Array 1 946361-944817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015107.1 Flavobacterium columnare strain C#2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 946360 36 97.2 82 ......A............................. CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT TAATA,T [946346,946357] 946236 36 91.7 30 C.G..C.............................. TCAAATGCCCATTTTTTCAAATTCAAATGA A [946229] 946169 36 100.0 29 .................................... TGTCAACATTCAATAAAATTGCATTTTGA 946104 36 100.0 30 .................................... AATTCTGTTAAACGAGTTAATCCATTTGAA 946038 36 100.0 30 .................................... AAAACCGCTTCCATAATTAGTCTCATTATC 945972 36 100.0 30 .................................... GTAAAAGCCACGCTATCAATAGGATTACGT 945906 36 100.0 30 .................................... AAACTTTTACTAAATTATTTTTTTTAACCT 945840 36 100.0 30 .................................... CCAAAGAAGAAATAAACGACCGCTTGTACC 945774 36 100.0 30 .................................... TTTAATGGATGGGTTTCTTAATAGATTAGC 945708 36 100.0 30 .................................... AAGGAGCGCCAAATAAAGAAGATGTCGGAA 945642 36 100.0 29 .................................... CATAATCAAAATTTTTTGATGCTGGTGCG 945577 36 100.0 30 .................................... AGTATGACCTGTTCCTATTTATTATTAAGA 945511 36 100.0 30 .................................... TCAAGTTATTTTTCTCTATATAAGAGGCAA 945445 36 100.0 30 .................................... TGAACATAAAGTAGCTTACAAAGGTAATGT 945379 36 100.0 30 .................................... TCGCTTATCGTTAATGTAATAAATGTAAAA 945313 36 100.0 30 .................................... TCCAGCGCAAAGCACATTACGGTAACGGTA 945247 36 100.0 30 .................................... CTCAGCTGTGGTTTTAGTCGGTTCGTTTTT 945181 36 100.0 30 .................................... GTAAACCATTTTTTGCGATACACTCGGCTC 945115 36 100.0 30 .................................... AAAAACAGAGGAGGGGTGGAAAATCATAAA 945049 36 100.0 29 .................................... CAATATTATAGATTTGAAAAGGCAAAAGT 944984 36 100.0 30 .................................... TATCATTAAATTTATAATGTCGGGTAGTTT 944918 36 100.0 30 .................................... ATCGCTTTTTAATTGATTGTATAAAGTATT 944852 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 23 36 99.5 32 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : GAAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAGCAAGCTAAAATAGATTTGTTGCGTATTTATGAATATAGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACATCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACAGTATCAAATCGCAAATAACCAAACTTCATACTGATTGATTTGATTAAAGATTAGAAACCGAGGGACGAGTTTCGGCGAAGTCAAAACACGAAATTACTTATTCCCTGAAACAATCGCACGAACTGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGTTGATGTTTTATCTTCTAATTATCAAATGGTTAAGTTTTGATATCGTTAAAAAAAATGCTTCTTTTTTGGGGTGCTATGCCAAAATTGAAGCATTTTTTTATTCCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGGAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAGCCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACATTGCTGCAAGGAACTAGCCGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 3130394-3131476 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015107.1 Flavobacterium columnare strain C#2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ================================================================================================================================================================== ================== 3130394 20 75.0 20 .T..T......C.AC..... CTTACCAACACTTAGGTTGG G [3130411] Deletion [3130434] 3130435 20 100.0 46 .................... GTATCTACAACTTTAAAGTCACCTCAAATGAGGTGGCTTTTGTTGG 3130501 20 100.0 46 .................... GTATCTACAACTTCGTGGTAGTTTCCTTCAAAAGTGATGATGTTGG 3130567 20 100.0 46 .................... GTATCTACAACACAGATATGGCACTTATAACCCCCAAAACTGTTGG 3130633 20 100.0 46 .................... GTATCTACAACTGTTATTGCGTCTTCGATAGAAGCAACAAGGTTGG 3130699 20 100.0 75 .................... AGGGACGAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCGTTTAAAACC 3130794 20 75.0 46 ...TT.AA..T......... GTATCTACAACGACATGATCAGACATGTCCACTGACTCCATGTTGG 3130860 20 100.0 45 .................... GTATCTACAACTTATTTGGCATAATTTCTAAATTTAAAAGGTTGG 3130925 20 100.0 75 .................... AGGGACGAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTGAAACC 3131020 20 75.0 162 ...TT.AT..T......... GTATCTACAACTACTTGGAAATTGTCTAGTGACATACATCTGTTGTGATAGCCCTTATTTTACTCACGCTGTTTCTATTGTTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTATCTACAACTAAATCAGCCAAATAATCCGTGAATCTATCGTTGG 3131202 20 100.0 75 .................... AGGGACGAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTGAAACC 3131297 20 75.0 44 ...TT.AT..T......... GTATCTACAACACCATCATCCCATTAACGAACGACTGACGGTTG 3131362 20 100.0 75 .................... AGGGACAAGCGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTGAAACC 3131457 20 75.0 0 ...TT.AA..T......... | ========== ====== ====== ====== ==================== ================================================================================================================================================================== ================== 14 20 91.1 62 GAAAGCCCTTATTTTGAAGG # Left flank : TAAACTTTACATTACAAAAGCCTTATTAAAAAATGAATCTGAAATCATAAATTTAGAAAACATAGATATTGAAATTTTAATTAAATATTATGATTATAATACTGAAAAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGACTCGTTTTGTTCCAAAAAAAGAAGAAGAATACTTTGCTTGCTATTTCAACCGAGTTTTTGAAACCATAACAACAGAATTATGGGAAAACAAAAAAAAAGCTAAAGAAATAGTTTAAAAGCTATTGCTCTTTGATATTTTGAGAAGGATTTAAAAAAAGGAGTAGCTTTGGGGTATAAAGTTCAGAAAAAGTTCATTTTTTTGTATAAAAAATTGTA # Right flank : GAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAAATCAACATCCAGTTTGTCACTCCTACGTAGAAGGAGTCTCATAATCAATAGCATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTTAATTATTTAAAAAATAAATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTAAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCCATATACTGCCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAATCATGAAGGCTAAATACATCAATCCGTTTACCGACTTTGGATTTAAAAAAATATTTGGGGAAGAAGCCAGCAAAAATTTGCTTATAGACTTCCTTAATACACTATTGCCTGAACACGACCAAATTAAAGA # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:-0.75, 7:-1.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCTTATTTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //