Array 1 9109-7471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEC010000030.1 Flavobacterium psychrophilum strain 6739/19 contig00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 9108 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [9104] 9032 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 8956 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 8880 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 8804 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 8728 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 8652 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 8577 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 8501 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 8425 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 8349 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 8273 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 8198 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 8122 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 8046 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 7971 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 7895 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 7820 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 7744 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 7668 46 100.0 30 .............................................. AATCAAAATAAGGTTTTAAAAGCGGCTTGG 7592 46 100.0 30 .............................................. AGGGCTTCGATTTTCTCGGGTTTCCATTTA 7516 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 22 46 98.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEC010000067.1 Flavobacterium psychrophilum strain 6739/19 contig00067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 70 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 139 42 97.6 27 ...T...................................... GAGTGCAAAAGCACCTCGATTAATAGT 208 42 97.6 27 .A........................................ CTCTGCAAAAGACCCATCTCCAATAGT 277 42 100.0 27 .......................................... ACTGAAAAAAGCACTATTTTCAATATC 346 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 415 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 484 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 96.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAAC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEC010000081.1 Flavobacterium psychrophilum strain 6739/19 contig00081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 70 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 139 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 208 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3830-3663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEC010000035.1 Flavobacterium psychrophilum strain 6739/19 contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3829 29 100.0 40 ............................. CCGATGTTAAACCAAAACAGCCAAAAAAAGCAAAATTTTC 3760 29 96.6 40 ........................T.... CTGATATTAAACCAGAACAGCCTGCAAAAATACCCCTTCT 3691 29 96.6 0 ....A........................ | ========== ====== ====== ====== ============================= ======================================== ================== 3 29 97.7 40 AATAGCAGTCACAGAATTAGGAATGGTAA # Left flank : TCCTAAAAAAGGAATTAAAATGACAAATAATAATTTTTTCATGTTTTTGTTTTTAATTATTGTATAATGATTGTTTTTGTTGCTTTACCTTGGTTTGTTATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTGTTTCTAAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAATCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCGCTTTCTATTGCAAATGAATGATTAGAAAGTAAACTACCAGAAATAGGGCTAAAATTCCTCCAAACCGCGGCTGCCTGATAAACGGCTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAACATTACCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTTCTTAAACTGCTACAGTCTGCAAAAGCACGCTCTTC # Right flank : TCGATGTTAGACCAGAACATTTTTCAAAAGCAGCATCTCCGATAGATGTAACGGTATTGTTAGGGATTGTAATTGATGTTAAATTAGAACAAAGCGCAAAAGCATCCTTTTCGATAGATCTAACAGAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGTAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATGGTATATCTTATATGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAAAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTGATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGCAGTCACAGAATTAGGAATGGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //