Array 1 6593-6760 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956798.1 Fusobacterium nucleatum strain MJR7757B Scaffold2014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6593 36 100.0 30 .................................... AATCACAAAACTAAATGGAGCAAAGAAGAT 6659 36 100.0 30 .................................... TAATAAATATGACAGTTGATAGAATAAGAG 6725 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Left flank : ATTTAGAAAATTTTTTGTCAGAAGAAGAATTACTAGAATTTTCTAAATTTATATTATATAATAAGTATAAAGTTGTTTTTTTAGAAAATTTTCATAGAAATAAGTTATTTGAAGATGATAATTTAATTATTATAGATAATGATTTATGTGAAATTTTCTAATCTATTTAGTAACATTGAATGATTCGTAACCATTTTGATTAATTTCAGCTTTCAGTATAGACCTAAATATATGAATTGAGTTTGAGAGTAATGTTATTTTAAATAGATTCAAAACATGATTTATTCAATAATACATCAGTTACAGGTTTGAGAGTAATGTTATTTTAAATAGATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTAATGTTATTTTAAATAGATTCAAAACATCTAAATCAGAAAATAAATGGTCCTGGTG # Right flank : CATAAAAGATTACTATAATACTGGTTATGCGGTTTGAGAGTAATGTTATTTTAAATAGATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTAATGTTATTTTAAATAGATTCAAAACTTTCTCTTGACTTTTGACGACAGATATAATGTTTGAGAGTAATGTTATTTTAAATAGATTCAAAACGCTATTGACAGAAAAGGGGTTGAAATATGAGTTTGAGAGTAATGTTATTTTAAATAGATTCAAAACAATGATACAATCAATAGCAGTTGTGTCATCGTTTGAGAGTAATGTTATTTTAAATAGATTCAAACCCAGAAGATGGAGTATTAAGAATTACTAAGAGTTTGAGAGTAATGCTATTTTAAAAACATAGTCTAACATTTTTCTATTTTAAAATAATAAAAAATGGTTATTTGAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 6985-7220 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956798.1 Fusobacterium nucleatum strain MJR7757B Scaffold2014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6985 36 100.0 30 .................................... GCTATTGACAGAAAAGGGGTTGAAATATGA 7051 36 100.0 30 .................................... AATGATACAATCAATAGCAGTTGTGTCATC 7117 36 97.2 30 ..................................C. CAGAAGATGGAGTATTAAGAATTACTAAGA 7183 36 83.3 0 ..............C.........A.C....T..CA | AG [7212] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTAATGTTATTTTAAATAGATTCAAAACATCTAAATCAGAAAATAAATGGTCCTGGTGGTTTGAGAGTAATGTTATTTTAAATAGATTCAAAACAATCACAAAACTAAATGGAGCAAAGAAGATGTTTGAGAGTAATGTTATTTTAAATAGATTCAAAACTAATAAATATGACAGTTGATAGAATAAGAGGTTTGAGAGTAATGTTATTTTAAATAGATTCAAAACATAAAAGATTACTATAATACTGGTTATGCGGTTTGAGAGTAATGTTATTTTAAATAGATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTAATGTTATTTTAAATAGATTCAAAACTTTCTCTTGACTTTTGACGACAGATATAAT # Right flank : ATTTTTCTATTTTAAAATAATAAAAAATGGTTATTTGAAAAATAGCCATTTAAAGTAGATTAAAATAATAATGAAAGAAAAACTCACAGGCTTCCTGTTCAGTTTGAAAATAATGTTCATCTGTAAAAGCATGACTATCAGCATAGCAAACTATCCAATTATCTTCTCCTTGAATTAAACACATATCATTAAAATGTAATTCTGTTGTTATATAATAAGTTTTTAAATAATACTCTTTTGGTTTTTGAGCTTCAACTTCTAAAACCTTTAAAAGTTCAGGAACTGTTTTAATTGGAAGGTAGGATAATAACTTTTGTCTTCTAAGTTCATTCTTTTTTTCTGTATGTAGAGTTGCAAAATATGCCCATATCTTTAAAACAATAACAACAGGTAAAATACAACAAAGAAGAACCATAAGTAAAATTTTAAATAATATCATATATTTTTACCCCTTAAAAAAAATATATTAGTAATCTTCTAAATGTTTTAATTCTAATTGA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.41%AT] # Reference repeat match prediction: F [matched GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 8635-8994 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956796.1 Fusobacterium nucleatum strain MJR7757B Scaffold1966, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 8635 31 96.8 35 T.............................. GGGTTCTTATTTAATTACGCTAAGCCAAATAAAGG 8701 31 100.0 35 ............................... TTATTAAAATCATCAGCTACAATATTAATTTTTTC 8767 31 100.0 34 ............................... TTTTCTTTCTTCTAAGTTTGAAATAATCCTATCA 8832 31 100.0 35 ............................... ATGACTGGGAATACGAGGAAAAACATCCTTACACA 8898 31 100.0 35 ............................... AATGAATGAGATAGGGGAATTACAAAAACAAACAA 8964 31 96.8 0 ..............................N | ========== ====== ====== ====== =============================== =================================== ================== 6 31 98.9 35 AATGAACTAAAAACTTGAAAAGTTTTGAAAT # Left flank : TCTCATTTTCAAAAATCTGTTTTTCGTGGAGATATAACTCCCTCTAAATTAATTAGTTTGAGAAGTGAATTAAAAAGCATAATAGTTGAAAATGAAGATTTTGTTTGTATTTTAAAATCAATAAGTCCTGATGTTTTTGGAGAAGAAACTTTGGGAAATCCAACTCCAAATGGAGAAAATATATTTCTATAATTTAAAAATTTTCCCAAGCAATATTCTAAAAAACTATTTAAACTTTCCAAAATATGATTGTTTTAGAAAATTTAAGTAAAAAATAGAATTGCTTGGGAAAAACATATAAAAAATACTTGTAATATTAAAAAAAATAATATATTATAAATTTATAAAGCTTGAAAAAATAGTGATGAACTAAAAACTTGAAAAGTTTTGAAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAACTAAAAACTTGAAAAGTTTTGAAATAAAGAAGCTTGAAATTCTACTTCCATTTGATTAGCAATGAACTAAAAACTTGAAAAGTTTTGAAATAGATAATATGATGGAAGATGCTGGAAGCTCTATTTATGAACTAAAAACTTGAAAAGTTTTGAAATTCTATTGCTAAATCTTTTAAGGAAATATTTACAACAATGAACTAAAAACTTGAAAAGTTTTGAAATTTTTTAACATCCTCCATAACAGTAGTCATAGAAAGATGAACTAAAAACTTGAAAAGTTTTGAAATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGAACTAAAAACTTGAAAAGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 10286-9924 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956796.1 Fusobacterium nucleatum strain MJR7757B Scaffold1966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10285 30 100.0 37 .............................. GTTTATGTTTTCCTAATAACCAAATATCCCCTTGTTT 10218 30 100.0 35 .............................. TTCTTATATATCCCATCTACTTTTAATTAAAATTT 10153 30 100.0 36 .............................. TGGTATAGATGATATTTATGGATTAATTTCCTATGA 10087 30 100.0 37 .............................. TTACTGGTGGAGTTTATAAAGTTTTAAACATAAACTT 10020 30 100.0 37 .............................. AATAATAAAAAACAATATAAATAAGGAGGATATTATA 9953 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 37 ATTTCAAAACTTTTCAAGTTTTTAGTTCAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAACTTTTCAAGTTTTTAGTTCATTTTTTTAATATTTCAAGCATTTCTTTTATTTGTTCAATTTCAAAACTTTTCAAGTTTTTAGTTCATTCTCCTCATTATCATATCTTTTAGTCTTAGAAAATAATTTCAAAACTTTTCAAGTTTTTAGTTCATAAAAAAGAAGCGAAAAGAGAAAGCAAAAGTTTTAATATTTCAAAACTTTTCAAGTTTTTAGTTCATATTAGAACCAAATACATTTTGGGCAATGAATGAAGAATTTCAAAACTTTTCAAGTTTTTAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAAACTTTTCAAGTTTTTAGTTCATTGAAATAACAGTTGATTACTTTTCTTGCTCAGTTTA # Right flank : TTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAATTTCAAAACTTTTCAAGTTTTTAGTTCATCCACTGGGTCATAAATTGCTGTATTATTAGTTCTTATTTCAAAACTTTTCAAGTTTTTAGTTCATTGTATTTGTGGTAAACCAGGAGAATTACAACATTTATTTCAAAACTTTTCAAGTTTTTAGTTCATAGTTGGAACAGGTATAAGAAAGATTATAGAGTTAAAATTTCAAAACTTTTCAAGTTTTTAGTTCATTTATATCTCCACCAGATATTATTTCATCTTGGGAAAATTTCAAAACTTTTCAAGTTTTTAGTTCATAAGAAAGAAAAAGAATAAATGACTTAGATGCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACTTTTCAAGTTTTTAGTTCAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 10678-10449 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956796.1 Fusobacterium nucleatum strain MJR7757B Scaffold1966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 10677 31 100.0 35 ............................... TCTCCTCATTATCATATCTTTTAGTCTTAGAAAAT 10611 31 100.0 35 ............................... AAAAAAGAAGCGAAAAGAGAAAGCAAAAGTTTTAA 10545 31 96.8 35 T.............................. ATTAGAACCAAATACATTTTGGGCAATGAATGAAG 10479 31 96.8 0 ..............................N | ========== ====== ====== ====== =============================== =================================== ================== 4 31 98.4 35 AATTTCAAAACTTTTCAAGTTTTTAGTTCAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCAAAACTTTTCAAGTTTTTAGTTCATTGTAATAGGTGTATTTTCAGTAAAAAAAGCAATTACATTTCAAAACTTTTCAAGTTTTTAGTTCATGTTCTTGGAAGAGTTTTAAAAGATATCCCAAAGAGTATTTCAAAACTTTTCAAGTTTTTAGTTCATGAAAAAAATGGAAAAATCTAAGAAATGGCAAACATTATTTCAAAACTTTTCAAGTTTTTAGTTCATCAAGAAATATTTGAATTGGATAGAATTGAAAGGCTATTTCAAAACTTTTCAAGTTTTTAGTTCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAACTTTTCAAGTTTTTAGTTCATTTTTTTAATATTTCAAGCATTTCTTTTATTTGTTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAAACTTTTCAAGTTTTTAGTTCATTGAAATAACAGTTGATTACTTTTCTTGCTCAGTTTAATTTCAAAACTTTTCAAGTTTTTAGTTCATGTTTATGTTTTCCTAATAACCAAATATCCCCTTGTTTATTTCAAAACTTTTCAAGTTTTTAGTTCATTTCTTATATATCCCATCTACTTTTAATTAAAATTTATTTCAAAACTTTTCAAGTTTTTAGTTCATTGGTATAGATGATATTTATGGATTAATTTCCTATGAATTTCAAAACTTTTCAAGTTTTTAGTTCATTTACTGGTGGAGTTTATAAAGTTTTAAACATAAACTTATTTCAAAACTTTTCAAGTTTTTAGTTCATAATAATAAAAAACAATATAAATAAGGAGGATATTATAATTTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTCAAAACTTTTCAAGTTTTTAGTTCAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 10842-11069 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956796.1 Fusobacterium nucleatum strain MJR7757B Scaffold1966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 10842 31 100.0 34 ............................... GCCTTTCAATTCTATCCAATTCAAATATTTCTTG 10907 31 100.0 35 ............................... ATGTTTGCCATTTCTTAGATTTTTCCATTTTTTTC 10973 31 100.0 35 ............................... CTCTTTGGGATATCTTTTAAAACTCTTCCAAGAAC 11039 31 96.8 0 ..............................G | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 ATGAACTAAAAACTTGAAAAGTTTTGAAATA # Left flank : GTTTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTAAAAACTTGAAAAGTTTTGAAATTCTTCATTCATTGCCCAAAATGTATTTGGTTCTAATATGAACTAAAAACTTGAAAAGTTTTGAAATATTAAAACTTTTGCTTTCTCTTTTCGCTTCTTTTTTATGAACTAAAAACTTGAAAAGTTTTGAAATTATTTTCTAAGACTAAAAGATATGATAATGAGGAGAATGAACTAAAAACTTGAAAAGTTTTGAAATTGAACAAATAAAAGAAATGCTTGAAATATTAAAAAAATGAACTAAAAACTTGAAAAGTTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA # Right flank : GTAATTGCTTTTTTTACTGAAAATACACCTATTACAATGAACTAAAAACTTGAAAAGTTTTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGAACTAAAAACTTGAAAAGTTTTGAAATAAAAGATTTTGAAGAACTTAACTCCAAGCTTCCAGAATGAACTAAAAACTTGAAAAGTTTTGAAATTTTGGTTGGAGAGTACAGGAATAAAAGAAGATAAAATGAACTAAAAACTTGAAAAGTTTTGAAATTTAAATGTTGTAATTTTTCATTGTCTTTTTTATTTTATGAACTAAAAACTTGAAAAGTTTTGAAATACTTTAACTTCAATTATTTCTTCTTTTTTTGGAGGAATGAACTAAAAACTTGAAAAGTTTTGAAATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAACTAAAAACTTGAAAAGTTTTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 13152-13511 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956796.1 Fusobacterium nucleatum strain MJR7757B Scaffold1966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13152 30 100.0 36 .............................. GCATTATTTCCATTGATTACAGAACCTTTTATTTTA 13218 30 100.0 35 .............................. AGGTTGTACAGTACAAGTTCCAGCCCCATAATTAA 13283 30 100.0 37 .............................. TTTGTTCCAGTTGCTATATATATCTGCTCAACAATTC 13350 30 100.0 36 .............................. ATCCTGGTTGTTACACAAAATAGGAAAGCTGTTAGA 13416 30 96.7 36 ..........................G... AGCATTTGCTCTAAACTTTTTATATTAAATTCTTTT 13482 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 ATGAACTAAAAACTTGAAAAGTTTTGAAAT # Left flank : ATCTCCTATTCTATGCCTTATTTATACATCATCTATGCATGAACTAAAAACTTGAAAAGTTTTGAAATTCTGTTAATATTATTTACTGTTTTTTCAAAGTCTAAATGAACTAAAAACTTGAAAAGTTTTGAAATGGCTTTAAAAAGAGAATGTACTTTAAAAAGAGAATGATGAACTAAAAACTTGAAAAGTTTTGAAATTAGAAAATATTATTATTCTTTTGTCTTTAACTTTTAATGAACTAAAAACTTGAAAAGTTTTGAAATATAGAATAAAAGCACCTAGAAATTAAATTCTAAGTGATGAACTAAAAACTTGAAAAGTTTTGAAATGCTTCTATTAACCTTATTTTTGTTTTATTTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAATTATATAATAGGAGTTATGAAAGAAGA # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAACTAAAAACTTGAAAAGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //