTAATACAGACATGTTTTG 489592 28 100.0 33 ............................ TGAGTGCATATTATGTTTATCGGACCCGGCGGG 489531 28 100.0 33 ............................ CGATGTCCAGGTCGGCGTCCGGATGAAAGGCCA 489470 28 100.0 33 ............................ CGGGGATCGTTATGTCTTCTCTTTCTGGTTAGA 489409 28 100.0 33 ............................ TCCGCCTCTTGCTTCCGACCTGGTAAAAGCGAT 489348 28 100.0 33 ............................ CCGGATTCGATGAAATTTCCGGTAACTCAATGA 489287 28 100.0 33 ............................ TTTCACGCTGCCGCTGATGGCGTGGCTGTGGGT 489226 28 100.0 33 ............................ CGGATCCCACGCGGGCTGTATTCTCTACATCGG 489165 28 100.0 33 ............................ CTTCACTTCCTCGGCACGTCAGCCGCGACAGCG 489104 28 100.0 33 ............................ CAGGTCGATATGCAGAGAAAGGTTGCATGGGTA 489043 28 100.0 33 ............................ CATCATTGCCCGCGCGGCCCTCAGGCACGAGGG 488982 28 100.0 33 ............................ CAGCACAGTGGGAAAGCGACATTCCGTTAATTA 488921 28 100.0 33 ............................ CAACCAACCGACGACGGACCTCAACGCCGCGCA 488860 28 100.0 33 ............................ CGCAACTTTAGCGGCGCTGTATTCTGCGTCGGT 488799 28 100.0 33 ............................ TACCGGATCAAGTTCTGGCAGGTCGATGACGAC 488738 28 100.0 33 ............................ CGAGGGTTTGAGCGAAAGAGCGGAGCTTTTTAC 488677 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 488616 28 100.0 33 ............................ TATGCTTTCTGCTGCTACTGACGCAATTGATCC 488555 28 100.0 33 ............................ CAGCCGATACCCCGGCGGCGTCCGCGTCCTTGC 488494 28 100.0 34 ............................ CAAAACGGCGTCATTGAGGTTGATTGCGGCTGTG G [488472] 488431 28 100.0 33 ............................ TGGATCGTCGGCAGCTCACTGCTGGATATTGCG 488370 28 100.0 33 ............................ CAATTACCGCGACTGCGGGAATGCTCTGAAGAT 488309 28 100.0 33 ............................ CAGGCCTGACGGCTCTTTCGGCAGGGCGTCGAT 488248 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 488187 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 488126 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 488065 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGGCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACTGGCTACAAATTGGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 499045-498468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANJN010000001.1 Klebsiella pneumoniae strain G44 N_1_length_523523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 499044 28 96.4 33 ..........T................. CCTCTGCAGGCTATCGACGTCTCTAAAAACGTT 498983 28 100.0 33 ............................ CTGGTCAAGTTGGTTTCCTGGCGTGGCAGCGTT 498922 28 100.0 33 ............................ TATTTATTATCAGGATATGCCTGTGTGGGGGGC 498861 28 100.0 33 ............................ TCCAGCGAACAATGGCGGTGGATATGGCGGCGG 498800 28 100.0 33 ............................ CCGATATCCGCGAAAACGGGCTTGACGTGGTAC 498739 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 498678 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 498617 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 498556 28 92.9 33 ..............T........A.... TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 498495 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.9 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTATGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //