Array 1 83129-82511 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJE01000010.1 Halorubrum saccharovorum DSM 1137 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 83128 30 93.3 38 G............A................ TCAGGGTCAACACGTTTGCCGACGAACAGACCAGGAGC 83060 30 96.7 35 G............................. TGCCTTCGAGGACGACGACATCCAGGGGGAGACCA 82995 30 100.0 36 .............................. GTCCTCGACCTTGGTTCAGATGTACAGTCCAACGCA 82929 30 100.0 34 .............................. GCCGCGCGGATCGCGGCGCCGGTCCAGACAGCGG 82865 30 100.0 35 .............................. TACGAGAAGTACACCGAGACATCGCTGTCGAACTC 82800 30 100.0 34 .............................. ACCCGTGAGGGGCTGGGCAGCCAATTCCGCGACG 82736 30 100.0 36 .............................. CCGTTGTAGACCACGCTCGGGTCCCCGCCGATATCC 82670 30 100.0 33 .............................. AACCTCTGCCACAACCTGATCGACTCGGACGTG 82607 30 100.0 37 .............................. AAGAAATTGCGTCAACCGTGTATCGCCGCGCAACGAG 82540 30 96.7 0 ..............A............... | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 35 CTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GGAGACGGTCGACCATCCTCGGCTCGATCGAAAGGTGAGCTATCAGTACCTCTTGCGACTGGAGGCCTACAAGCTCAAAAAGCACCTTCTCGCCGACGAGCCGTATGAGGCGTTCCGGAGGTGGTGGTGATGTACGTGGTATTAGTCTACGATATGGAGGCGGAACGGACCCAACGGATGTTGAAACTCTGTCGGCGCTATCTCACCCACGTACAGAACTCGGTGCTTGAAGGTCACATCACAGAAGGAGACCTCTCAAAACTTCGAAATTCTATCGAAGACCTCCTCATAACCGGTGAGAGTGTGATAATTTACGAACTCTCATCAGAAACGCTTGTGGATCGAACCGTGTATGGTGAGGACCCTGCCGAAGACAGTCGGTTTCTCTAGTCTGGGCAGACGAGTATCATCGACCCTGTGGATCAGAGGTTACTGGAGGTCGACGGAACGCTTGTGTGTGAGGAGCCAGTAGACCGGCCATGGTGCCTAAATCAGCCACC # Right flank : CTCGGCGAGCTTGCGCGACAGCGTCGTCGACGGGATGCAAGGTTTCAGACGATTCTTGTTGGATTGAGACGTTACGTCAATCAAATTGATTGCGGGATCGTCGAAGCTTACAGATGGAATTTTGCGGACTGAAGCGCGCTATAATTTGTTGGAGAATTTGCTACGGTAAGCAACGGTAGCAAGGCGCGCCGAGTCAGGCGCGCCGACCTCCTGTGTTTTTGCTGTAATCTGCCGAGCGAAGCGAGGCAGTGGTTTACTCCAGTGGCTCCTTAGCCACACACCTAACGGAGAGGTGGGTACCCCACCTCGGAGTTAGGGCGGTGCGGGAGAAAGTGTAGTCACTCAGGGAGCGAGAGATCGACGAACTAGTCGCGATCACCGTCAGAAAAGAAGCAAAATAATCCGCTAACTACCCGAATCGATAGTGATGCCTCTCACGAGGTGTCGCGCTAGCCGGGGGTTCCTAGCGCGTCGGCAAAGTGGCGGGGTTCGTATACGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 93050-97614 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJE01000010.1 Halorubrum saccharovorum DSM 1137 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 93050 30 100.0 35 .............................. GAGCGCTCGGTGGACGGCTCGGCGGGAGTAGCGCA 93115 30 100.0 38 .............................. GCCCTCGCGGGTAAAGCACGTCTGGAACGACGTAACGA 93183 30 100.0 0 .............................. - Deletion [93213] 93213 30 96.7 38 N............................. GCCCTCGCGGGTAAAGCACGTCTGGAACGACGTAACGA 93281 30 100.0 35 .............................. ATCGTCTGCGAGCCCGCCGAAGCGCGTACCTGCTC 93346 30 100.0 36 .............................. ATCGGCATCGGGACCGTCCTCGCGACGGCCTACGTC 93412 30 100.0 37 .............................. ATCCCGGACGGGGTGAGGGCATGAGCCGCGATCAATC 93479 30 100.0 38 .............................. GCGAGTTCGCCACGCACACCAATGTACCCACTCGGGTC 93547 30 100.0 34 .............................. GCCTGCGGCGTCGCGTAGTTCGACGAGAGGTCTG 93611 30 100.0 35 .............................. CAACACACAAGGTCAACCGGGGTGAACGGCACGTC 93676 30 100.0 36 .............................. TGAAACTCGCTTTCGAGGTAGGGGTCGGCCGGGATC 93742 30 100.0 35 .............................. GCCGCCGTGCCAGAGCCGACACCCGTCACTGAGGT 93807 30 100.0 35 .............................. CTCGCTGGCGATCGCGTCAGCGACGACGTGACCGG 93872 30 100.0 36 .............................. GACGAGCCCGACCCGCCGCGCGACGAGCTGGCGCCG 93938 30 100.0 34 .............................. TCCGACCGGGTGCTGTTCCCGCGGCTCGACGGCG 94002 30 100.0 35 .............................. GAGCGCGCGAGCCACGACTCGGCGTCGAGGAAGCC 94067 30 100.0 33 .............................. ACGAATTCCGAGGTGACGGCGCATGACGTGCCG 94130 30 100.0 35 .............................. GCACTCAAGATGACCCGCTCAAGTTCATCGGCGAC 94195 30 100.0 36 .............................. GCGTTGTCGAAGGTGTACGGGACGCTCCCGAGTAGG 94261 30 100.0 36 .............................. ACGATTACCTCGACCTTGTCGATCTGGTCGAGCGTA 94327 30 100.0 35 .............................. ACTCCTCCCGACGATGACCCGGACCCGGGACCGCT 94392 30 100.0 36 .............................. AAGATCGGGCGGTCCGGCGAGTCGGTGGTAAGGACG 94458 30 100.0 36 .............................. GTACGCTTGTCCTGTAGGTTCCACGTGCGGAGGCGG 94524 30 100.0 36 .............................. CTTGGTCGGATTACCTACCCAAAGCTTTCGATCATC 94590 30 100.0 36 .............................. TCAAGCTCCTCGTCCGGGTCGGTCGGAACCTCGATA 94656 30 100.0 35 .............................. GTTGATAATGAGCCCGTAGGAACGGTTCCAGATAC 94721 30 100.0 36 .............................. AGCCTCTCCGGTGGGTCGACGATCTCGGCGCGGAGT 94787 30 100.0 36 .............................. CTCGCGATGGCGATTCTCCCCGGCCAGTACGGCCGG 94853 30 83.3 53 .......................NACG.A. CCTTGTGGGGTTGAAGCCTCGCGATGGCGATTCTCCCCGGCCAGTACGGCCGG 94936 30 100.0 36 .............................. GCCACGCTTCCCGTCGACGCGGACTTTGACGGAGTG 95002 30 100.0 34 .............................. AACCGCGCCAACAAGGCGAGCGAAGGCGACGACG 95066 30 100.0 34 .............................. ACCAGCAACAAGGGGACCGTCAGTCTCATCAGTC 95130 30 100.0 34 .............................. CGCCCGCGCCGTACTCCGCGACCGTAATCGTGTG 95194 30 100.0 36 .............................. CAGTACGAGGGCGCGCAAGAACTCCGCTTCGAGGTG 95260 30 100.0 37 .............................. AAAGTCATCAACAACCGCGCCGGAGGTGTTTAGAGTT 95327 30 100.0 35 .............................. GACGAGAGAGGACTATGAAACACGCAACTACAGAC 95392 30 100.0 36 .............................. ATGCGATCACCCCGTTGCCTCGCTCGTTGTCCATTC 95458 30 100.0 35 .............................. TTTGTGCGACCCACAGCAACGCCACGGAGAACAGG 95523 30 100.0 33 .............................. GCGGTGAACGCGACCGAGTACAACGAGTACCGC 95586 30 100.0 35 .............................. TCGCGTTAGTTGTCCAGCTCCTCATCGCTGGGTTA 95651 30 100.0 34 .............................. GTAGAGCAGTAAGAGGAATGATAATGCTGCATCA 95715 30 100.0 35 .............................. GGCTACTACTACTGTAAGCCGTGTCACGAGCGGGC 95780 30 100.0 36 .............................. CTCCATGCTCGCGCCGCCGCCGAGTTCCTCGATGGC 95846 30 100.0 35 .............................. CTCCGCCCAGTCGTCGAAGTCGTCGACGAGAGAGC 95911 30 100.0 35 .............................. GGCGTACAAGTAGCACCGACCCTTACTGAAACGTA 95976 30 100.0 35 .............................. AACGCTCCGAGCGAGCTGGAGATACGGGCACTGGA 96041 30 100.0 35 .............................. GTGGACGGGATCGCGCTCTGGGTGTGGGGCAACGC 96106 30 100.0 37 .............................. AGCTACTCGGCGAGCTCCGAGACGAGCATCACGGTCA 96173 30 100.0 36 .............................. GGCATGATCTTCGGCGCCGTCGAGCTCGCACTGTTC 96239 30 100.0 34 .............................. GGAGACAACTCCTCCCGAGAGGATGTCTACTGTC 96303 30 100.0 35 .............................. AGAGACGACCACATCAGCGGAGACATGCCAGAGCG 96368 30 100.0 34 .............................. GTAGTAGCCCCGCTTCCGCGCCTGTCCGTCGCCG 96432 30 100.0 35 .............................. TGCTCTTCGAGTTGGTTCCACTCCTCTTGGGTGAT 96497 30 100.0 35 .............................. GTCATCGAGCCTTTCACGTCGACAGGCTCGCCGCT 96562 30 100.0 35 .............................. AGCTCCTCGATGGCAGCAACCTTAGCGTCCGTATA 96627 30 100.0 36 .............................. CTGCTCGGATGCTTGACCTGTTACGGAATAATGGGG 96693 30 100.0 35 .............................. GAGTCCTCCGGTTCAGCATCAAAGACGAACGACTT 96758 30 100.0 35 .............................. ATGATCGTCTCGCGATACTCGTCGGGATCAATCGC 96823 30 100.0 36 .............................. GGGACACGCAGTGATTTTCTCGATCTTCTCGATGTA 96889 30 100.0 35 .............................. ATGTTACCAGTCGTATTCCGCACCGCACTCCCCGC 96954 30 100.0 36 .............................. CTCGCGATGGCGATTCTCCCCGGCCAGTACGGCCGG 97020 23 76.7 0 .......................------- - Deletion [97036] 97043 30 96.7 36 N............................. CTCGCGATGGCGATTCTCCCCGGCCAGTACGGCCGG 97109 30 100.0 33 .............................. ATCAATCAGGACAGCCTTAGGCCGATCACGGTT 97172 30 100.0 37 .............................. GCCGAACCGACAGAACCGCCGTAACTGGCGACGGGCG 97239 30 100.0 35 .............................. GATACATCGAGGAGCGGTCCGCGAGGCCGACAGCA 97304 21 70.0 0 .....................--------- - Deletion [97316] 97325 30 83.3 35 GG..G.AN...................... GATACATCGAGGAGCGGTCCGCGAGGCCGACAGCA 97390 30 100.0 35 .............................. GACCTCTGGCAGCGCAACAAGGATCGACCGCAGTT 97455 30 100.0 35 .............................. CTGCTCCTCGTGTTCTTCGGACTGGTCGCTGCCGG 97520 30 100.0 35 .............................. GAGAGGAGTTGGTCCCGCGATGAACCGAGATCGTG 97585 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================================== ================== 72 30 98.7 34 CTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCGCCACACCCGTCCGCGGAGCTTGTGGTGGTACGTGTTATCGTACGCGGTGTCTGCCCGTGCCGACAGCCGCGCTACGACGCGCATCGATTGATCCTTCGTTCAATATGTGTTTGAATCATCAATAAGTTGCATATTGTGCCGACTATAGCTTGGTTAATATATTTTCCCCCATAGATAGTTCATTTGAGATTCAGATCGATATGACGGATCGAAATCGACCCGGAGCGCTCGCTGTCGAAGCGCCCTGTTCCCGTGACCGTCGACGTCGCGTCGGGTGAGATATCGCGCTGATCGACAGGAACGTCCGAGTTCATGCCGGTAGTGACACCTACGCCTCGAATATCCACCCGGCGATCGGCGAACGAGTGGCTCGGCCTCTTGGGGGAATCCCGCGAGCGTCGTCGACCCCCTGGGGGTTTGGGGGCTATTGAAGGTCGACAGAAAAATTTGTGTGTGAGCCCCCAATAGACCGCCTGTGGTGCGCAAAGCAGCCACC # Right flank : CATGTGGGCGCCGCTGATCGTCATGGCGGCCGGGGNNNNTTTCAGACGAACCCTTGTGGGGTTGAAGCTACCATGGCGAAGAATACGACTCGCGACCGTCTGCTTTCAGACGAACCCTTGTGGGGTTGAAGCAGCCTTGATCTGGAACTGGAAGGCGAAGCGGGCGACTTTCAGACGAGCCCTTGTGGGGTTGAAGCTTGTTGATGCTGAAGGAGGATCATATACCTACTCATCTTTCAGACGAACCCTTGTGGGGTTGAAGCGGCGAGGAGGACGGCCCGATGCTCACCGTCACCGTGCTTTCAGACGAACCCTTGTGGGGTTGAAGCAGGGGCTCGGGGTGTCGAACTACCCGCCAGCCGGGACTTTCAGACGAACCCTTGTGGGGTTGAAGCGACCAGTCGATTTCTACGCTCGACTCGACAGAGACCTTTCAGACGAACCCTTGTGGGGTTGAAGCGACGTCCGCGGGCCGCGCCCGCGTCACCTCGCGTCTTTCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 97716-98267 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOJE01000010.1 Halorubrum saccharovorum DSM 1137 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 97716 30 100.0 35 .............................. AGCCTTGATCTGGAACTGGAAGGCGAAGCGGGCGA 97781 30 96.7 36 ...........G.................. TTGTTGATGCTGAAGGAGGATCATATACCTACTCAT 97847 30 100.0 36 .............................. GGCGAGGAGGACGGCCCGATGCTCACCGTCACCGTG 97913 30 100.0 36 .............................. AGGGGCTCGGGGTGTCGAACTACCCGCCAGCCGGGA 97979 30 100.0 35 .............................. GACCAGTCGATTTCTACGCTCGACTCGACAGAGAC 98044 30 100.0 34 .............................. GACGTCCGCGGGCCGCGCCCGCGTCACCTCGCGT 98108 30 96.7 35 .......................C...... CTCGAAGACATCAAGTCCGAGCTGACGACCACCGT 98173 30 100.0 35 .............................. ATCGGGGTCGGCGATGTCCACCTCTCGGGGGCTCG 98238 30 96.7 0 .......................C...... | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 98.9 35 CTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : ACCGCCGTAACTGGCGACGGGCGCTTTCAGACGAACCCTTGTGGGGTTGAAGCGATACATCGAGGAGCGGTCCGCGAGGCCGACAGCACTTTCAGACGAACCCTTGTGGGGTTGAANCGAACCCTTGTGGGGTTGAAGCGATACATCGAGGAGCGGTCCGCGAGGCCGACAGCACTTTCAGACGAACCCTTGTGGGGTTGAAGCGACCTCTGGCAGCGCAACAAGGATCGACCGCAGTTCTTTCAGACGAACCCTTGTGGGGTTGAAGCCTGCTCCTCGTGTTCTTCGGACTGGTCGCTGCCGGCTTTCAGACGAACCCTTGTGGGGTTGAAGCGAGAGGAGTTGGTCCCGCGATGAACCGAGATCGTGCTTTCAGACGAACCCTTGTGGGGTTGAAGCATGTGGGCGCCGCTGATCGTCATGGCGGCCGGGGNNNNTTTCAGACGAACCCTTGTGGGGTTGAAGCTACCATGGCGAAGAATACGACTCGCGACCGTCTG # Right flank : CTTCCGGTTGGGGTTCACCACCTTAATAAGCACATCCAAGACCGCATCGACGCCGGGGAGCTCCTCCTCGCAGGTATCCGGGCCCTCAAACGCGCCGACAGGGCCGTGGAAACGGTGGAGGACGTTCGGTAGACGTTGGTGGCATAGAGAAGTACCTCACCCCCGACAGAGACACTCGTGTGACACTCGAGTCATATCGACGAGATGCCGGTGGATGTCGTCGGCGAGCCGGTACATCGCCTCGGCCTGTTCCTTCGTCGCGATCCCAAGCCTGTAGTAGGTCTTCGTTCGGTTCCGGTTCCACAGCTCGGCAAGGTCCTCCCCAAACGCGTCGTCGTAGAGGCCAATCTCGGCACCACGTTGGTAGAGTCGTCGGTGGCTGCTGATGACCTCTGCGGCGGACATGGCCCCATCATGGATCAACCGGAACTGGATAGTGCGCTCGATGGCGACGAACGCCGACTCGATCACGACCGTGTAGTACCCTTGGTCGAGGAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : CTTTCAGACGAACCCTTGTGGGGCTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //