Array 1 446433-449955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008887.1 Thermococcus eurythermalis strain A501 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 446433 30 100.0 37 .............................. TCGAATACACCTGGACGACCTGAGAGTTCGGCTGTAC 446500 30 100.0 38 .............................. TGTCGTGGAACTGGGCGCCGAGCACTTCGCTAAGCGTC 446568 30 100.0 38 .............................. CCAAGTCAGTAATATCTACAAACGCCACGCCCCGTCAC 446636 30 100.0 37 .............................. GTCTTATTAGCAATCTCATAGTAATCCCCCATACTAC 446703 30 100.0 36 .............................. TAGAGAACTCAAGGAAAAAGCGGAGAAGAAAGGGGA 446769 30 100.0 38 .............................. TTTTAAGGGATATAGCCTTAGTAGGTTCGAGGTGGTGA 446837 30 100.0 38 .............................. GAGGAGAGTATGCGGTTCCCCAATCATCGGAAGGGCCG 446905 30 100.0 38 .............................. GTATAAGCGAATTTAACTGCTTCTTCTGTTGGGTCATC 446973 30 100.0 36 .............................. CGGAAGATACCGCGCCCTGCCACCGTGTCGCCGTTC 447039 30 100.0 36 .............................. TCGTCACCCGCCAGAAGAGTTCGTACCAAAAGTAAT 447105 30 100.0 36 .............................. CGGCCTCCGCAGCGGAAGCCTCAGCCCGATTTCGAG 447171 30 100.0 37 .............................. TCGCAGAGGTTGGCGGCATCCCGGTCGGCTCGGACAT 447238 30 100.0 37 .............................. CGTGTACGCGTCGAGCTGGAAGAAGAGTAATTTCCGA 447305 30 100.0 36 .............................. AAGAAAGTAATGTGGTTAGGGTCAGCGTCTGAAAGC 447371 30 100.0 36 .............................. AGGATTACGGAAGGAGGGGTGGATGAGATAATAGAG 447437 30 100.0 37 .............................. CTGAAAAACTGGAAAAAGCGGGTCTGGTGGTGGGCGG 447504 30 100.0 36 .............................. AAGTCCTCCGTGCCCTTGCTACGCACGACCAAGTGG 447570 30 100.0 37 .............................. AAACGTTACTGAGCTGATTGAGATTAACAAACTCATT 447637 30 100.0 39 .............................. ATGTGAACAACCCGAAGAAGCACCCGCCGGAGCAGGTGA 447706 30 100.0 39 .............................. CTGCTCGTAGTTGTCGAAGGAGTAGTAGCCGAGGCTCCA 447775 30 100.0 37 .............................. CTCTTACCATTTACGGCGACGACCTTGCGAGGATAAA 447842 30 100.0 37 .............................. GATTTCGTCCATCTGGCCCTTAATCTTGTGCTCATAG 447909 30 100.0 36 .............................. TCGGTAGAATCTTTTCTGCCGGAACACCCTCAAAGA 447975 30 100.0 35 .............................. CATAAACCCGAACTCTGCCACTAACCAGGTTACTA 448040 30 100.0 38 .............................. ACGAGTTCCTTCGCGGTGGGGAGTACACGATGGAGGAG 448108 30 100.0 37 .............................. GATGGGCTGGGTCGCCGACAAGATGGGCCACCCCGAG 448175 30 100.0 38 .............................. CTCGAACTCCTCCTGAAAGAGCCGGTCGTACTCCTCAA 448243 30 100.0 37 .............................. ATGATAAGTTTCCCATTGAAAATAATAGGACATTCAT 448310 30 100.0 36 .............................. CAAGCTCGCCGAGCTCTTCCTTTAATGAAACGTATC 448376 30 100.0 37 .............................. TGACTGCTGACCCTTCTTATTTCGTTCTTTCGGAAAG 448443 30 100.0 37 .............................. CGACTGACAGCGACTACACTCACCGCGATAACTCACT 448510 30 100.0 36 .............................. GCTAATTATGGTAAAGATAGCCTCAGTTGCCGTAGC 448576 30 100.0 38 .............................. AGAGCACCGCCGAAGGTGGTAGCCATGCCGACAGTTAG 448644 30 100.0 36 .............................. TGAAGGGCTCAAGGGCCGTCGTGGTCGCCAAAAGGG 448710 30 100.0 39 .............................. CCGTTGTTGTTGCTACAGTTGTTCCTCCTCCTGCTGCAG 448779 30 100.0 36 .............................. AATATCAGGTGACGATGTCCCCCAGCATAAGCGAAC 448845 30 100.0 37 .............................. AAAGGAAAATGTAGCCGAGGCGCTTGAGGGTGCTGTC 448912 30 100.0 37 .............................. CATCGTCCGCGAGATGGAAGAAGGGGGTCGCGAGGAG 448979 30 100.0 36 .............................. AGTGGAGGGGCTACGCAGTCTTCGGAGCACTGTTCC 449045 30 100.0 40 .............................. GTACAAAGCACTGGGAAGACTTGTACGCAGACTTTGCCAG 449115 30 100.0 37 .............................. CCGAGGGCCCTTCCGGGGAGAACCATAAGCGAGTACG 449182 30 100.0 37 .............................. TGGTCCTGTGCTATTATCCTTAGTGCCTGCGAGAATG 449249 30 100.0 36 .............................. TGAGCCGTACAGCGCCCGGCAGTGGCTGGTCAAGCT 449315 30 100.0 38 .............................. GTATCCTCAAGGAGTATAACCTTTACCTTCTACGACAC 449383 30 100.0 39 .............................. CTCGACGAAGGCCCAGGGCACGTAGTAGCCCTTGCCCCA 449452 30 100.0 39 .............................. TGATGTGGACGGTCTTGTCGCTGTTGGGGGGGTTCTCTA 449521 30 100.0 36 .............................. ACACATCTGGTTTGAGATAGGGAATTAGGTCGTCAT 449587 30 100.0 39 .............................. AGCCGAGAACTCCGCGAGGAACGGCGCCGCAGAAACGAT 449656 30 100.0 39 .............................. TGAAAATGTTCTTTATGTTGTCCACAATCCCCATCTCAT 449725 30 100.0 38 .............................. ACTATTGAGGGGGTGGGGTAATGGCGACCTGGCAGAAG 449793 30 96.7 36 ...............C.............. TTGAACTCTGGGGGAACGGTGAGGCTCTCGACAAAC 449859 30 96.7 37 .................A............ AGTCGCGAACATCGAGATGGAAGACGAGAAAATCAAG 449926 30 86.7 0 .................A.........GGT | ========== ====== ====== ====== ============================== ======================================== ================== 53 30 99.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TGGAGAACGGAAGGCTCTGAGCTTTTTCTCTCTTTGTATTTTGTATCACGTTCATAAGTCCTATTTTCCAGAACTCTTGTTTTTGGTCGTGAGTTTTGCCGTATAGAGTTCTGTTTGGGTTTTGTAAATCGGTTTTTGCTCTTTTGGAATTGTGACATTATGTTGTGGTTTGAGCAGGTATTTGTAACGAATTTTTTGTGGAAATTTGAATGGGGGAAGCTTACCCCTCCGTTGGCCTTAAACCCTGTTGAAAATGCTGTTTTTCATTATTTTGGGAACTTTAAGGGAAATTGCTCGAAATACCTTCCCTTTGGGGCCCTGGAAATCTCGTGTACTTTGATGTTCATTGTATTTTTTAAGGGGTTTATTTGGTTGCTGAAGACGGCAAAGGGCTCCAATCAGGGGCCTTTGGGGGGCTTTTTACCGCCGTTTTCCAGAAAAGCTTAAATATTTGGGTGTCTATAGCCCTCTGTTGGGCGAATGGGCGAATTTTCCGCCCT # Right flank : TGTGACTGCTTCATTGGCCCGAACCTGTAGGCACAGGTTCTAATAAATGGAGAACGGGAAAAGCAGAACAAAGACGGCTCTTCTACGACTTCTTTACAAGGGTGTAATAAGCCATGGCCAAGAAGACGATGTACATTCCCACTGCCAGTATCACCGCTGTGATGTTTGGCTCGGTGCTTGTTTGGTCGTTCTTGCAACGACTCCATACAGCTGTGTGTCTATTAGCATATCACACCACCAGTATGAGCATTGTGTTTGAAAATTAAAACTATTCGCGTGGTGTAGTACTATATGCAACCCTTTGTCAATTTCGATACTGTATTGTTGAGAGGGCCCAATTGGACAAGTTTTGACTCTGGAGGAGTTGAAATGCACTCTGATGGTAGATGCTGATGGGGTTTCGGTCCTCTTTCTTACGACTGGATAAACGAAAAACATTTAATTCAAAAATCAAAAAGTATAAACATGGGTCTCAGGAGAAAGATCAGATCTTTTGTTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 1220049-1224832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008887.1 Thermococcus eurythermalis strain A501 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1220049 30 100.0 37 .............................. GACAACGAGGACATCTACGCCATGCTCTCCTTCCACG 1220116 30 100.0 38 .............................. AGTATGCGCTCTGCGAGGGCCGGCGCGTGAAGCTCAGC 1220184 30 100.0 37 .............................. CCATCATGTTCTTCACTATGCTATATGTTTAAACACA 1220251 30 100.0 37 .............................. ACAACAACAGTTGGTTCTTGCTCGGCATACTTGCGAA 1220318 30 100.0 36 .............................. ATAGACAGACCTGTCGGGCCTTGCTGACATTACTAC 1220384 30 100.0 37 .............................. CGAGATAAGGATGCTGGGTCCGACGACGGTCAAGCTC 1220451 30 100.0 38 .............................. CGATTCCACTACTCATAGGTTTCACCTCCTTGAACCTC 1220519 30 100.0 37 .............................. GGAAATTGTCCTGAGAAGGACGTTCAGGCTACCGGAG 1220586 30 100.0 37 .............................. AACTATGGGACGGGAAAGGCTTTAGGGACTTAGCCTT 1220653 30 100.0 36 .............................. TGTGTCTATTAATCTCATTGGAACTTTGGCGGTGGT 1220719 30 100.0 37 .............................. CTATCGTTTCTTCGTCTGGCAAAACGGCGACCTTGGG 1220786 30 100.0 35 .............................. GGATAAGGCCGATAAGAATACCCCAGGCGGCCCAC 1220851 30 100.0 37 .............................. TGTTCTGGTCGCGTTGTCGGAGCGCGTCGCGGTTGTG 1220918 30 100.0 36 .............................. AGGTCGAGCTCCTCCGGCGCCAGCTCGGGGGGTGAC 1220984 30 100.0 37 .............................. TGTTCTTTTGAAGGCCAGGACTAGCAGGAGGTTCTAC 1221051 30 100.0 38 .............................. AGTTCTGGAGAGACATCAAGATAAGAAGAAAGGTCAAG 1221119 30 100.0 37 .............................. GCAAATCAACAAAATCAACGCCATCTTTTGCGTTCAT 1221186 30 100.0 37 .............................. GAGGAGATACTGTGCAAATTCCTCCAGCTCGGGAGGG 1221253 30 100.0 37 .............................. TGAGCGGGCGAAGAACAGAGCACTGACGAGAGAAGTA 1221320 30 100.0 36 .............................. CGCGCTTCCTGAGCTTGACCTTGTACGCTTTAGGCG 1221386 30 100.0 37 .............................. AGGGGGTGGTAAACGTGCGAAGAAGAGGTAGGGGCTT 1221453 30 100.0 36 .............................. GATGAAAAAAAAGATATTATAGCTGTCAGAGTGTGC 1221519 30 100.0 38 .............................. TGCAAATTGGAGGTATCTTGGATGGTACTATCATCCAG 1221587 30 100.0 36 .............................. ACAGACGGAACAATTGTGTCTGGCCAAAACCCTATG 1221653 30 100.0 38 .............................. GAGGCACCCTGTCATTACTCATCTTCGGATCCAGGCCA 1221721 30 100.0 36 .............................. TAGTCTAAGGTTCCTACTAAGTTGTCGTCTATGTAG 1221787 30 100.0 36 .............................. AATGTGGGGAGAGGGTGAAATCAGGTACACCGTTAC 1221853 30 100.0 37 .............................. GGGCTATGTGGTGCAGGTCTCTGGTGGGATTAAACAC 1221920 30 100.0 36 .............................. GCTGTGAATTCTGAAACAGTTACTGATTTATCCCCA 1221986 30 100.0 37 .............................. TTATCAATCAGCACAACATCAGAGGCCCTGGTAACAT 1222053 30 100.0 37 .............................. GGGCAGCCCCAGCAGCCCCAATAAGCAACAGGTTGTT 1222120 30 100.0 36 .............................. CTCCAAATACTTGTTCACCAATATGTTTCTCCCCAT 1222186 30 100.0 38 .............................. CGAAAAAATCAATGACGAACTGCACGGGGTCGGCCCGC 1222254 30 100.0 37 .............................. AGTAATAATCTCTGAGGTTTGTTTCCGACGTGCTCAG 1222321 30 100.0 36 .............................. CTCGTGTATTGGCTCCATCTTCGCCATCCAGACCTC 1222387 30 100.0 36 .............................. AAAGAAGATGGCGAAACTCTACCGGCAATACTACGA 1222453 30 100.0 37 .............................. ACGCTGAGCGGGAGCTGATACAGCAACTCATAGAGGG 1222520 30 100.0 36 .............................. TAAATCGTGCCGTCGTTCCCGTTGCCGCTCTTGTCC 1222586 30 100.0 41 .............................. CAACAGGCGCCGTTTACCTCTGATATCCTCACCCTCGACGT 1222657 30 100.0 37 .............................. CCGTGTGTTCTTCACTATATATTATGCTCTTATCCTT 1222724 30 100.0 37 .............................. GATTAAGCGCCTCGATATCAGACCGACGACGATGCGG 1222791 30 100.0 37 .............................. ACAATAATTGATTGTGAACCTTAATTAAAATACTAAA 1222858 30 100.0 36 .............................. GAACGTACTCAACAATTGAATCCTCGTAGTCAGAAA 1222924 30 100.0 36 .............................. AAAGAAGGACGCCAAGAAGTGGGACGAGTTCGTCAC 1222990 30 100.0 37 .............................. AGTGGTTCGTCCGCCACACTTCATACGCCCGGAGCAC 1223057 30 100.0 36 .............................. TGCGATGTCTTCAGTCAGGAATTCCTTATTAGTAAT 1223123 30 100.0 37 .............................. GAACCTTCCTAGCCGCCCACCTCGTCCTGGCTTCTTC 1223190 30 100.0 37 .............................. GAACGTGACTGCCGCATCCGCAAAGCTCCTGTCAAGG 1223257 30 100.0 37 .............................. TTGGGAAAACAAGAATAAGAATGGACAAGCTAACTGG 1223324 30 100.0 37 .............................. ACACGGATAACGACGTTCTTCATCTTCCTTCACCCCG 1223391 30 100.0 37 .............................. TGCAGAACAAGATAGACGACGCAAAGCAGCTCGAGAC 1223458 30 100.0 38 .............................. AAAGTAGCAAATACAATACTTATTTTTAAACATTAAGT 1223526 30 100.0 38 .............................. TTTGTTGTTAGCGTTGTGTTGCCGACCTTCAGAGACTT 1223594 30 100.0 38 .............................. TCAAAGAGATTGATAAGACGCTTAGCGAAGTGCTCGGT 1223662 30 100.0 38 .............................. CCGGAGGTGGTGTTGAGATGGCGAAGATAAGAGCCCAG 1223730 30 100.0 37 .............................. ACGAAGGTCTGGAGAATGAACCTCTGCTGTTCGGGGT 1223797 30 100.0 37 .............................. CGGTGGGGGCTGGGCCTAAACGTTCTCCAGCACTTTT 1223864 30 100.0 38 .............................. TGGCATTCCAGATGAGTTCGAGTGAGTTCCCATTTACT 1223932 30 100.0 37 .............................. AACTGGAAATACGTCCTTGCGGCTTTGATGAGAGATA 1223999 30 100.0 37 .............................. CGACTGTGGCGACGACAACAGCCGCAGGAGGGTCTAC 1224066 30 100.0 37 .............................. AATTGTTTGACACTTGAAGTTTTTTAAGTAATAGAAA 1224133 30 100.0 36 .............................. GCTTCGGGCCGTCTCTGATCGCGTAGTCGTTGCTGA 1224199 30 100.0 36 .............................. AAAGTCTGCGAATACGCTCCGATATAAGCTGAGTTA 1224265 30 100.0 36 .............................. TTGGATAGATGGTCAGGGCAGATTTTGTATAAGACG 1224331 30 100.0 38 .............................. CTGAGGCCGATAGAAGAGAGCACGCCCTCCGCAAGCCG 1224399 30 100.0 37 .............................. GAGAAAAATAGAGATAGAAGAATAACCAAAGGGGTAG 1224466 30 100.0 36 .............................. CGGAGATTGTCATACACATACGGCAACGTCGGCGCA 1224532 30 100.0 38 .............................. CCGAGATGGACGTAAACCAGCTTCACCCGCGGTGCCTG 1224600 30 100.0 37 .............................. GCGTGGTGAGATACTGCAACGCGGTCATAATCTGAGA 1224667 30 100.0 38 .............................. CCTTCTCCGGCTTGAGTGGGCCGAGCGGGTCGCGGACT 1224735 30 100.0 38 .............................. GATTGAGGTTTTCCAGAACCTCGGCGAATTCGCTCGGT 1224803 30 83.3 0 ..............TG.A......CA.... | ========== ====== ====== ====== ============================== ========================================= ================== 72 30 99.8 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTTAGGAAGTCCTGAATTTAACCTTTTCTGGCCTATCACGCTAAAAGTGCCTCAATTTCCAAAAAGGGCTGTTTGAGAGGAGGAAAAGTAAAAATCTCTTCTCGAATGCGGCAGGAAATCAATTTTTGTTGTTTCAAAATTATTACTTATTGTTATATGCTCTCGCTTGAACTGTAACGAATTTTCTTTGGGAATTAAAACAGAGCTCGTCAATCCCCTGAATAACGCCATAGCCTGTGGAAAATGATGTTATTTTAGATTCGACCTTTTTAATCTTCGATTTTGGAGTTTAACAACATCACACGGGTTTGCATTTCTTAAACCGTTTCACCAGCATTACTGGGAAGAGTCCTTCCAACCACCATTTTGGAAATCTGGAGATTCACGACGACTCCGATTGGAGAATATCTGTGCATTCTTTCTTGAGGGGTTTCCAGAAAAGCTTAAATATATAAGAACGTACAACTCCCTGTTGGGCGAACAGACAGAAAATCCGCCCT # Right flank : GCTCCGTGCCCTTTGAGCTAAGTTCTAAAATCTGGGCAGAGAGAAAAGGGCAAAAGCCCTCAGAGAAGCATCCTCGCGTCGACGGCGACAGCGCCGTCTTCGTAGGCGAAGATCGGGTTGATGTCGAGCTCCTTAATCTCCGGAAGCTCGAGGGCGAGCTCGCCGACCTTGACTATGATGTCCGCTAAGGCGTCTATGTCTACCGGCTTCTCACCGCGGGCTCCTGCTAAAATCGGGTAGGCCTTGATCTCCTTGATCATGTCGAGGGCCTCGTCCTTGGTTATCGGGGCAACGCGGAAGCTGACGTCCTTGAGGATTTCAACGAAGATACCACCGAGACCGAACATGATGGCAGGGCCGAACTGCGGGTCGCGGATCATACCGACGATGACCTCCTTGCCGAGCGGGAGCATCTTGTAGATTATGACACCCCAGAGGTCGGCGTCCGGCTTGTAGTTCTTGGCGTTCTCCATGATGGTCCTGAAGGCCTGCCTGGCCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 1581454-1583630 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008887.1 Thermococcus eurythermalis strain A501 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1581454 30 100.0 35 .............................. GCAGGTCGCTGAACTCATAGAAGAAGTGTTGAGCG 1581519 30 100.0 38 .............................. TGAGAGCTTCTAAGAGGTCGTCGAGCTCGTTGAGGTCG 1581587 30 100.0 40 .............................. CTGTCCAAAGTGCCCCTTGCAAAAATTCTCCATTTTCGAA 1581657 30 100.0 38 .............................. GGAGGAACGTGAGAAAATCTTCGGGAATGTCGGCGATT 1581725 30 100.0 38 .............................. ACCTGGTAAGCGAGCTGTGCTCTCTTGAAGCCGACGTA 1581793 30 100.0 39 .............................. AGGACGGAGCGACGGTCGGAGGCGATAGCCTTGACGGGA 1581862 30 100.0 37 .............................. AGCTCCCGGTTGAAAAAGCGGACGCGGACGAAAGCGC 1581929 30 100.0 38 .............................. GGCTCCGACGAGGGCCTCAACGTACTCCTCCTTGTCCT 1581997 30 100.0 37 .............................. AAATCTCATTAGCATCAATAACCAGCGGGTAAACTTC 1582064 30 100.0 37 .............................. TTTAGTATTCGGTTGCCGGTATATATATCCTTCGCAA 1582131 30 100.0 38 .............................. GTGGGCTTCCACACGCCCTCCTCAAGGAGGACAATCCG 1582199 30 100.0 38 .............................. ATGCCCAGTTCGTTAAAGCACCCCAGACCGTCGAATAG 1582267 30 100.0 33 .............................. TAACTCCCCACATTTCCAGCGACATGGCTCGCG 1582330 30 100.0 37 .............................. AGCGCTAGGCCGGCCAGCCCGCCGAAGAACATCAGCA 1582397 30 100.0 32 .............................. GGCTCCTCGTGAGCAGTTGGCCGTCAACGAGG 1582459 30 100.0 38 .............................. GTCTTTTCTGAACAGATCATACATCTCATACCTCACAA 1582527 30 100.0 40 .............................. CAGGTAGAAGGCTCGGTTTCGCTGAGGGTTTACGCTGGAA 1582597 30 100.0 36 .............................. TTGGTTTACGAGAAGACTTATTCGAACTTTGAGACG 1582663 30 100.0 37 .............................. AGCGTTGATACTGTTATGAGGGCACACCAGCAAGTAT 1582730 30 100.0 37 .............................. AGTTTCCCGTCCTGCTGGTTGACTACAACACGGTGGT 1582797 30 100.0 38 .............................. TGCTCCGAGACAAGGAAGGCCTTGACCCACAGATGCGA 1582865 30 100.0 38 .............................. TTGGTTGACAGAGTGTTACATGCGCCCCGCGGGAAACT 1582933 30 100.0 37 .............................. ATAAGTGACCAACAAAGAGTAATACTAACAAAACTAA 1583000 30 100.0 37 .............................. GTAGATCCTGAAACCTGGACGGTCTCAGTTTTCAGCA 1583067 30 100.0 38 .............................. CGACGTAGTCAGCGCCAATTCTCCTCGCCAGGCGCCAG 1583135 30 100.0 39 .............................. TGAGGTTGACGAGGCGAACGGGCAGGTTTACTTTGACAA 1583204 30 100.0 33 .............................. TTACCTGGGTCGGTCTGCTGGCGTAGACCTTGA 1583267 30 100.0 37 .............................. TACTCTCCAATTCCCATTTACTGCACCAACCCACTAC 1583334 30 100.0 37 .............................. AAAAGCTTGGGAGAAAATGGATTGGAATAGAGATTAA 1583401 30 100.0 38 .............................. TCCTTAAGCTCAACCTTTGTGAAAGGTGGAGCGCAAAG 1583469 30 100.0 36 .............................. TTCTGCGAAATCGGCGGGAACTCTATCCTTGAAGCG 1583535 30 100.0 36 .............................. CCGGCGGTAAAAGGCCCTTGTGTCGTCGTAGGTTGA 1583601 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 33 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TATGGAAGCTCAGGGAGCTAGGTTTTGACGTTCTATCACGATGAGCTCCCTTTGATTTGAATTTTCTGCTTTATTGGACCATGTTTTATCCGTTTCGACGACATAAGGCTCCTGGAAATCGATTTTCGTAGGTCTAAGAACATCACAAATTGTCACAACTTAGCTTGGATTTTGTAACGAAAATTCTCTGGAATGCTGAACGGGGCTGTTCTGGTAGGGCTTTAGTCTAAAACCCTGCTTAAATTGAATCTTTTTGAGTTTCGAGCAACTAAACGGCTAAAATTTTGAATTGGGGTGTTATCTTTTCTCCGGAAATCACTGAGAGGTTTTCACCCATGTAGGAAAAGAAACGACAAGATGGCCCCAGCGGTGCACAGGGGAACTTCTCAAGGCCCGAATTCAGAGTGCCTCCCCTCTGCTTTTGCAGGGGTCTCCAGAAAAGCTTAAATATCTGAGTGTTTATAGGTCTCTGCTGGACGAATGGGCGGATTTTCCGCCCT # Right flank : GGAGGAAAACCCTTATCAGCAGGGGCGGCCTTTCCCCTCTGGTGGTCGGAATGAAAGCTAGGGTGGTAGAACGCTTCAAGTTTGAATCAGCGCACGCGGTTGTTATTAATGGAGAACCCGAAGAAATTCACGGGCACACATTCATACTTGAGGTCGCAGTCGAGGGCCCCATGAGGAACGGCTACGTCATTGACTTCCTCGAACTCAGGCGCATCGTGGGTGAAATAGTCGGTAAGCTTGACCACCGGAACCTGAACACCATCTTTGAAAACCCCACGACCGAGAACGTCGCCCTGTGGATAGCGGAGGAGGTTAAAAAGAGGCTCCCCCAAGGTGTCGAGCTCAGAAGGCTGGTTCTCTGGGAAGGGGACGAAAACGGGGTCGAGCTGGAGTTTTAAGGCTTCTCTGCCTTTACCTCCTTGACGCTCTCAACGAGCGCCACCCCATTGGTGCCCTTCTCAAACGAGATGCCGTCGGGCAGGGACAGCCTTACGGGGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 4 1720540-1721978 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008887.1 Thermococcus eurythermalis strain A501 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1720540 30 100.0 38 .............................. CTTTTCAGGAGCACGCCCCACACGCTGAGGAGCATTGC 1720608 30 100.0 37 .............................. TGGAAGCCTCGCGAAGGCTCTCGAAGACACGTACCAG 1720675 30 100.0 37 .............................. TCAGCGTGGTGAACGGCAGGTCGAGGAGCCTCGCCTC 1720742 30 100.0 38 .............................. AGGTTATGCTTTTGTTGTCAATTGTTGACGAGTTTAAG 1720810 30 100.0 37 .............................. GGGCTTCGGCGACGACGTGGGCTTTTTGTCGAGGGCT 1720877 30 100.0 38 .............................. AACTTTTGTTTAAGGTCCAGGTCGTGTATAAGCTCCTC 1720945 30 100.0 37 .............................. TCATGTGCAATCATATACGTAATAGATAAATCTACCA 1721012 30 100.0 36 .............................. AATTGTTCGTGGCGTCGTAGGCCTGCACCCTTGGGA 1721078 30 100.0 36 .............................. GTGGACATCTTTATGCTCGCGGCCCAGCACGACGAG 1721144 30 100.0 39 .............................. TGAACGGTGGGCCTGTCGTGGCGGGCGAAGTCCACGTAG 1721213 30 100.0 37 .............................. AGCGGTATCGCCTGCGTCATCACAATGTGCTTACGTG 1721280 30 100.0 37 .............................. TTCTGAGCTGGAAATACGGTGCTCCACGTAGCTAACT 1721347 30 100.0 38 .............................. CCTAAACGGGTTGTTGTCCTTCGCATACGCCTCGTCGA 1721415 30 100.0 36 .............................. GTACTCACCCCATAAAATGAGGCAGAGGGCGGCGAG 1721481 30 100.0 37 .............................. CGCGTAGTTGTCACCTTTGTGGTTGTCGTGGTTGCCT 1721548 30 100.0 38 .............................. CTTACCTCCGCCGTTATACGCACAGCCCGTCCGCTCTT 1721616 30 100.0 36 .............................. CCTTCATTCGATTACCTCCTGTGCCTCCTTTTTCAG 1721682 30 100.0 37 .............................. TTTGTAGTGAAACTTTACCATACTTCTTGATTACCAA 1721749 30 100.0 37 .............................. CAGCAAAAAATTTCAAAACCCGGAATAGGACATACCC 1721816 30 100.0 37 .............................. TAGTGTTTAATGTTTTCAAGAATTTCTTTTGCGAGTT 1721883 30 100.0 36 .............................. TTCAAGAGATTCTCAGCAACGCCGAACCGCCGAGGT 1721949 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.8 37 GTTGCAATAAGACTCGAAGAGAATTGAAAG # Left flank : TGAGGACAAAATATGCAAGGTTTGATATAAAATCAACCAGCACTCTTTCCAAGATATCACGATGAGAAAAGGCCGAGACTCGAAAGGCCCCTTCTGAATGGAAAATTCGGAGAGAAATGATGGAAGAGGCTGTTGGAAATCGAATTCAATGAATTTGAAAATGTGACATAATGTTCCAGATTCACCGATTAAATGTCACGAAATTTTTTCGGAAAGTGGAAACACCACTGGAGAAAACGACTTTCGGGAAGAACCCAATTGAAACTTGACCATTCCTTTAAACATGTGCAGAGAAGAGGCTAAGTAAGAATTAAAGGGCCCTTAGGTGTTTGGAAGTCGCGGGTAGTTTCTCCAACGGGCCCTCAAAACTGGTTATCACCAATCCAAGAGCTACCGTGAGGCCGAGCAGAGGTCGCGATGATGAGGGGGATTTCCAGAAAGGTTTAAATATTGGGACGTTCTTCTTTCTCCATTAGGCTAAAGGGCGAATTTCACGCTCT # Right flank : TAAGTTTGAATTCCCCGCTTGAGGTATCAAGTTAAACGCTACAATAAGACCAAAGATTTCTCAGAACAAAAATGGGACATTCAAGGAAAAAGAAACCTCAAACCTTAATCCTCTTCCAGACCGTTCCCTGCGGTGTGTCCTCCAGCTGGATTCCGAGCTTTCTTAGCTCCTCCCTGATTTTGTCGGCTAAATCGAACTTCCTCTCCTTCCTGAGCTGGGCGCGGACTTCAACGAGCAGGTTTATTAGTTCCTCCTCGTTTCCGGCCTTCTGCTCCTTAAAGTAGTCCTCGAACAGACCAAAGACCTCGCCGACGTCCTTGAAGAACTCCCAGGCCTTCCTAAGGATGCTCTCCTTGGGCCTCTCGACCTCGGTGAGGTAGCGATTTATTGCGTTGCTGACCTCGAAGACCGCCTTTAAAGCCTCGGCCGTGTTGAAGTCGTCGTCCATCGCCTCGTAGAACTTCCTCCTCGCGTCCCTTATGGCCTCGTAGGCCCTGAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //