Array 1 204921-202818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063890.1 Klebsiella pneumoniae strain BS433-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 204920 28 100.0 33 ............................ TCAGTTACTGTTGCTGCTCCAGTAATTTCTCCA 204859 28 100.0 33 ............................ TCAGATATGCATGCAACGATCACATCGTACAGC 204798 28 100.0 34 ............................ TTATTATTGTTGACATCAATCCAGTAATCACCGG 204736 28 100.0 33 ............................ TGATGTTTTCCCACTCATCCTCTTCAAGGCCAC 204675 28 100.0 33 ............................ TGCCCGCTGCTACACCTGCGCCGCCGACCAGTT 204614 28 100.0 33 ............................ TACCTACGCAAAGGCTCTCAGGTGTATGTAGAA 204553 28 100.0 33 ............................ CATTGGTAAGACCGTGGCAATCAGCCGCATTGC 204492 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAACGCTGGTGGGCG 204431 28 100.0 33 ............................ TTTATCCTTAAAAGTTTTCGATGTTCTGTTGAG 204370 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 204309 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 204248 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 204187 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 204126 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 204065 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 204004 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 203943 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 203882 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 203821 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 203760 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 203699 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 203638 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 203577 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 203516 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 203455 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 203394 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 203333 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 203272 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 203211 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 203150 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 203089 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 203028 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 202967 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 202906 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 202845 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 35 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214679-213674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063890.1 Klebsiella pneumoniae strain BS433-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 214678 28 100.0 33 ............................ TCTATGATGAAGAGCGCCTGTTTGCTGAACTCA 214617 28 100.0 33 ............................ TCTAAGGATGGCTCGCACCAGTTTGGCGAGTAC 214556 28 100.0 33 ............................ TGCAACTATCAACGGGATGCTCCTTGATGTATG 214495 28 100.0 33 ............................ TATGCTGAAGCCCTGATGATAAGCGACCGCCTT 214434 28 100.0 33 ............................ TATCATCAAGGCCGAGACTCAGGCTGATGTATG 214373 28 100.0 33 ............................ CCTATCATGCGCTTGTTGCTGCATCTTCTGAGC 214312 28 100.0 33 ............................ TGAATTAGTGTATAAAGCAAGGCGTGACTTTAT 214251 28 100.0 33 ............................ TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 214190 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 214129 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 214068 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 214007 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 213946 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 213885 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 213824 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [213815] 213762 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 213701 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.3 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //