Array 1 134-1840 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFP01000023.1 Flavobacterium psychrophilum isolate 57-SE559_S3_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 134 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 209 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 285 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 361 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 437 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 513 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 589 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 664 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 740 46 100.0 30 .............................................. TCCAGTAAGCTAGATGTCGTATATCAAAGT 816 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 892 46 100.0 30 .............................................. AAAAGAAATAGCAACAGCGACGATTGTTTC 968 46 97.8 27 ............................C................. TTACTTTAGACTTAAAGTAAGTCTATT 1041 46 100.0 27 .............................................. TAATAAGTTGCGGGTCGTTTATTCCGT 1114 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1190 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1265 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1341 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1416 46 100.0 30 .............................................. TAATCATCTGATGAAAATTGCTGTTCACTA 1492 46 100.0 29 .............................................. AAGCAAAATACAATAAAGATACATTTAGC 1567 46 100.0 30 .............................................. AATCAAAATAAGGTTTTAAAAGCGGCTTTG 1643 46 100.0 30 .............................................. AGGGCTTCGATTTTCTCGGGTTTCCATTTA 1719 46 100.0 30 .............................................. CGGTAACATCGATATAACTTGCGAGCTGGT 1795 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 23 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1396-937 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFP01000087.1 Flavobacterium psychrophilum isolate 57-SE559_S3_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1395 42 97.6 27 G......................................... ATTGAAAAAAGCATTCTCTCGAATAGT 1326 42 100.0 27 .......................................... ACCGGAAAAAGCACCTCGATTAATAGT 1257 42 97.6 27 .A........................................ ACTGAAAAAAGCACTATTTTCAATATC 1188 42 100.0 27 .......................................... GCGTGCAAAAGACCCATCTCCAATAGA 1119 42 95.2 27 .......................T....A............. GCCTGCAAAAGACCCTTTTCCGATAGT 1050 42 97.6 27 ................................G......... TCTTTCAAAAGCAGCATCTCCGATAGA 981 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [967] ========== ====== ====== ====== ========================================== =========================== ================== 7 42 95.6 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : ACTGAGTAACATTACCGAAGACATCTGCATTAATAGCTAAAGGCATTGTAATGTAACATTTTACTGTGGTTAAACGTTTACAATTATAAAAAGCAGCATTTTCAATAG # Right flank : AAGCGCAAAAGCATTCTTTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATATTTTATACCATTTGCTGTAAAATCTTGCGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTCTCATGTTTTTTGTTTTTAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //