Array 1 300106-301112 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLLS01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07059 WH-SGI-V-07059_contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 300106 29 100.0 32 ............................. CCGAGTCCACCGGACTGACGCTGCACACGAAG 300167 29 100.0 32 ............................. GCGATGAACCCCGCTCACATCTTGTTCGAGTG 300228 29 100.0 32 ............................. ATGGGCGTGCGCAGCGTGCGCGGGCTCGTCCT 300289 29 100.0 33 ............................. TTCATCTTTGCAAACCACCCGACTAGACCCCGA 300351 29 100.0 32 ............................. TGTGGCTCGCCGCGTTGAGCAACAACAGCGCA 300412 29 100.0 32 ............................. GCGGTAATCGGGGTCGTACTTCAGGCCCTCCC 300473 29 100.0 32 ............................. TACGGGAATGATGTCTGGTGCCACCTGCCAGA 300534 29 100.0 32 ............................. CAGTTCTCTGTCGTTCATTGCTTGGCTCCTTC 300595 29 100.0 32 ............................. CATGGCAAGGGCCGCTGATTTCCGATGAGGAA 300656 29 100.0 32 ............................. CCCTTCGCTGACCGTCATACCGTTGAGGCGCG 300717 29 100.0 32 ............................. GATTATGCCGTGGCTCGGGGCGTGGAAGCCGG 300778 29 100.0 33 ............................. ACAAGTTGCCGCTGTCGAAGGTGACGACGACCG 300840 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 300901 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 300962 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 301023 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 301084 28 79.3 0 A..........A..C..-.....A....T | C [301088] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 310287-311904 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLLS01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07059 WH-SGI-V-07059_contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 310287 29 100.0 32 ............................. CCCGGCTGGCCGCGACACGCGCTCGCGATGCC 310348 29 100.0 32 ............................. CGCTCGGCAATGCCGAGGTGTGGGAGGCAGTG 310409 29 100.0 33 ............................. CGGCTGGTGGCGGGACAACGACACGGGGTACAT 310471 29 100.0 32 ............................. GCTACCAGTACAGCCGTGGGATGTGGGTCGAC 310532 29 100.0 32 ............................. CCCTCATTAGCCACGCCGTCAGTAGTTGGCTG 310593 29 100.0 32 ............................. CGGGCAACGGTCCATACCAGTCTCATTCCCCA 310654 29 100.0 32 ............................. GGGTATGGAGCATGAGCGAAATCTGGAAATGC 310715 29 100.0 32 ............................. TTCATGGACGACCCAGGCGAAGGCCAGTACAT 310776 29 100.0 33 ............................. CCGGCCGCCGGCCGAGGTCCCTGTCCGACAAGC 310838 29 100.0 32 ............................. TCACCGATGGCCTCGGCGCCGAGGGTATCGAT 310899 29 100.0 32 ............................. GCACCCGCCGGGCGGGCACACAGGGAAGGAGG 310960 29 100.0 32 ............................. ACCTAGTGATCCTCGATTGCGGTCGATGGGAG 311021 29 100.0 32 ............................. GTTGCAGCATCGCCGGCGTGGCGGGCCTGAGC 311082 29 100.0 32 ............................. GTCAACCTCGTTCCGTACCGCGTCACGCTGAC 311143 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 311204 29 96.6 32 ...........A................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 311265 29 96.6 32 ...........A................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 311326 29 96.6 33 ...........A................. TGAAAGTCAGCGACCATGCCGGCCGGCCAATCC 311388 29 96.6 32 ...........A................. CCCTTCATGCCGGTGCCCTTCTGCCCGCAGGG 311449 29 96.6 32 ...........A................. GTGGTGCCGTGTGAGCCGGGCTTGGGGTCATG 311510 29 96.6 32 ...........A................. GTGATCCGCTGATAGTCGCCGTGCCCCAGGCC 311571 29 96.6 32 ...........A................. CTGCTGCGCGTAGGTTGGTGGCTCGCTATGTT 311632 29 93.1 32 ...........A.........T....... GGCCTATTCCGGCCAGTCATCTCAGCTTGAAC 311693 29 96.6 32 ...........A................. GTCACCGGGCAGAGCAACACTGCTGTTGGCAA 311754 29 96.6 32 ...........A................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 311815 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 311876 29 89.7 0 ........T..AC................ | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGACCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTTTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //