Array 1 95905-94049 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYHX01000021.1 Klebsiella pneumoniae strain CVUAS 5452.2 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95904 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 95843 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 95782 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 95721 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 95660 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 95599 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 95538 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 95477 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 95416 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 95355 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95294 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 95233 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 95172 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 95111 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 95050 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94989 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94928 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94867 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 94806 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94745 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94684 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 94623 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 94562 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 94501 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 94440 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 94379 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94318 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 94257 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94196 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94135 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 94077 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCAACACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1967-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYHX01000027.1 Klebsiella pneumoniae strain CVUAS 5452.2 NODE_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1966 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 1907 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 1846 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 1785 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 1724 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 1663 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 1602 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 1541 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 1480 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 1419 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 1358 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 1297 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 1236 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 1175 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 1114 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 1053 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 992 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 931 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 870 29 100.0 32 ............................. GACCTGTCATGACGGAAATAGCGGTTATAAAC 809 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 748 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 687 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 626 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 565 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 504 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 443 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 382 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 321 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 260 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 199 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 138 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GGGTCAAAAGGTTCATTCGAGCATCGAGTTGCAGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //