Array 1 163694-161896 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXIY01000004.1 Klebsiella pneumoniae strain ST-39:K0179 NODE_4_length_234098_cov_78.1472_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163693 29 100.0 32 ............................. CGATCGTCAATCTCTGGCAAGCGCTGAAAATT 163632 29 100.0 32 ............................. CCAAATGGGAGCATTTATCTTTTCGCCGGTCA 163571 29 100.0 32 ............................. AGACTAATTATATACACACTTAATCCTGAGTC 163510 29 100.0 32 ............................. CGCCGGTCAGTGGTCAGGCAGGAAAAAAGCAG 163449 29 100.0 32 ............................. TCATTTCTGACGCGAATGGCCGACATGCTGGG 163388 29 100.0 32 ............................. GAAATTAATCGCCCGTCTTCGCAGTCCTGCAA 163327 29 100.0 32 ............................. GCCAGTAGTTTTATTTCGAAATGCATTTCATT 163266 29 100.0 32 ............................. TAACCCACCGCAATTACGCGAATTAAACCCCA 163205 29 100.0 32 ............................. TAACGTCGCGGTGCGTCATCTCATCGGCAGTG 163144 29 100.0 32 ............................. TTGAGTTCGGGTCACGCCGCCGGGGTTGAGAG 163083 29 100.0 32 ............................. GCCTTTTCCGTTTTGCCGAAGAGTGTTGCGAA 163022 29 100.0 32 ............................. GATTATGCAAAACGACTTAGAGCCATAAGAAA 162961 29 100.0 32 ............................. TTTTCGGAATTACTGCGAGCGAGAGAGTGTCG 162900 29 100.0 32 ............................. GCTGCGTTGCCGTATTTACTCGCAGCGGCGGC 162839 29 100.0 32 ............................. TAACAGACGTATCATTTATGTTTGCTTACTCT 162778 29 100.0 31 ............................. GAAGTTAGCGATTATTTTTACTGGAGAAACA 162718 29 100.0 32 ............................. TGACAACCAGATCCGAAAATCCTGGAGCCGGG 162657 29 100.0 32 ............................. ATTACATCGTTTTCCGGGTTTCGTTTGAGCAA 162596 29 100.0 32 ............................. GAGGGGCCATGGAGCCGGTGTTGATTGCGTCC 162535 29 100.0 32 ............................. CGATTGTCGGTGGTTGTCTGCTGGTATCTGCT 162474 29 100.0 33 ............................. CGCCGGTCAGTGGTCAGGCAGGAAAAAAGCAGC 162412 29 100.0 32 ............................. GCGTTGTCGTCTAACCCGTCTAACCTGCGCGG 162351 29 100.0 32 ............................. CAGGGTCGCCGTATCCTTCGCCAGATGGCGGA 162290 29 100.0 32 ............................. TTACAAATCGCCTCGGGTGGTGCTCTGAAATA 162229 29 100.0 32 ............................. GAAATTCTGATTTTTTTACCGTGGATTTCCAC 162168 29 100.0 32 ............................. GCTATGGGAGTTAATGACATGGAACAGAAATT 162107 29 100.0 32 ............................. GCTCTTCTTCCTCCGCGAGTTCTGCATACGTG 162046 29 100.0 32 ............................. GATTCTAATTGACGTTGTAATAATCGTGTGTG 161985 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 161924 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCGGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11533-12721 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXIY01000059.1 Klebsiella pneumoniae strain ST-39:K0179 NODE_59_length_19007_cov_104.793_ID_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11533 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 11594 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 11655 29 89.7 32 ............TG............T.. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 11716 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 11777 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 11838 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 11899 29 89.7 32 .........T...T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 11960 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 12021 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 12081 29 93.1 32 ............TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 12142 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 12203 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [12208] 12265 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CCC [12270] 12329 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 12390 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 12451 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 12512 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 12572 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 12633 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 12694 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 94.5 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGTGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //