Array 1 14549-13720 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKSH01000004.1 Klebsiella pneumoniae strain EuSCAPE_IT213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 14548 28 100.0 33 ............................ TTCCGGTTACTATTAACGCAGGCGACACCGGTC 14487 28 100.0 33 ............................ TGGTGCCGCCGCCGGTGGTCAGAGTTCGACTTA 14426 28 100.0 33 ............................ TACCGAAAAGGCGCGGGCCATCGATCCGTTTTA 14365 28 100.0 33 ............................ TCCCCTGATCGCTGATTGCCTGCGCGAGTTCGC 14304 28 100.0 34 ............................ ACTGGCTATCGCAGGCACGTTTGGCATTACGCAG 14242 28 100.0 33 ............................ CGAGTCCTGTAAAGAGCACGGCGATATGCTTGG 14181 28 100.0 33 ............................ TTACGAAAACGCCGCCATTTATAAAACGATGTT 14120 28 100.0 33 ............................ CCATGGCGGAGATAGAGACACTATTGAGTGAGT 14059 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGC 13998 28 100.0 33 ............................ CGGAGTGCGCTCGCATACTCACCCTCGGCAGAT 13937 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGA 13876 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 13815 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 13746 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 14 28 99.0 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCGCGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGAAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24185-23302 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKSH01000004.1 Klebsiella pneumoniae strain EuSCAPE_IT213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24184 28 100.0 33 ............................ TGTTAAATTTTGCGCTTTTTATGCGTAAAACTC 24123 28 100.0 33 ............................ TCAATGAAGCTGCGCCGCGCCACCCGCGAGACG 24062 28 100.0 33 ............................ CGGCGGGCCTTATGGGGAGGGATTAAACCTGAT 24001 28 100.0 33 ............................ CGGTACTTCTGCCATTGTGCATGTCGCCCTATA 23940 28 100.0 33 ............................ CTTGTTCGGACCCCTGGGCCTTTCCGCCCTTCG 23879 28 100.0 33 ............................ CCGATAGACGACGTTTTAGTGTCGGCTTTATTG 23818 28 100.0 33 ............................ TGGTTTTCTTGACCTGGCGGCGGTAAACGCTGT 23757 28 100.0 34 ............................ CATGCATCGGGTTGCGATGCTGCGTACTGATCTG 23695 28 100.0 33 ............................ CTGATCGAGGGTGATTTTCGCAAGCGCACCTTC 23634 28 100.0 33 ............................ TATGTTCCAGGCGTTCTATGCCCCTGCTGATGC 23573 28 100.0 33 ............................ TCACCCTGTCCTGCTGGACGTGAAGAAGGTTGC 23512 28 100.0 33 ............................ TCGGCTATTTCTATAAACGAGCTGAGCGGAGGG 23451 28 100.0 33 ............................ TAACCCAGATGTTTTCGATAAAAGCGAAGCCGA 23390 28 100.0 33 ............................ CGAAGATGTTCATCCTGACGATAGCAAGAAAAT 23329 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.5 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCCGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGTGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //