Array 1 4474753-4473445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008956.1 Herbaspirillum rubrisubalbicans Os34 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4474752 29 93.1 31 ...........................GC CCGGACAAAATGCGATTGTGCAGCGCATTCG 4474692 28 96.6 32 ........-.................... ACTGCGGCCGTGGGCGACTCGATGGACTACGC 4474632 29 100.0 33 ............................. CACCTGGCCGGCACTGGCTGCGCCGTGGTCGAA 4474570 29 100.0 32 ............................. GTCGATGGTGCGGGATTTCAGCACTACAGCCA 4474509 29 100.0 32 ............................. CCCACACGCGACGCTTGCGGCGCACTGGCCAG 4474448 28 96.6 32 .....-....................... TCGCTGCCGGTTTTTGTCATAGATACCGTGAT 4474388 29 100.0 32 ............................. CCCACACGCGATGCCTGCGGTGCGCTGGCCAG 4474327 29 100.0 32 ............................. TCGTCCAACGAAAACTTGCTCATGGCACGGAA 4474266 29 100.0 32 ............................. GTCGAGTGGCGCATCCTGCGCGCCTGCGACTA 4474205 29 100.0 32 ............................. CAGTGAGTGGGGTGAATGTAAAGTCTTCTTAT 4474144 29 100.0 32 ............................. CTGTATTTCGCTAATCTCTCCTCCCTTCCATC 4474083 29 100.0 32 ............................. GCATGGGCTGATGGTGCAGAGATTCAATATAA 4474022 29 100.0 32 ............................. TCGGTCAGCTTCTCTTCGTCATTGGCCAGCCA 4473961 29 100.0 32 ............................. TACCCGCCGACTTCTTTTGACGGAAGTAGGAC 4473900 29 100.0 32 ............................. GTGTATGACAGCTCCGCCTATACCATTGTTCA 4473839 29 100.0 32 ............................. ACCATCGTGGTTCCACCGCTGAATCAGAACAC 4473778 29 100.0 32 ............................. AGCGCATCGGCCAGTTGGCCAAGGCGTCGCAC 4473717 29 100.0 32 ............................. CAAGCAGGCGCAAACAGACTGGCAGTGGGATT 4473656 29 100.0 32 ............................. GACGCCCGTTTCGATGTCGCCCACGCGGCTGC 4473595 29 100.0 32 ............................. CGGTCGTTGCGATTCCGGCGTCTTTGCGCCAG 4473534 29 100.0 32 ............................. TGGGAGCGCCTTGTTCTCCCAGGATGCGCGCC 4473473 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 CTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : TTGCAGATCAGGATCTGCTCCCTCGCTTTTCGGATCTGTAGCTAACGTGTTCCGGCGCGATGATGCGCCGACTCCATCGGCGGACAGTCTTCGTGAAACTCCACTGCGAAATTGCCGATTGAAACGGTCTTCCGCCATGAAACACGCCTACGAAATCTCGATGTCGATGCACCACAAGGAAGACTTGTCAGTCAGAACCCTTGTCGAAGAACTGCGCCTTCTCACCAACGAGCTTGAGAAGCTATCTCCATCGCTCAATGAATGGCTCCTCACCGGTGAAACCCGTGATTCAGCACTGCTCTATGACGTTATTTTCCAGCAACACGGGCACGACATCAGCCCTTGCCGTTCTTGAAACTCGCCTCAAAGGAGCGATCGATCCAAGAATTATCTCGATCTGGAATGGTAAGGAAGGACATGCAGCCGCATCACTCAGAATCATGGCACGCCCGGCTCCGCACTTGAGCCTTGTGACGTTCGTCGGTCGTCCCCTGTCGTTC # Right flank : TCAACGTTTGCCGTCAGTATTCGATTGAACGTCCGCGACATCAACAGCGCTTCCACTGCGGTAGTAACGTCCAACGCGGTTGACCAGCGGTACCAACATCAACCAGAACGCATCGATGTCGGTCTCCGAGAGCAGTGGTTTCCTGCTGCTCGCGCCTGCCTTGCTGGCCGCACTCGGTCTGGTGAAGGGGTAACCATGCGCGGTGCTCGAATTAAAGACCATGCGTCATTCCGTCCAGCATCGGACCTGCTGCGCGAGCGCGCTGCATGGGTGCCGACGCCTCCTGGAAATGAAGCTGCCAAGGCAGAGCTAACTAAGTCTATTTCGCTGCTGCGTAATCGCAGGCGGCCCAATCTGCAAAACGGGGATTGCTTATTCCTGGGCGGCCATGGCCAAGCCGGTGCGTCGGCACATCTTGGCGCTAGCGGGCCTCTCGGCGGATCGCTGGGAATGCCCCATTCACTCCTTTACCGAAGCTGACTTCGTGATGCAGCCCCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4565628-4563712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008956.1 Herbaspirillum rubrisubalbicans Os34 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4565627 29 86.2 32 TG.C.T....................... TACCTGGCGGCGGCTGGTTGCGTGGCGTCGGC 4565566 29 100.0 32 ............................. GAGCATTGAGGATGTACGACCCGACGAACTCG 4565505 29 100.0 32 ............................. TTCGATGGTGCGGGATTTCAGCACTACAGCCA 4565444 29 100.0 32 ............................. CCCACACGCGACGCTTGCGGCGCACTGGCCAG 4565383 29 100.0 32 ............................. TCGCTGCCGGTTTTTGTCATAGATACCGTGAT 4565322 28 96.6 32 .................-........... CCCACACGCGATGCCTGCGGTGCGCTGGCCAG 4565262 28 96.6 32 .................-........... CCGCGCAAGGGCATCGTCAGCAGCTACAACCC 4565202 29 100.0 32 ............................. AATCCTGAAACCGGGAAGTCTGAGTATGCGCC 4565141 28 96.6 32 .................-........... TCGTCCAACGAAAACTTGCTCATGGCACGGAA 4565081 29 100.0 32 ............................. GTCGAGTGGCGCATCCTGCGCGCCTGCGACTA 4565020 28 96.6 32 .................-........... CAGTGAGTGGGGTGAATGTAAAGTCTTCTTAT 4564960 29 100.0 32 ............................. CTGTATTTCGCTAATCTCTCCTCCCTTCCATC 4564899 29 100.0 32 ............................. ACGCCGTAGCCATACGGTGTTCCAAATGCAGA 4564838 29 100.0 32 ............................. CGGCGCGAGCGTCTGGCCTTCATGGCGACCGC 4564777 29 100.0 32 ............................. CGCTATAGTAGCGTGGAGGTTAAGGCTGGCGT 4564716 29 100.0 32 ............................. GCATGGGCTGATGGTGCAGAGATTCAATATAA 4564655 29 100.0 32 ............................. TCGGTCAGCTTCTCTTCGTCATTGGCCAGCCA 4564594 29 100.0 32 ............................. TACCCGCCGACTTCTTTTGACGGAAGTAGGAC 4564533 29 100.0 32 ............................. TCTGAATAATAGCCCCGATAACTACCCAACTC 4564472 29 100.0 32 ............................. GTGTATGACAGCTCCGCCTATACCATTGTTCA 4564411 29 100.0 32 ............................. ACCATCGTGGTTCCACCGCTGAATCAGAACAC 4564350 29 100.0 32 ............................. CTTAATCAACCGCTTGCCAAGGGCGGCATTCT 4564289 29 100.0 32 ............................. ACCCGAAGCAGGCCGCAGCCATCGCATACAGC 4564228 29 100.0 32 ............................. ACGCCGACCGCCAGGCCAAGGAAGCCGAGACC 4564167 29 100.0 32 ............................. TATAGTTGACTCGGTGAAGCAAAACCCTTCAA 4564106 29 100.0 32 ............................. CATGCTGGAATGAAAGGTAGTTCACATCCATG 4564045 29 100.0 32 ............................. CAAAGACTTCATCACCTCAGCAGAAGCTTGCT 4563984 29 100.0 32 ............................. AATTTCCAGTCGTTCATTGATTCCTGCGACTA 4563923 29 100.0 32 ............................. CATACTTAGAGATGCGCAAGAAGATCAAAAAG 4563862 29 100.0 32 ............................. CGGTCGTTGCGATTCCGGCGTCTTTGCGCCAG 4563801 29 100.0 32 ............................. TGGGAGCGCCTTGTTCTCCCAGGATGCGCGCC 4563740 29 89.7 0 ..............G.......A.C.... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.8 32 CTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : ATGTTCCTGGACTTAAAGGAACTGAGTTGCGAAGGGGCTTACTTCGCGTGGCAGCCTTCAGCCGGCAGTGGAAGGCGGGTCAGTTGGAGTGGGTCAAATCATCGAGCAAATCAACAGGTATGTCACTGAAAGACTGGTGCCCCCCACGCTAGTCGGCCCGCAGTAATTCCGATAAGCAAAATAATATTTGATCGGAATATTTTGTTGTCGATTTTTCTACGCTCGAATAAGATGATGAGCTATCGCTTATTGTTCGGTGTAAAAGAATACGTGACTTTCGCTTGATTGACCGATACATGAAATTCATTAATCCAGGTCGGATGGTAAAGCGAACGTCATTGAACAGGATAACTTACTGTTGGGGGACAGTTGGCAGACGTCATGCATCCGCAGCGCTTCGATGCGCTCCATCCGGCTACCAGGAGTATCTGGGCTATTGGTCGGTGCTGGCTCCGACCTCTCTCCCTCTGGATCAATCCCTTTCTTTGAGCGCTGTGCAA # Right flank : CCTTGCGCAGCAACATCCGCTGCGCACATTGAAATTCTTTGATGTCGTCGCCCAGACGAAGCCGTAACGAGGCGAGGGCAAGAGCGACCGGTTGCTGATCGAGAGCCATGGTGAGGTTTCTTTAGGGTGAACGAATCCCGCGTGCGCCAAATGGCGCACGGCAGGCGTTAATCAAATTGGGTTCAGTGACCGGCTAGGCGGTCAGTAACAGGTCAGGCGGTGCCTGTTCCTTGGGGGGCGAGATAGGCACGGGGCGAGATGGGAAGACTCACCTCAGGATTGGGCATGGCCGACAGGGAAACGGTACGAGAAATCTCCAGCGTGGCAACGAAGGTATGGCCACAATCGACGTTCTGGCATCGATAGGTGATTTCCTTCATCAGCGTGGACATGGTCCGGCTTTTGGCTGCACGCACAGGGCTTTGGCAATGAGGACACGGCAGGCTGATTACACGCATGTTGTTTTCTTTCCCTTGATGGCATAGAGTGCACGCCCCTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //