Array 1 121262-120764 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLL01000004.1 Halolactibacillus alkaliphilus strain CGMCC 1.6843 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 121261 36 100.0 30 .................................... TAACTGTGATTTGGTTAAAGCATCAAAGGA 121195 36 100.0 30 .................................... CTCTGTAGCAACACCTTTTCCTTGGAATGT 121129 36 100.0 30 .................................... ACTTGGAAATACAGCTATTGATCTTCACAT 121063 36 100.0 30 .................................... AGTATAACAAAGACCAAGTGGAGCATTTAA 120997 36 100.0 30 .................................... AAGAAGAATAAAGATTTAATAAAAGCGAGA 120931 36 100.0 30 .................................... TTTTGATAAGCATTATGAGATATATAAAGT 120865 36 100.0 30 .................................... AGTTAATTATGCACGATACATGCTCGTCTT 120799 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTAGAGCTGTGTTGAATTGAATGATTCCAAAAC # Left flank : ATGGTCAAAACAGAATTAGAAAAGCTGATGATGTCCATTAATGACATCATCAGCGATCAATTACTAGAGCATGACTTAGATATTCAAACAACAGATATTACTTTTCCAGCATTATTTAAAGCCTTAAATATAAAAATCAATAATCAAGCGGCATCCATTAATGATAAAATCGCAGATATCATTCAACTATTTAAATATCAATCAAGAAAAAAGCTATTGGTCTTAGTTAATGCATGCTCATATTTAACAAAAGATCAAGTAGAGGAAACGCGTAATTATTTATCACTAAATAATGTTACCGCACTGTTTATTGAACCTAGAACGGTGAAAGGTTTTTGGCAATATATATTAGATGAAGACTATTATCTTACTTATGAAAATGTGCTATAATTGTAAAAAATGGGCCTTGAAAATTTAATATGCAAAAATAAAACATTCAATTCTGAAGTCTTGCCATGGGCGAATAGCGCGATTACGAGATCTCAATTTTATTCTACGAG # Right flank : AAAAGTTTCAAAAAAGGGGAGGGGGAGTAGTATGCGTATAATTATTTCACCAGCAAAGAAAATGAAAATTGATACTGATGCATTTACGTATGAACAATTTCCGCAATTTCTTGAACAAACGAAAGAATTGTTAGCGCATTTACAAACACTTAGTTATGATGAGTTAAAAAAGATCTGGAAAGCTAGTGATAAAATATCGACAGAAAATTATGAACGCATTCAACATATGGATTTAGAATCAAATCTAACACCGGCGATTTTATCGTATGAAGGTATTCAATATCAACATATGGGGCCAGGTGTGTTTGAGCAGCAACAATTCGATTACTTACAAGAGCATTTGAGGATTCTGTCGGGGTTTTATGGTGTTTTAAGGCCATTTGACGGCGTGACGCCATATCGGCTTGAAATGCAAGCAAAACTGCATGACGATACATATAAATCAGTGTATCATTTTTGGTCTGATCAATTAGCAAAACAGTTATTTAGTGAGACAGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGAATTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 674-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLL01000039.1 Halolactibacillus alkaliphilus strain CGMCC 1.6843 sequence39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 673 31 100.0 36 ............................... CCAGTCGGCATTGACATGGAACCTTTGCACCCTAAG 606 31 100.0 35 ............................... ATATATATCACTCCTTATAATTTTAAGAAATAAAG 540 31 100.0 36 ............................... CCAGTCGGCATTGACATGGAACCTTTGCACCCTAAG 473 31 100.0 35 ............................... ATATATATCACTCCTTATAATTTTAAGAATTAAAG 407 31 100.0 35 ............................... TTCACCTTTACACTTTGGACAAATAACTTCCCTTG 341 31 100.0 35 ............................... TATTTTCATCGCTAAAATCAATGTGATATTCTTTG 275 31 100.0 36 ............................... TTAGTTTCACCGTTTACCTCTTTTTCCGTTATCTCG 208 31 100.0 35 ............................... AATCAAAAAACCATTTAAAGATTATTTTGTTAGAG 142 31 100.0 34 ............................... AGATAAAGTTAATGCTATACGTTTATTAATATTG 77 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 10 31 100.0 35 TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Left flank : TTAGAAGAATATCCTCCGTTTTTCTGGAAGTAGGTGATTGGATGCTTATTTTAGTAACATATGATGTTCGTACTTCAAGTATAGGAGGGACAAAGAGGCTAAGAAAAGTATCAAAGATTTGCCAAAATTATGGTCAGCGTGTGCAAAATTCAGTATTTGAATGTATTGTCGACTCTGCCCAATTCACTGAATTGAAATATACCTTAGAAAAAACTATAGATGTTCAAGAAGATAGTTTAAGATTCTATCGCTTAGGAGAAAATCATAAAAATAAAGTGACACATATCGGCACTAAAGAGTCTATTGATATAGAAGACCCACTTATTTTTTAGTGCGAATCATAAGCGCACATAAATTCTTTTAGTCATTCGCACTAAAAATTGCGTCAATTAGTCATTATATTAGATAAAACGTTTTAATATCTATATATTATTGAGATGAAAAGTGGAATAATAGTTGTTTTTTTCAACACTTGTGCTTAATAGTTGAAAAAAACGCAG # Right flank : TAATAAAATTACCGGTGCTCGTGCTTAATTTAAAGTCGCACCCCATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 112462-111699 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLL01000007.1 Halolactibacillus alkaliphilus strain CGMCC 1.6843 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 112461 31 100.0 36 ............................... TTTTGTACCATCCCAGACAGCTTTCGTTTCTTATCG 112394 31 100.0 35 ............................... TTGATTCAGCGATTATTAATGCTTCGTGCGTTGCG 112328 31 100.0 37 ............................... TAAACTTTGATTTAGTATTACCATTTTTAGCACCAGG 112260 31 100.0 35 ............................... ATAAGATAAGCAAGACAAAAACAAACGAAAGAAGG 112194 31 100.0 35 ............................... GCTCAGTTAAGAATCGGTACAGATGACCGTAAAGG 112128 31 100.0 35 ............................... TTGAAAAAACGGATCGAGTGTATCAATATCAATCG 112062 31 100.0 36 ............................... CAGACTGTTCAACGGTTATTATGCTAAGACCAACGG 111995 31 100.0 36 ............................... TCGCCATTAGAAGTTAAGCGTTCAGATGACGTTAAG 111928 31 100.0 34 ............................... ATCAAAAAAATTAGTTCCAGAACTAGAGCCTAAG 111863 31 100.0 36 ............................... AATAAAGGCGCGTATGACGTCGACTATTTCTTATCG 111796 31 100.0 36 ............................... TTTTGATTAAATGTTAAGTCGTACTCTACACCTTCG 111729 31 80.6 0 .......T..C.A....A.A..T........ | ========== ====== ====== ====== =============================== ===================================== ================== 12 31 98.4 36 TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Left flank : GCGTGGATTGAAATTATCAACATTAGATTGATAATGAGATTCAGAAAA # Right flank : GACGATGAGGTTATGGTACTTTAAAATTAATGTCTGAAAGTATAGTTAATAATATTAAGATATTTTTAATAGTAGTCAAGAACCCTCGTAACTTCAGTCATGGGGTGTTGACAAGAAATATCAATCTGTACCAAGTCATGATCAAAGGGAGTTAAATGATGAATAAAATACTTATCGCGACAAAAAATCAAGGAAAAGTAGAGGATTTTAAAGTTCTATTTGAACCGAAAGGGATTGAAGTCGTCTCATTATTAGATTTGGATCAAACTATTAGTAACATCGAGGAGACGGGAAAAACATTTAGTGAGAACGCAATATTAAAATCAGAAGCCATCTCGTCCTTGCTAAAAATCCCAGTAATTAGTGATGACTCGGGATTAGAGATTGACGCATTAGATGGTGAGCCTGGCGTATACTCTGCACGTTATGCAGGGCTTGAAAAGGATGATCAGGCTAATATTGATAAAGTGTTAAGTAATCTAAAAGGTATCAATGAAAAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //