Array 1 2192-1567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000114.1 Fusobacterium necrophorum DJ-1 contig0114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2191 30 100.0 37 .............................. AATCTTGCTATTTTAAAGTTTCCACCCAACACATCTA 2124 30 100.0 35 .............................. TTTGGAGATTTTAAAGTATTAGATCGAGAATATAA 2059 30 100.0 36 .............................. AAAATCAGAATAATAGCAAAAACAATGTTGATGAAA 1993 30 100.0 37 .............................. AATGGAAGGACGATTTTATTAGAGAACATGCAAGGAA 1926 30 100.0 35 .............................. GTCAAAAATAAGAAATTCATCAAAAATTCCTGCAA 1861 30 100.0 36 .............................. TTGGAACATCTGTATAATATTGATTCACTTTCATAA 1795 30 100.0 36 .............................. CTGCTTTTCTGTATTTATAATTTCATTGGAAATTAT 1729 30 100.0 36 .............................. TAAATAATACTTCAATATTAAGTTTCTTGCATATTT 1663 30 100.0 37 .............................. AACGACAGCATCGTATCTCGCTGCAAGCTGTAAAACT 1596 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : ATATT # Right flank : TTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGGATTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAATTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTGGAAAGTAAGTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGTATTCATCTAATTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 567-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000157.1 Fusobacterium necrophorum DJ-1 contig0157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 566 31 100.0 36 ............................... TTTCTCTTTCAGGAATCTGTATTTGAGTTCCTGTCA 499 31 100.0 35 ............................... CATAAAAATTTCTATTTATCTGATTCAAATTAATT 433 31 100.0 36 ............................... TGCTTTTTCTTCTGTAAATCCATAATCCTCGATTAA 366 31 100.0 36 ............................... GTTAAATTTCCCTGGTCATTCTATGCCGGGTATATT 299 31 100.0 34 ............................... AAATATTATTAGAAATTTTTTTGTAAAAATCTCT 234 31 100.0 35 ............................... ATATAGAAGAAGATAAAACTGGAATTAAAACTTAT 168 31 100.0 35 ............................... GCTATTAATACATTTAATGCAGCTCCATCTCTTAC 102 31 96.8 36 ..............................A ATAAGCTTTGCTTGAATCATAGATAATTCTTTTGGA 35 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 99.6 36 ATTAGAGTATTACTAGAGTAGAATGTAAATT # Left flank : AGG # Right flank : TTTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 955-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000169.1 Fusobacterium necrophorum DJ-1 contig0169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 954 30 100.0 37 .............................. AAACTTAGCCACCGTGGTTGAAAGACATCAGAGTGTC 887 30 100.0 37 .............................. GATTTTCATTTGGTGTTAAGTAAGGAAGCGGAAACGT 820 30 100.0 35 .............................. GTCTGACGACTCGTATGACGTATCGTGTGACGATG 755 30 100.0 38 .............................. CACTTTACAAAGCATCTGCGAAAGGGGAGTTCCGACCA 687 30 100.0 36 .............................. AAATAAGACTACTTCTCCAAGATAGAAATATCAAAG 621 30 100.0 37 .............................. TGCTTTCTATTTCTAAGAGTTGACCTATTTTTATAAT 554 30 100.0 36 .............................. AAAAAGCGTGTGGGGACAACAAAAATATATTTAAAG 488 30 100.0 36 .............................. ACCTAATAGGCTTTCTTGACTACATTTCAATAATTC 422 30 100.0 35 .............................. ATGCAAGAAGCAATCAAAGCAGAGGCAACAATAAG 357 30 100.0 35 .............................. ATTCCAGCAGTTGAACGAGGGGCTGGAATTGTTGC 292 30 100.0 36 .............................. TAGGAATGGTATTTAATATATTTACAGTTCCAACAT 226 30 100.0 36 .............................. AGCACAAGACCAAGATGGATTACCTTTTTTTTCGAG 160 30 100.0 36 .............................. TTCTAAGAAAAGCGGAGGATTTAGCCGCTTGGGCGA 94 30 100.0 34 .............................. CGGAAAGAGTAGAACCGCCACTAACTTAGTACAA 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 36 ATTTACATTCTACTCTAGTAATACTCTAAT # Left flank : TGTAAAA # Right flank : T # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTCTAGTAATACTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 40-1589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000199.1 Fusobacterium necrophorum DJ-1 contig0199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 40 30 100.0 36 .............................. ACTCTTGTTGTAGAAAGTGACAAGAGGGAAGCAATT 106 30 100.0 36 .............................. ATAATGTTTTCGTTTTTATCCGCACTAGCACTATAA 172 30 100.0 35 .............................. GAATCTTTAAATGGTAAACGTTTTTTTACACATTG 237 30 100.0 36 .............................. TGAAAAAAGCAATTAGCTTGATTTCTATGGGATTTA 303 30 100.0 38 .............................. AAAAACAAACATATATAAATAACGCTAGTTTCTAATAT 371 30 100.0 36 .............................. GCATTTCTGTCAATGATAGAAAGTTTTTGGAATTTC 437 30 100.0 37 .............................. ATAGTCATATTCTGATAATTTGAGATATGGAGAGTAT 504 30 100.0 36 .............................. TTATTGTTTGCATCACAAAATTGAATCACTTCTTTG 570 30 100.0 36 .............................. GCAATAGCTATATGCCATGTTTCTTTTTGAAATTCC 636 30 100.0 36 .............................. GAAGAAGTGCAATATATCAATGCACATGGAACTTCC 702 30 100.0 38 .............................. CTACATGATACCTATCATTTCCGCATTCTTTACATTTC 770 30 100.0 35 .............................. TAAAGTGCCATAAGCACCACTTATAGTCTGATTTC 835 30 100.0 36 .............................. CCACTTTTCCATACAATTACGTCCTGTTTTTCTTTT 901 30 100.0 36 .............................. TTTGAAGAAAAATTTGAATTTGATGATGACTATGCA 967 30 100.0 36 .............................. GCCACTTCAGCGTCATACAGTGCTTGGTGAGTTTGA 1033 30 100.0 36 .............................. CAACTTTTTTTTAAAATATCGAGGAATAGCGACTTT 1099 30 100.0 35 .............................. GAAGAGATACAAGCATTAGAAAAAAGAATAGATAA 1164 30 100.0 37 .............................. TATGATAACCCGGGACGGATATGACACGGAAGCTCGT 1231 30 100.0 36 .............................. TTTTAATTGCAGCTTTTTTTCATTTATTTCTAATTC 1297 30 100.0 36 .............................. GAAGCCCTGCTTGATAACGATGTTGAGTATTTGTCA 1363 30 100.0 36 .............................. CCTGAAAAATATAAAGTAATTCATAAGAACTCTCAG 1429 30 100.0 35 .............................. TCTTCCATGCAGTTGTCGTCTAAGTCGATATCGAC 1494 30 100.0 36 .............................. TAGTATGTTTCTGGATACTGTTTTGCAATTCCTTTC 1560 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.9 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : ACAATGTTAGATTGGAAACAAAAGCTTCTGTAAACTTCAG # Right flank : TTGAAAATTTTAAAAGAAATAAGGTCTTCTTCAATTAGACTAAATCCCATTTTAATTGTGTTATTCAGATATTTTACTTAGCATTTTTTCGCTATTTTAGCACTTGTTTTTTTATTTTCTAAACTTATAAATCTTCATGCTTTTTTCTTGTATTAAGAATAATGAGAGAATAAGAAGAATTTATTTAGAAGAAGTTTTTCTGGAATACATTTAAAAAATATATTATAGAAAGGATTAAATGGAAGATTTAAAATTAAAGAATATAGAAATAAAAAAGGAGTTGATGTAATTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000233.1 Fusobacterium necrophorum DJ-1 contig0233, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 37 .............................. AACACTTCTTCTTTTTGCAAATTCGGAACATTTTCCA 75 30 100.0 36 .............................. CAATAAATTTTCACTCCAATCTTTCCATGTTCCGTT 141 30 100.0 36 .............................. TCCAAAATGTTAAGAACAGTGAACACACTGAAAATA 207 30 100.0 36 .............................. TCTTTACAAAATTCTTGGGGAAATCTACAAAGCAAC 273 30 100.0 36 .............................. ACTACGAAGATTTAGGAGTAAAACACGCTCATGAAA 339 30 100.0 35 .............................. AAGTATGGGAATACACAGTCAAAGATAGCTATAAC 404 30 100.0 36 .............................. GAACTGGTGGTCGAGTTTTTCATCAACTGTGAAAAA 470 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 ATTTACATTCTACTCTAGTAATACTCTAAT # Left flank : ATGATTCA # Right flank : TCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTCTAGTAATACTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 9-2829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000235.1 Fusobacterium necrophorum DJ-1 contig0235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 36 .............................. AGACGCAATCCCGTACGACTGTGCTATGTATTTCGA 75 30 100.0 35 .............................. CATGAAAGGGTGATTTCAGTAAAAGATACCGTTCT 140 30 100.0 38 .............................. TGATACTCAAAAACAGTCCCTTTTCTAATTTCAACCAT 208 30 100.0 36 .............................. CTTAATAGATAACTATATAACAGATAGCGGATTGGT 274 30 100.0 35 .............................. CTAGAAAACAATATCAAGATCCCTGTTTCTTTTTT 339 30 100.0 38 .............................. TCATATATTCCGTTTGTAGCTAACACGGTTCTCATTTC 407 30 100.0 37 .............................. ACAGGGATAAGATAGTTGATCCGCCAATCAACTTCTA 474 30 100.0 38 .............................. TATAATGATTTTTATATTAAAAAATCTGCTCTCAAAGA 542 30 100.0 36 .............................. GAAGAACATCCAGCATTCATCTAGCACCAAAATAGT 608 30 100.0 36 .............................. TTTTTTTTCAAATTTTAGCCAAGATAATATTTTAAA 674 30 100.0 36 .............................. ACACATGTGTCACTTCTCTTCTTTTTATTTTTTATT 740 30 100.0 36 .............................. TTCTACTCCTCCTTCTATACTTTCTTTAGAATATAA 806 30 100.0 36 .............................. CATATTCTGTTAAATTTAACTTAAACATTCTTGTTC 872 30 100.0 36 .............................. AGAAACCGCAAAGCATTTAGCAATTCACGGACAAGG 938 30 100.0 37 .............................. AAATTTTAAAACTTTTAAAATCTATTGATTCAGCAAC 1005 30 100.0 37 .............................. CTATAAAAAATCGTTTAATTGTTTTCTCTGTATCTTT 1072 30 100.0 37 .............................. ACCGTTTTTCAAAAAATAATGCATTTAACAAAAATTT 1139 30 100.0 37 .............................. TTTGATAAGGTGATAATTTTAGCGGATGGAGAAAGAA 1206 30 100.0 37 .............................. CCTGCTTCTTCCACGATAGCATTATATAATATTTATT 1273 30 100.0 36 .............................. AGAATTTTATATATTGTTTTCTTCCTTTAATTTTAG 1339 30 100.0 38 .............................. GAGCTGGAAGTCATGATTGGATTGATTATCATTACGAA 1407 30 100.0 37 .............................. TGTTTCCATCTATTTTAGGGATAGATACATATTTGAT 1474 30 100.0 35 .............................. TCTCAAAAGAAGACGAAATGACTTGCTTGGAACAT 1539 30 100.0 38 .............................. ACAGGCTTAACAGATGAGATGAAAGCTTATGAAGTGAA 1607 30 100.0 37 .............................. CGATTTAGGGTGCAATGCAACTTTAATAGGGTTCATA 1674 30 100.0 37 .............................. ACAGATGTGGAAGTTACTTCATTGTATCCGTCTATCA 1741 30 100.0 35 .............................. CGAAAACAAATGTAGCTTCTGCATTTCTAACAAAT 1806 30 100.0 37 .............................. GAATGGTAAATTCTTAATTTCCAATCCATGTTCTCCG 1873 30 100.0 36 .............................. TCATGTCTTGTGTATTTCTTGACCGATTGTTGTTTA 1939 30 100.0 36 .............................. GCCAATTCACGATGGCGATTCGACAAGACCAAGCGA 2005 30 100.0 37 .............................. AACGTCAAAATAAACGGTCGAGTTGTAAAAGTGATTT 2072 30 100.0 38 .............................. GTAAAAAGTTCTATATCTTCCAATGTGATTGCCCCTTG 2140 30 100.0 38 .............................. TTATCGCGGAAAATCCTGCAACAAAGGAAGAATACTCC 2208 30 100.0 36 .............................. CCAGCCACAATGAGGACAATGGTTTTCAATCATAAA 2274 30 100.0 36 .............................. TTTACCGTCTTGTTCTACGGTAAAACCTATGGAAAT 2340 30 100.0 36 .............................. TTCGTACACATATTTCGCTATTTCTAGCGATTCTTT 2406 30 100.0 37 .............................. CAACACCTGAATTTATAACTCCTTCATTTTAAGGTAG 2473 30 100.0 37 .............................. ATCTATCTCATATTTTCTTCTCTTTGTTTTAATTTTT 2540 30 100.0 35 .............................. AAAAAAAATAAAAATGCAAGCTTTACTATTGTAAA 2605 30 100.0 35 .............................. TATCGAGTTTTAGATTCTACTTCATCTAAAAAGGT 2670 30 100.0 35 .............................. CAAGTTTAATAGCTTGTCTTTCACAGAGTGAGACT 2735 30 100.0 36 .............................. ATATGCCCCCTGTGACCCCCCTGAAGTAAATGATTC 2801 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.9 36 ATTTACATTCTACTCTAGTAATACTCTAAT # Left flank : TAGTACAAA # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTCTAGTAATACTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1-893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000312.1 Fusobacterium necrophorum DJ-1 contig0312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 29 96.7 36 -............................. GAATCATTTCTCCCACATCGTGGGATCTGAGTGGTG 66 30 100.0 35 .............................. CAAAATCTAAGAACTATGGCAATGACACTACTTTT 131 30 100.0 36 .............................. ACTTGAACATTTAAAGGATAATATTCTGTATTTGTC 197 30 100.0 37 .............................. AGAGCAGTTGATTTTGCATATAAAACAATGGGGACAT 264 30 96.7 38 ...................C.......... TAATACTTTTATCTGTACTTACAATTTCTAATAATTTA 332 30 100.0 36 .............................. CATTTCTCCTTTAATTCCCTTCTCCCAACCAGAGGC 398 30 100.0 36 .............................. GCCTATCCCCACCAAAACCAGTTTGCCCAATTCTTA 464 30 100.0 36 .............................. CCTGAATTCTACTCCCAGTTTAGTTAATCCGTCTAA 530 30 100.0 36 .............................. GTTAAAAAATAAAACTCTATCCATGTAAGCACAATT 596 30 100.0 35 .............................. TGGGAAATGAATTGATTATTACTGTTTATACTGAA 661 30 100.0 38 .............................. ATTTTTCATTTACACAGCAACTTGGAGTTTACCTATTT 729 30 96.7 37 G............................. GTATCTGCATCTATTTCTTGTAATGCTGCCTTAATGT 796 30 100.0 38 .............................. AAAGGTCGGTATATAGTAGGGTATCAAGATGGAGAAAT 864 30 93.3 0 ......................G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 98.8 37 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : | # Right flank : GTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAATTTAAGTTGTAAAATAAAGTGTCACACTAAAATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 639-2665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000280.1 Fusobacterium necrophorum DJ-1 contig0280, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 639 30 100.0 37 .............................. TCTTCTAATTGTAGTAATGTATTGTTCATTCTATTAT 706 30 100.0 36 .............................. ACAATTAGTTCAATACTATAAATTGTTGTGAAAGTC 772 30 100.0 37 .............................. CATAATAAATACTCGTTCTATTTCACTTGACCAGGTT 839 30 100.0 37 .............................. GCCCATACTGCGTTCAGTGGAATCAAATGCGAGAAGA 906 30 100.0 37 .............................. ACTTCTATATCCCTAGTAATTACGTACATCCACAAAA 973 30 100.0 36 .............................. AAAGAAATAACTTTTGATTTTTCTTTTGCTTTCCAT 1039 30 100.0 37 .............................. GTGCCTATATTTGATGTCGATAAAAAAGCAGAGGAGC 1106 30 100.0 36 .............................. TTTTTTGCGTCAAAAGCTACGTATTTTTGAGGTACT 1172 30 100.0 38 .............................. ATTTGAAAGATACACTGTAACTATCAACAAATAGAGGT 1240 30 100.0 37 .............................. ATACGACTATGCTAGATACTACCAAGACTAACCTGGA 1307 30 100.0 37 .............................. TGGAGTCCGGAGCAAGTCTTTGATGATGGAGAGAAAA 1374 30 100.0 36 .............................. AATAGGACACTCTTCTTTTAACTTTCCATTCTCATA 1440 30 100.0 38 .............................. TGAATGGAAACTTTGACAGACTTCGGAAAATTCCAACA 1508 30 100.0 36 .............................. TCTTGCTGGAAATTTATGTATCCATTTTCCTTCCCC 1574 30 100.0 36 .............................. CCAATTGATAAAAATACAGATGAACGATTTGTGAAT 1640 30 100.0 36 .............................. TTGAGAAGAAAAACCATTGGCAACATATTTTTTTAC 1706 30 100.0 36 .............................. TACTTCCAGCTATGATATACCAGCCTTTTTTTGCGT 1772 30 100.0 36 .............................. TTTTTCTTTGTTGTAATAAATCTTTCATATTTTGCA 1838 30 100.0 38 .............................. TTGCAGAATCATAAGTTCCTATAACTTTTGTTCCTTGC 1906 30 100.0 35 .............................. CTATCATCATTGAAACAGGAACTCGGTTTAATATT 1971 30 100.0 35 .............................. GTTAAAAAATAAGTGTTTTTATCACTGATTCGAGG 2036 30 100.0 38 .............................. TGAACTTTATAAGAACCAGGATATTCTTGAAGATTTTT 2104 30 100.0 36 .............................. AAATTAGGAGGTATTTTATGAAGTTATCAAAATTAA 2170 30 100.0 36 .............................. ATTCAAGTTTTGTAATGAAGTAACTTTAGCGGGATT 2236 30 100.0 37 .............................. TTTAGTGAAAGTTTATATTTATTATCAAAAGAAGAAA 2303 30 100.0 36 .............................. TTAGGAATAAGTAAATATCTTCCAGTAACTGTATCA 2369 30 100.0 36 .............................. CATGTATTCAGTTGTTTCAGTTTTATGCAGTTGCTG 2435 30 100.0 36 .............................. ACGGCAAAAAACAGTTTAACAGCGAATAATAATGCA 2501 30 100.0 37 .............................. GTTTGTCCTCCTTTCCAAGCTCCTTTGACTACCTCTT 2568 30 100.0 38 .............................. AGAGGAACTGTATTACAGCCAATTGAGGTTGGAGGATC 2636 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 100.0 37 CTTATAATAGAAACAGAGTGAAATGTAAAT # Left flank : CAAGTGCAATTGATTTTACATATCAGACCGGAAACGGTAGGGGAGAAGAAAGTATTTCAAAAGAGGAAAAAATTCGTCAGCATGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTACCTTACTTAAAGGAGTGAAAATAGAGAAAAAGATAACAATAAATTCTTATCAAAAAATAAAGGAGTTTCATTTGTAATAGGCTTTGTATGCATCTAGAAATGTTTTAAGTTATCACCAAAAGAAAAACATTAAAAACATTTTTAAGAGTTAAGGATAAAAAAGTATATTGAAATGAAATAATATGAGGGTATTTTTTTGCTTGTCGACCCCCAATAATGTAAATTTCCTAAGAGGTCGACAAACTACTTCTAATAAAGGACTAGAGATGATTTTTGACATTTTTTATTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTCGACAAATTTGGGAGTGAAAATCAGCTAAAATAAAAGACTTTATCTTATGCGG # Right flank : TTAGTAATCACAACATCAATCGTTCTTGCGATTAAAGCTTATAATAGAAACAGAGTGGTCTTGTGGTTTGATAGGGATACTTATAAGGTTTTTAATTTTTCAAAGGTTTTTATGATGAATGATATTACATTTAGGATACAATATAGTCTATGAAATGAACTATTTGGAACTTTGAATAAGAGAATAAAGAAATGGATATAAAAGATGAAATGATGATTGTAAGTCAGGAATCCCTTGAGAAAAAGATTTATATTATTAGGGGACAAAAGGTCATGCTTGACTTTGAATTAGCCGAAATCTATGGATATGAAACAAAGGCTTTTAATCAGCAAGTAAAAAGGAATATTGAAAAATTTGATGAAGATTTTATGTTCCGATTAACTGACGAGGAAGTCTCTAAACTTTCAAGGTCACAAAATGTGACCTTGAACAAGAGTGCAGGAAGAGGTAGTAATATTAAGTACAATCCTCATGCTTTTACCGATCAGGGAATCTATATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGAGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 3515-3742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000346.1 Fusobacterium necrophorum DJ-1 contig0346, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3515 30 100.0 35 .............................. AACATCGCAAGAGAGTTTCAACTAGCAGACTATGA 3580 30 100.0 37 .............................. CGATTTAACAAAGGAAACATATAAACCGGATGATTCT 3647 30 100.0 36 .............................. AATCTAATTCTTGGTTTTTATCCTGATTGTTCATAT 3713 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 CTCATAATCGAAGCAGACTGAAATTTAAAT # Left flank : CAGCGTGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTATCTTCTTAAAGGAGTGAAAATAGAGAAAAAGATAGCAATAAATTCTTATCAAGAGATAAAGATAGTCTCTTGTGAGTATGATTTCTGGGTAGGATTGGGGAAGATAAATAAGGCAAAAGAGAAGGAATAGGATAGAAAGGAGTTTCATTTGTAATAGGATTTGTATGAACCTGGAAATGTTTTAAGTTGTTACCAAAAGAAAAACATTAAAAACATTTTTAAGGGTTAACGATAAAAAAGTATATTGAAATGAAATAATATGAGAGTATTTTTTTGCTTGTCGCCCCTCAATAATGTAAATCTCCTAAGAGGTCGACAAACTATTTCTAGTAAGCGACTAAAGATGATTTTTGACATTTTTTGTTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTTGACAAATTTGATGGTAAAAATTATTTGAAATAAAGAACTTTATCTTATGCGG # Right flank : TTATCCAGTATAAACCCTAGCTTATCGCCTTGAATCATTCATATTAGTGCTACTTTCATTTCTTTGTCTCTGAGAGAGAACTTTTTTCTGTATTTTCTTTCTAAAGTTTTTTAATATAATTTTTTATTATTCTTACTTAATGATAGGAAATACTATTGGCATTAAAATACTTAAAATATTGGGAGTTTTATAAAAAAGTGCTAAGACAGAAAGTAGAAATATAATAATAATTTTAAAATTTAATTTACTTTGGAATACGATAGATATGAAATATTAAAAAATGATTAGTTTATAATTAAATATATATTTAAAATTCATGAGATGGAGGTAAACTTGGTATGAGACTTAAGTATGGAGCGGTGTTATATGTTGATAATAAAGGTAATAAACATATTGGATATTACGATGATGACGATGAAGAAGGAGCCATCATCTATCAGGGAGATTTCTTTTTGTCAAGAGAATATCTTGTTATTCCTTATAGAAGATGTACAAATAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAATCGAAGCAGACTGAAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 8652-9077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000346.1 Fusobacterium necrophorum DJ-1 contig0346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8652 30 100.0 37 .............................. GAGCTAAGAACAAATTTAGTTTTATCTACAGATAAAA 8719 30 100.0 36 .............................. GAAAAATTTAATGCTTTGACAGAACAATTTAACAAG 8785 30 100.0 37 .............................. ACTTATACAAGGCAGAAGAACTTTTATCTAAGACACA 8852 30 100.0 36 .............................. TTGCAATAATTGTCAATATCTCTTCTTCTATTATCT 8918 30 100.0 36 .............................. TTATTTCTATTATTTCATCATCTTTCATGTATCCCA 8984 30 100.0 36 .............................. TATCTTTAGATAAAGTATTTACTTATAAGAAAATCA 9050 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTTCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTCCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : | # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 2165-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAD01000099.1 Fusobacterium necrophorum DJ-1 contig0099, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2164 30 100.0 36 .............................. ATGAGTAAAGAGTATCAAGCAAGGCATATCAAACAA 2098 30 100.0 37 .............................. AAAGGAAATTTTGGAAAGATAGGAGAATTAGAAATAT 2031 30 100.0 35 .............................. CTTGGATATGATGTAGGAGAGGACAGAAAGTATGT 1966 30 100.0 36 .............................. TGAGGCTAAGTATAGACTTGGACAATATCAGAATCC 1900 30 100.0 36 .............................. TTCGTAGAATGTAATGAAAATTATGATATAGATAGC 1834 30 100.0 35 .............................. GTATTATCCGTTAAATATAACATCGAAATGTTATA 1769 30 100.0 37 .............................. TTGGATTAAAAATTGTAGGAATAATTTGAAAAAAAAC 1702 30 100.0 36 .............................. ACTGAAAATATGAGAATAAACTAACTCCAAAAAATC 1636 30 100.0 35 .............................. AATGAATTGAATCATGAGCAAGCAAAAGAGTTAAT 1571 30 100.0 37 .............................. CAGACACAACAGGTTGATAACAAAGTTCTTTTAGCTC 1504 30 100.0 38 .............................. TGAATTTTTTAATTAAAACTGCTATAATTCAAGAAAAG 1436 30 100.0 36 .............................. ATGAAAATTAAATCCATTGTTACATCGGCTTTTCCA 1370 30 100.0 37 .............................. GCTTCACAAACTTTGTTCAGATCTGGCATAAGAGCAA 1303 30 100.0 39 .............................. TTTTTGATTCTTTACGGAATAGTTATAATGGCTTTCAAG 1234 30 100.0 37 .............................. TGACAAAATTGGATCAAGTAATTGTAAATATCTATCA 1167 30 100.0 36 .............................. GATGTTGATTTATCTAACTATTACAATAAAACAGAA 1101 30 100.0 36 .............................. TTTTTACCGCCGACTTTTCATCTTTCTTTAACGTAA 1035 30 100.0 36 .............................. GCTTGCAAATTGAAATAAAAGGCATTTCCGTTTTTT 969 30 100.0 37 .............................. GCTATCACTGATAAAAAATCGGGCTTCAACTTAGAAA 902 30 100.0 36 .............................. ACTAATTCCGCAGGATAGGAATTTCCATTTTCCAAT 836 30 100.0 38 .............................. TTGTCATTGGGTCATCTCCTGCTCCCTCTTCAAATTCT 768 30 100.0 37 .............................. GTTTTTCGTATTGTTTGTGATTTAATCCTACAACACT 701 30 100.0 36 .............................. TTCGTACTTTTTCATCAAATGCACCATATCTCGCAA 635 30 100.0 36 .............................. TAGTTTATTTTCCCCCTTTTTAATCAATCATAATCA 569 30 100.0 36 .............................. AAGTGGATGTGTCTTATAACTTCTTGGATATCTCAA 503 30 100.0 37 .............................. AAATGATTGAAACATTGAAACACTGCATTGAGCTTTA 436 30 100.0 36 .............................. AAGTCTGCTGGAGATGAAGGAAGCCCTATCAGTTTA 370 30 100.0 37 .............................. TTTTGGAGAAAGAGGAAAAAGAGCGATGAATTTGCTG 303 30 100.0 35 .............................. GAAGGATGGCTTATTTGCAATATAGAAGCATATTT 238 30 100.0 36 .............................. TAAATGGCGGAAGTAACAAGAATCGAACTTGTAAAG 172 30 100.0 38 .............................. GAAAATTTATCTAAAAAAATAATTTCAATATTTTATTC 104 30 100.0 37 .............................. AGAGAAGATATCAGAGCTTGGTTTGTGTCTACTGTGT 37 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 33 30 100.0 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TGAATCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //