Array 1 14807-18147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKLI010000045.1 Paenibacillus sp. CECT 9249 isolate AB16; 161107 CRN 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 14807 33 100.0 36 ................................. ATTCCTATCCGTGCGGTTGTCTATCCTTGCAACAAC 14876 33 100.0 34 ................................. CTGCTTTCGTCATAAGCGTTTAGAGCGTCTAGGA 14943 33 97.0 32 ................................G TCCTTTTGCCCGAATGATACAAAATCGGTTAT 15008 33 97.0 34 ................................G ATTACCGGTCCGATTTACACCGGTATCGACGATT 15075 33 97.0 33 ................................G GGAAGTAGAGCATACCATAAAGTCGACAAAGCC 15141 33 97.0 32 ................................C TCCAGAAACGTTTACTGGACTAGTAGTATTGC 15206 33 97.0 33 ................................G TTGCTTTTCCTCAGACATGTCTACACCTCCATA 15272 33 100.0 33 ................................. GCTTTTCGACGGTCGCTTCCAATTTTTTGATGT 15338 33 97.0 32 ................................A GACGAGCAATTAGGACGTTGAAAGGCGAATAG 15403 33 97.0 34 ................................A GACGAGCAATTAGGACGTTGAAAGGCGAATAGAC 15470 33 97.0 34 ................................C ACGCTGTTGTAAAACGCTGCCGCCTGCTGATCCC 15537 33 100.0 35 ................................. AAAACGGAAATTAAGAAGGCTGCTAACGGAAATAC 15605 33 97.0 32 ................................A CAGGATGTTACTTACTCAGGCTTTGAATAATC 15670 33 97.0 32 ................................G ATCATTAGAGAGGAGAAGGATAACTAGTTCTT 15735 33 97.0 32 ................................G AACTGGAGATAGGTTTTCGTTGGTATTCTGCC 15800 33 97.0 34 ................................G ACATCTTCGGTCTCGGTCAATTCGACGAAATCAA 15867 33 100.0 35 ................................. AAGAGAGCGGCGCCCCGCAGTTAAAATGCAGACTC 15935 33 97.0 34 ................................A GCACCTTAAGCAATATCGCCGTACGTTGCGTCTC 16002 33 97.0 33 ................................A CCATCGTAAAGGTAAGGCTGCCGGCTTTTCCGC 16068 33 97.0 32 ................................C ACGTCTTACGCGTACAAATTGCGCGTGTCGGG 16133 33 97.0 33 ................................C TTCCTTTAAATCAAAAATAGGATGAGGAAATTC 16199 33 97.0 35 ................................G CCAATTCGCGGCGTAGGCTGAACAAATCCGCACTT 16267 33 100.0 35 ................................. CTCTCCAAATCTCCGATGCGAAATGAAATGATATC 16335 33 97.0 33 ................................G GCAGCGCCGGGAAGTTTGCAATTGGTAATTGTT 16401 33 100.0 33 ................................. TAAAATGGAGGCCATTACAAATGAGCAAACTGG 16467 33 97.0 32 ................................C ATATAACCTTTTTAAACTTTCCTTATCACTTT 16532 33 100.0 33 ................................. CGTACCCCGATCCGAACGACCCGGAAGCGCCGC 16598 33 97.0 35 ................................G CAACATCAGGAGGCGCAAAAGAAGCAACAGATGTG 16666 33 97.0 33 ................................G AGTACGCATGCCATTGGACTTGGTCGGCTTGGT 16732 33 100.0 32 ................................. CCATAAATGGTGAGTCTAAAACTTTGAAATCC 16797 33 97.0 34 ................................G ATGGCGACGATACGATCGTCTTGCAACAGAGCCT 16864 33 97.0 32 ................................A TCAGGAAGATATTTGGTCTTTCGGACGATGAC 16929 33 97.0 35 ................................C AACAGTTACTACAAGCCCTACAACAGGAACCGTAC 16997 33 100.0 34 ................................. ATGAAATGGTCAACGAACCGCCTTTCGGAGGGAA 17064 33 97.0 32 ................................A CGATTCGCTATTTGCAGCAGCGCCTTGATTTC 17129 33 100.0 32 ................................. TATCTTGTTTCGGTGGACGACCCGCCATATCA 17194 33 100.0 32 ................................. GATCGCTGACTCAAGTGATCCATTGTATTCGG 17259 33 100.0 35 ................................. TGTAAAGACGTAAGCTATGCCGAAGTAATGGCAGC 17327 33 100.0 33 ................................. CCTTTCATTCCAAGGTTTTCCCCTCTTCTTGTC 17393 33 97.0 34 ................................C TCGTAACGATGAGCGATGGTTCCCAGAAAGCTGT 17460 33 97.0 34 ................................A GGAAAAAGGCGAAGACGCGGTTGCAACGCAAAAA 17527 33 100.0 34 ................................. TCAAAATCATCCAGCAGTTCGTCCAGCAGTTCGG 17594 33 100.0 33 ................................. TGGTCTTTCCGCGAGAGGGCGTCGTTAAATCCG 17660 33 100.0 36 ................................. TGCAGAGCGGAGGTCATCGCACCGACCGGGCGACCA 17729 33 97.0 35 ................................A TATTATTCAAGATGGAACAGATAAATTTGATGTGG 17797 33 90.9 33 ............TC..................A ATGGCTCTTTAGGATTTTTAATCGTAAGACCTC 17863 33 90.9 34 ............TC..................C TATCTATCAGCAGCCGGAATTATCGGATGTTGAA 17930 33 87.9 34 ............TCC.................C AGCAAGCGGGCCAGATATCACAATGACGTTAGAT 17997 33 87.9 35 .........CT..C..................G TCGAGCAACATGTTGACTCGGATCGGGATACGCCC 18065 33 81.8 17 ..T......CT.AC..................C GAGGATACGCCGGATCC Deletion [18115] 18115 33 72.7 0 ........T.T.TC.........A...T.TC.A | ========== ====== ====== ====== ================================= ==================================== ================== 51 33 96.6 33 GTCGCATCCTACGTGGATGCGTGGATTGAAATT # Left flank : TCCCATTCGGTTTGTTTATGCCGATGCTGTATCCATTTGCCAGAAAAATCTATATAACCGCCTTGCTGGGCTTGGGGTTCTCCGCGACGATCGAATTGACCCAAGTCCTGTTTACAACGACACGCACAGCTACCGTAGATGATCTGTTTTTTAATACGGTAGGCGCGGTGATCGGATTCTGTTGTTTCTATATCGGGAATTGGAAAGGAAAACTGGAGCAGATCGGGTATAAACTTGAGAGGAAAAAGGGCACTGGGTAAAACATGCTTCCGCCGATTACGAGATCGGCGGCCGGACGACGATACGTCAGGGGCAGTCCGTTTGATTCTAAGTGCGAATGTGAAGCGAACATGAATTTGCAGGGACATTCGCACCATGATTTTAACTTTTATTGGTTTTTGTTTCAAAAAATACATTGCGATAAGTAGCGATTTTCTGGGTTTGAGTGTATATTTGATAATAAATAGCGATTTTTTAAGTCATTTTGATGAAAAATCGGA # Right flank : AATCACACGCGGAACCCGGAGCGCTAATCGAACAAACTAACACTCTCATAAACCGAGGGTGTTTTTTGTTTTGTAACAATTAGGTAACGTATCGTAGAAATTATGGGTAATTTGGAAGGGGATTGAAGAATTCTGTCGAATTACTAATAAGCAAGATCAAATAGGTATTTTGAACTGATTATGGGTGAGGGGGGCAGAAATGACTTATATTGCTCACATCCGTGAAATTGACCATCAACAACAAACCGTGGAGGAGCATCTACTAGGGGTCAAAGAGTTGGCGGAATCGTTTGGGGAAAAAATCGGTGTCAAACATATCGCCGGATTAGCGGGCATGCTTCACGATTTGGGAAAATACACGAATGAGTTTAGACAATACATATTAGAAGCGGTTCATAATCCCGATTCTCCGCCGAAGCGAGGAAGCGTCGATCATTCAACCGCAGGCGGGAAATTATTATACAAGCTGTATCATCCCGGGAATGGCCAACCGTATAAAG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGTGGATGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 26414-30432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKLI010000045.1 Paenibacillus sp. CECT 9249 isolate AB16; 161107 CRN 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 26414 33 100.0 34 ................................. CCCAAGGCGCTTCCACCAACGAGCCCGCGGCGTT 26481 33 97.0 33 ................................C ATGCGGCACGAGTCACATACATAGTTACTGTGC 26547 33 97.0 32 ................................T CATTGTCTCCACTATTTACTACAACGTTAACT 26612 33 97.0 33 ................................C CTCCGGGCCTAATTCGACGTTTGCGGCCGTGCC 26678 33 100.0 32 ................................. AAGGTAAGTCCGCTTGAGGTTGTCGTTGACCA 26743 33 100.0 32 ................................. AGGATACTATTCGCAGCAACATGTGCTTAACA 26808 33 100.0 33 ................................. GGGGTGATGTGCGCGCCGATTTAACAGCGCTTG 26874 33 100.0 34 ................................. TTCCTATCAATCATACTCAATCTATAGTTATTAC 26941 33 97.0 32 ................................T CGTTATGCTCGATGTATAGCGCCCGGATATTA 27006 33 97.0 35 ................................G TCTATTTGGACGCGCAGAAGCGTGGTATAGTGGTT 27074 33 97.0 35 ................................C CTTGAGCCGTACAGGGACTTGCACCTTTTCACCTT 27142 33 100.0 36 ................................. TTAAATGGTAAATATGGATTCTCAAATTTTCGTTTC 27211 33 100.0 32 ................................. GAACAAGGGCAAAAGGTTGAATTCTATGTTTT 27276 33 97.0 35 ................................T TTTCCATCTTGTTGAATTTTTACAATCACAGTCTC 27344 33 100.0 34 ................................. TAAACATATTGTAGTTAAAAGTAAACAAAAAGGC 27411 33 100.0 33 ................................. CTATGGACGATAATCTCTCGTTGTCGGAAAAAG 27477 33 100.0 33 ................................. GATCTTGATTTAGATGCCAGCCTTATGGAGACG 27543 33 100.0 32 ................................. ACTAACGAACCAACTACACCGCCAATGTTCAC 27608 33 97.0 35 ................................G TACCCACGGATGTTGCGCAACGAGTGTCTCGTCCG 27676 33 97.0 34 ................................C GCGAAAGTGCATCAATTTGGCCCATCATCGCCTT 27743 33 100.0 32 ................................. GAAACACTAAAAGATGAAATAGAAGGAACGAT 27808 33 97.0 34 ................................C TGAAGGGGCTATACCTGTGATTAAATCAATTCCC 27875 33 97.0 34 ................................T TTTTTTAACTGTTCAGCCCGCGGACGCCGGAGCG 27942 33 97.0 32 ................................T CTCATTAAGCTTATCATAAAACCGTACTTTAA 28007 33 97.0 33 ................................G AAAAAATTAAATTGATATTTGATAGTAGAAAGA 28073 33 97.0 36 ................................G TGTATGTTGCCTATGACATTGCAAACATAATCTAAC 28142 33 100.0 32 ................................. ATTCTACTGCCAAAAATGTTGCTTGTCCTATG 28207 33 97.0 34 ................................T GAATCTTTAATCTCGCAAGTGATTAGTGGTAAGA 28274 33 97.0 34 ................................T TTTATTGCCGCAATCAAAAAACGCGGCGTCTTCC 28341 33 97.0 32 ................................G GCCATATCGATTATGCCGTTGTTATCTGCGAA 28406 33 97.0 33 ................................T AAACTTTCCAGCATGCTGTCAAGTAGTTTTTGC 28472 33 100.0 32 ................................. CTTCGTCCGGCTCGATCAAGCATCCCTTTGCC 28537 33 97.0 32 ................................C TTAACAATCATCCCACGTCGGGCAGTTTTGAG 28602 33 97.0 32 ................................T ACAATCACAATGCCTTTTGGTATTGCGTATGC 28667 33 97.0 38 ................................C ATCGTGCCAGCATGGACTCCACATCTTAATTGGTTCAA 28738 33 97.0 37 ................................T TTTGCTAATTTTTTTGGACTAACTTGTAATACGTCAG 28808 33 97.0 32 ................................C TGTCATCTCAATGGTAAAATATTGAACATATA 28873 33 97.0 33 ................................C GAAAGATACGTTTACAACTTACGAGACCGCATT 28939 33 97.0 34 ................................T ACAAGATCATTCCAATCACTATCATCCGCATCAG 29006 33 97.0 33 ................................T CGTACGTACTGGTTCGTGTACCCCAAGCGTGTC 29072 33 97.0 34 ................................C AACCGTCAGTAACAGGGATGCAACCATTAAAACT 29139 33 97.0 35 ................................G ATGATCCCTGCCGGGCGTAAGCGACCGCCATCTAC 29207 33 97.0 34 ................................G ACGGTGTAGTCGTCGTCCTCCAAGTCAGAAAGCA 29274 33 97.0 33 ................................C AGCGTAAGGATTTTAAGCGCTCCGTGCTCGGAT 29340 33 97.0 33 ................................G CGAATAATCCGCAGTTTATTGGTCACGGATTTG 29406 33 100.0 33 ................................. CCTTTCCATGCACCTCCATTTAATTTGGTTAAA 29472 33 97.0 33 ................................C AATCATCCGTTGCCCTCCTGTGCGCACATATGC 29538 33 97.0 34 ................................T ATTTCAACGAATTTTTCAAATACGTGTATTTTGC 29605 33 100.0 34 ................................. ATGGCTTGCAGGTATGCTTTCTGTACCTCCTCGA 29672 33 97.0 36 ................................G CTATTGATCGTTTTTGTTTTTAACGCCCCGAGTACG 29741 33 97.0 35 ................................T AACGTCACCGTATTCGTCATGATGTCGTCATATAG 29809 33 97.0 33 ................................T TGATCGCGGTTCATTAGACAGCATCCTTTCTAT 29875 33 97.0 34 ................................T ATATTAGATGAAGTATTGAAAAATGGAGAATATG 29942 33 93.9 32 ............A...................C TTTCTGGTTTAAAGGGTGGGCTTGTCCTCTTA 30007 33 93.9 34 ............A...................T CCGAGCATTTCCTGCATTTGCCCCATAGCACTGA 30074 33 93.9 33 ............A...................T TCCGGTGCGGTTACGCGGATGATTACGTATCCT 30140 33 100.0 32 ................................. ACTGCAATCCGGGATATCTGCTTATCATCGAC 30205 33 97.0 32 ..................A.............. AGTTCGCGTTTGCGGAGTTCGCGATCATGTTC 30270 33 93.9 32 ...........T.G................... TGAGCGGCATAAAACGACTCGCAAGAAGATGA 30335 33 90.9 33 ...........TA...................T CCGTTAAAATGACCTCCAGGATTTTATCTTGAA 30401 32 90.9 0 ..............-................CG | ========== ====== ====== ====== ================================= ====================================== ================== 61 33 97.4 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Left flank : TGACGAGTACCCTCCATTTCTGTGGAAGTAGGTGTAATCTGTGCTCATATTAATTACCTATGATGTAAGCACGATGAATAGCGAAGGTCAGAGGAGGTTGCGCAAAGTATCGAAAATATGCCAAGATTACGGCCAGCGCGTCCAAAATTCGGTATTTGAATGCGTTGTAGATGCAACCCAATTCGCTGTTCTAAAGATGAAACTGATGGATGTTATCGATGTGGATCGGGATAGTTTGCGGTTCTACCAACTCGGGAACAACTATAAGAACAAGGTCGAACATATTGGTATCAAAGAATCGATCGATATCGAAGGCCCCTTAATCTTGTAGTGCGAATGTGAAGCGAACATGAATTACTAGGGAGATTCGCACCAGAATTTTTACTTATATTATTGTAATATCCAAAAATAACCTGTAATTAAATGGATGATTTGTGAATTAGAGTGTGTTTTTTGATGAGTAACAACGATTTTTCAAGTTGTTTTGATTGAAAATCGGA # Right flank : GAAGGCGAAGTAAGAAGCGGCCGTTTGCGGCGCAAGCTTGATCAAATCCGGAATTCGCTTTAGATCTGACGGATGGTAATAAGAACGGTTGATAGACATGCTTGATTCCCTCCCATATCGTTTAAGATATCTGCATTGTAAGGGAAGCGAGCGGGAAATTCCGTGACAAAGTCACCGAAGAACCATTAGCGTTGCTTTGAATTTTGCTAGCTGGGATGGTGTCGATAAATATAACGGATTTCGGAGGTCTTATTTTTCAAATTTTAGTCGATTTTTCGGAATTAGCGGATTTTCGAACCGTTAACATGCCGCGGTCAGCCCGGAAATAGTTTGTTTTGTGAAGTTGCGACGAAATAGGGCCCTCAAAATCCGTTAACTCTGCCAAAACAGCGTTTTGGGGAAAAGTAAGGCCTTCATAATCCGTTAACCTATCGTCCCTTTGCTGCCATTGGCTTGAAACACGATAACATTCGATGCAACGCTAGTCACCGAAGAAGTCA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11101-4013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKLI010000050.1 Paenibacillus sp. CECT 9249 isolate AB16; 161107 CRN 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 11100 32 100.0 36 ................................ TCCCCTCCTTGCTGGTCATATTTCCAAAGCTGATGC 11032 32 100.0 35 ................................ GCGTCACCGTCGCCCTCCTTGATTAGTTTTTTAGT 10965 32 100.0 33 ................................ ATCCAGTCGGCATTTACAGTCCATGCTACGTTT 10900 32 100.0 36 ................................ TTAATTGCGGAAAAGCTGACATACGCGCCAATTAGT 10832 32 100.0 34 ................................ AGCCCTCCTGCGCCCGAATTAGTCCAAGAGGTAC 10766 32 100.0 37 ................................ TTTGAAACAATCACAAGGTTGTCGGCGCGATGATCTT 10697 32 100.0 36 ................................ TGAAATAGACGTTATCTAATTGCTTTGTCCATCGAC 10629 32 100.0 32 ................................ AATAAATGATCGTAATAATGTCGGATTTGTTC 10565 32 100.0 35 ................................ TATATGACTTGTAGCATCAATTACAAATTGTCCGA 10498 32 100.0 33 ................................ CAATAGAACAAAGAATAGATTTTGTGATTTCTC 10433 32 100.0 33 ................................ GCCAACCTCTTGCCGCAAAACGTGCGGCAGGGT 10368 32 100.0 37 ................................ CGTATTACTCCTGTGGTAATATTAAATCAACGAAAGG 10299 32 100.0 33 ................................ ACACGTCAAGACATTGAATACATACTAACTAAT 10234 32 100.0 37 ................................ ACGCAAAATAACGGACGAGCGATCGTTGAACAGGACA 10165 32 100.0 33 ................................ TGGCAATATAATCGAGGTCTACGAATACGAAAA 10100 32 100.0 37 ................................ AAAACTTTACAACACACATCAATACCGTAAGGCCATT 10031 32 100.0 32 ................................ ATAACACTTCCAATCCGTCGTCCAGCGCCCGA 9967 32 100.0 33 ................................ TGAAATGTTAATTTCCCTCGCCAAACTCCTCTG 9902 32 100.0 32 ................................ CGACACCAAAATCATTACACCATCAAAAACAT 9838 32 100.0 36 ................................ TGCAATGACTGGCTCAAGAATACGTCCGGCTTTCAT 9770 32 100.0 33 ................................ ACATCGGAAGCTAATGATTCTATCATTCTCTGG 9705 32 100.0 34 ................................ GACATTAAGCAAATATGTTCTTATTTGCTTTGCT 9639 32 100.0 35 ................................ TTGCCGTTCGCATCAGGTGCAACTCCGGTATCGTC 9572 32 100.0 36 ................................ CCGTTGGCGCAATTGTACATAATCCAGTATCCGACA 9504 32 100.0 35 ................................ ACTCGCGAGAAACGGAAGCAAGATTATAACTCGTC 9437 32 100.0 37 ................................ TCCTTTCGCGCCGCCTCCTTGGGGCTGTCGCGCTCTA 9368 32 100.0 33 ................................ GCGAACAATCCGAAGTTTATTGGTTACGGATTT 9303 32 100.0 33 ................................ CTTGAGAATGTCACGCGCCTTTTCCCCAACATC 9238 32 100.0 33 ................................ TGCTGCACCACCAACCTCAACAGCAAACTTTTT 9173 32 100.0 36 ................................ TTTCGGGAAAGTTAATTCCTTTTTAAGTGAACTATT 9105 32 100.0 36 ................................ TTAACATATTCTGGAGATATATTGACTCGCTTTAAT 9037 32 100.0 35 ................................ TTGGATCGTTTGCCGAATTTGAGCGTGAGCGGATT 8970 32 100.0 33 ................................ AAATACACTGCGATAATAGGTATCGGTATAGGT 8905 32 100.0 32 ................................ ACTCATTACCCTTGTCCAACTTAAGGATGATT 8841 32 100.0 33 ................................ AATCCGGTAGCACCGGTAAAGAACTCCCTGCTA 8776 32 100.0 35 ................................ CCCAAAATCTTTGAAAATCTGTTTGCGCCAGTAGC 8709 32 100.0 37 ................................ CGTATAGGTATTTGGAAGGAGGTGAAAGGTCATATGG 8640 32 100.0 33 ................................ CTCGAAGATGTCCGCGTCGAAATTGGGCATCGA 8575 32 100.0 36 ................................ ATTCCGCTGGTGAGCGAGAAATCCGACTACCGGAGC 8507 32 100.0 34 ................................ ATCATCGGCCCATACCTCGCTTACTTTACCTTTG 8441 32 100.0 34 ................................ GTATATCTTGACAGCTTGATGCTGATTTCCGAAC 8375 32 100.0 34 ................................ CATGATGGTAGCCCTCCGTTAACCGTTATGTCTG 8309 32 100.0 33 ................................ CTATGCCCTCTCCATGGTTTTGTTCGGGATCGA 8244 32 100.0 33 ................................ TAAGCAAATAAAGCATCATGATAACGAATATAG 8179 32 100.0 35 ................................ TTCCATCTCGGAGCGTAAGTAAAGTCTGGTTTTAC 8112 32 100.0 34 ................................ AAGAAAGATTTGCGTTGCTATACTATCAATTGGC 8046 32 100.0 34 ................................ GCATATTGGAGGTCATTGCGGTTAAGGACGAGAA 7980 32 100.0 34 ................................ GGAATGTGCATTAAAAAAATCTAATACCAATCCA 7914 32 100.0 34 ................................ TTCGGTGCGGAAAGGGAATGGGGTTTGTTTAACC 7848 32 100.0 36 ................................ AGCAATGTGATTTACTACAGTATGGTGTACAAATTG 7780 32 100.0 34 ................................ TCGGAGATGCTAACCACAGAATACTATGGAGGGA 7714 32 100.0 34 ................................ ATCGGTGATGTATTTATTGTGCTTCCCGACCGCG 7648 32 100.0 40 ................................ TTGCAATCGAAGCGTTAGCCCACATGACGGCTTGCTCCAG 7576 32 100.0 35 ................................ ATTATGCACGCTTGCACCTGGAATTGTTTCAAAAA 7509 32 100.0 34 ................................ CAATGCAGTAAAAAAACATTTTGTCAATCACCCA 7443 32 100.0 34 ................................ AAGTATTCTATACTGTATCAGTGAGGTGAGATTG 7377 32 100.0 34 ................................ AAGTATTCTATACTGTATCAGTGAGGTGAGATTG 7311 32 100.0 35 ................................ TACATAAAGGGGAAACCGACTCCGAGTATGGTTCC 7244 32 100.0 33 ................................ TCAAATACGAAGGCAGATGCGATATTGAATCAG 7179 32 100.0 38 ................................ CAATACATACTCACTCGGACGGTGGTGGTGATATGAGT 7109 32 100.0 36 ................................ CTTTATGACAGGAGGAAATTCGGAAGAGGTCAAATT 7041 32 100.0 35 ................................ ACATTTTCACCTACCTTTCGTATGTATTTACAAGG 6974 32 100.0 34 ................................ GTAGCATTAAAAGGAAATATGCAGGGAGGGGAAA 6908 32 100.0 33 ................................ ATATTACACGACAAGGCCTACCCGAGCGAACCG 6843 32 100.0 33 ................................ ATATTACACGACAAGGCCTACCCGAGCGAACCG 6778 32 100.0 34 ................................ TGCACCCCCGCCCCTCATGCTGCCTATGATCCGC 6712 32 100.0 34 ................................ TTTGTTACACTTTTGTTCTTGCTCCTTTATCCAC 6646 32 100.0 34 ................................ ATTTAACGACTGATCCACCGCAACGACATAAGCC 6580 32 100.0 34 ................................ GTCGCTACTGTCTGCGGCACCTTACCAAGCTGCC 6514 32 100.0 34 ................................ ATTGTATCCTTTGTTACATTTGTCGTTTGCATCT 6448 32 100.0 33 ................................ GATCCGATGCGGACGTATTCAATTTTTTGTACC 6383 32 100.0 37 ................................ TTATTCGTCTACACAGTCATTACGACGGCGGATAAGA 6314 32 100.0 35 ................................ AAATTTATTTTGAATTTGCTTCAAGTATTCTATAC 6247 32 100.0 37 ................................ TGGATGGATACCTAATAAGCTTGATTGGATGTCCAAT 6178 32 100.0 35 ................................ ATTTGGACTACCTCCTTTACCTACATTATACCATT 6111 32 100.0 35 ................................ TTGTCCTTAAACGTTGATGCCAACACCTTGAATGG 6044 32 100.0 33 ................................ ATTTACCTCGATCCGATCTTAAGAGCGCGGGTG 5979 32 100.0 35 ................................ CACTATTGATAAGCCTGTAATAATGTGAGGTGGAG 5912 32 100.0 35 ................................ TTAAAACGGTGGAGATGCTCGATATAGCAGATGAT 5845 32 100.0 34 ................................ GAGCAGGACGGGCGGTATTATAAGAGCGCGCAAT 5779 32 100.0 37 ................................ CTCGTTTGTCTAGCTGGAAAAAACCACTTGTTACCTA 5710 32 100.0 34 ................................ AACTGGCTCGATAATCAAGTCGACGGTTTTGGTC 5644 32 100.0 36 ................................ GTTGATTGGGCCGAGTCGATCGAAGAAATACCGCCT 5576 32 100.0 33 ................................ TTATTATATTGCGAACAGACGTTCCGTGCAATG 5511 32 100.0 33 ................................ ACTTATTAAGTGCATCGGCTCTCCACGATCCAA 5446 32 100.0 35 ................................ AAAACAAGAAGAGAAGATAAATCCTCTTATGGTAA 5379 32 100.0 36 ................................ CCTTTTTTATCTCGAACCATATCCCCTTCATAAATC 5311 32 100.0 38 ................................ ACTCGGCCCCGCCCCTCCTTTTTTTGAGTGTTTCCCTC 5241 32 100.0 35 ................................ TGTACAGACTCAATATGGGTACGCCTGCGACCGCA 5174 32 100.0 34 ................................ ATCTCCCGGCTTAATGGTGTGTACTGATCTTGGG 5108 32 100.0 35 ................................ GGCAATAAACGCTCGAGATGTAGCGATCGAAGCGT 5041 32 100.0 34 ................................ CAAACGAAATTCCTATCGATACTACAGAGATTGA 4975 32 100.0 36 ................................ AAATTTGGACTCCATCCCTGTTCCTGCTTGCGTATT 4907 32 100.0 36 ................................ CGGTTTTAATCAATGTATCGAGTACAGGTAGAGTTA 4839 32 100.0 33 ................................ TGTTTCAACTGTAGTTTTCCACAAAAAAAGAGC 4774 32 100.0 33 ................................ CCAACTCTCGAAGATGCGGTCCATTTCGTTTTG 4709 32 100.0 34 ................................ CCTTATCTTTATTTGCTCCTGACTCTTCAATCGG 4643 32 100.0 34 ................................ ACGTCCAATGCCGAAAATGGAAAGATCCTTCGCC 4577 32 100.0 33 ................................ AATTTTAATGGAGTGCAGATTCGGACAATTAAT 4512 32 100.0 35 ................................ CAAGTGGCACGCGTTGCCATCAATCCGGTAGCACC 4445 32 100.0 34 ................................ AGCACGCGTAAGCTGCTGGGGGGTGCTACCTGAT 4379 32 100.0 36 ................................ GATGTCTCATATGCTAAACAAGCTATGTGAGGACTT 4311 30 93.8 34 .........--..................... CCGTACATTGAAACAGCTTGCTCGCGAATTGGAC 4247 32 100.0 38 ................................ AGCCTGAACGTTAGTATAGATTACAACATCTGAATAGG 4177 32 96.9 34 ...........T.................... GCAGTACAGGTCGTAAGCGCGTTGTTCGTCATCC 4111 32 93.8 35 .........T...C.................. CATGAATACGAGGATATCAAAGAGGTGGATTATGA 4044 32 90.6 0 .........T...C.....T............ | ========== ====== ====== ====== ================================ ======================================== ================== 107 32 99.8 35 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : CCTGCGATCGTACAGGAATTTCCGTACCAAACCACCTCATCCACCATCGAAGCGAGAAAAAAGATATGTTATCGCAGGCTTTGCTGCAGCAACCGATCAAAACGAGTAGAAGGGATGCACAATTGCAGGCTTTCTAAGGTGTCCATCATGCCGCTTATCCTTTCGAACTGGCGCAGTGTTGTTTGATTCATTCCAAATGAAGTCCTTGCAATATGTCACTGTTTGTTCTAGTGCAAACATGCAAGCTATCCTTGATAGGATTGGAGCGAAAGACTATACTTTAGATATGTGGCAGGTTTTGGAATCCTTTTATAAGGCGAGAAAATGATTCGGTGCGAACCTCAAGCTCACATAAAATCCCCGGGAGATTCGCACCTCGCTTCCGGCCTGCATTTGTTGCATTTTAAGTTGATTTTTTATGGAAGAAAAAGGGGAATAAAAATTGATTCGCACTTTTGGGCCCCGCAGGCCTTGTCCGGCAAGGCTTGAAATAGGTCGGA # Right flank : ATGACATTGAAATCAATCAGACCGCTCAAGTGATTCATGCTAATGACGGCAATGCTTATTATAAATTTACGCCGAATAAGAGCGGACTTCATCGATTATTTACGGAAAATAATCAAGCCGCGATTGTTCGATTGTTCGACGATCCCGGTTTACATCGCCAGATAGGTTCAGATGGGCAAACTATTGAGATTCACGGCGTCTACTTTAATAAAATGGAAGCCAATCTTCGCGTCAATCAAACGTATTATGTGCAAGTATTAAACAGTTCCAGTGCTGTTACATTTCTTACGGTAGAAGAAGCAAGGCAATCCAATCGCGAAACGGCAGAAGCAATCAGCTTTGACCAAGTCTATGATTTCGACCTAACCTCCGTATTCGATAATTTTTACTACAAATTCAAGGTAGCAGAATCAACTCAGATGAGCGTCAATTTTACGGAAGGGTTGGTAACACTAGAGGATCAAGAAAAGAATATTGTCACAACCTTTGAGTCCGACCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA //