Array 1 27320-26745 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYH01000007.1 Holdemanella biformis strain AF15-5 AF15-5.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 27319 31 96.8 38 ............................T.. CCCTTTCTTTCTACAATTTTATGCAAACTGTCTATTCT 27250 31 96.8 40 ............................T.. CTATGATGTAGGAGTATCAAATAATTCAACAAGTATCAAT 27179 31 100.0 35 ............................... TTGAATTCGTCAACGCTTGCCATCACACAGTCGTA 27113 31 100.0 36 ............................... AGGCTAAAACTTTACCACATTTTTTACATCGAACTT 27046 31 96.8 35 ..A............................ TCGATACGATTTTTATACTTGTTTTTCACTTTTTC 26980 31 96.8 36 ....C.......................... TAACCTACCTCCCGATTTTTGTTCTAACTGCTATGA 26913 31 100.0 36 ............................... ACAATGTTCTTGATGAACTCTATGGTTGCCATTACA 26846 31 100.0 40 ............................... TAGCTACCTTTTAACTTCTGGTCTGCCTTAGCTCCTTCCA 26775 31 87.1 0 .........................G.TT.G | ========== ====== ====== ====== =============================== ======================================== ================== 9 31 97.1 37 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : CATAATAACATGGGCTTTAGGAAATGGAGGATTAGATTTTTCTACAGTATTCTTTATGTTTCCAGGACATATGATGATATGTTCAATGATTACTGAAATGATATTTACTGTTACGCAGATCTCTTCAGTTATTCGAGAAATTATAATAGAGAAGAATAGAAAAAAGGCTATTCAGAAAAGGAAAGAAGAGAAAATTGCAGATGAAAGAAATATGTGTTCAGATGATATTAAGTATATAGAAAGCATATTAGAAGATTGTGGTTTCTTTGATGCGGGTTCAACATCTAAATAGAACTCTGACATTAAGAATAAAAAAATACTGTATATGGTTATAAAAACGAAAATCAAAAAGTATGAATTTTCGACCATCACCTTAATTTGAGCTAATTTAAGCACTGAAAATAGTCAAAAAACAGGAGGTGGTCGAAAAATATATGCCAAAATCGATCGTTTTTCAACATTTTCAGCAATTAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : ATAGTGGATTGAAATTTATTTAAAAAGTCTGTTTATTTAAACAGGCTTTTTAACTTTTGTTACACTTTTATAGGATTATTATTAGATTTATTGGGAATGGCTATAAATTATTTAATGAATAGAATATAATTTGGTTATATTTGATTATAAATAAAGGAGTTAGACATGAATGTAGATAATTTGAAAGTCTTTGAGGACTTTATTAAACTTGAATCCGTAATAAAAGAATTAGAAGAATTTATTGTTTATGTTAAAAACGATTTAGGCGATGACATGAAAAAGGTCTATCCAACTATGTTGGTGGTCGCAAAGGATGAAGAGCAGGCAGCGTTGTTTGCGCAAGGGGTCGCAAAAATTTTAAAAGAACAGAAAATAATTTCTACTTATTTAAATCGTCCATCATTCTTATGGGAGAGTGCAATTGGAAAAGAATTTGACTGTGTGCTTGTAGATGATTTTGATGATCGTCCTGCAACAAAGGTTGAATTGGAAAGAGTTGA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : GGGAAATATGATACTTATAAAGGATCGATAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 30637-30126 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYH01000007.1 Holdemanella biformis strain AF15-5 AF15-5.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 30636 31 100.0 42 ............................... TTGTCAAGTCATCTAACTTGGCCTGAATCTGCTCTGGAGTTT 30563 31 100.0 37 ............................... CCCATAACTAGGGAACATTTGTCCACCAACATACCAA 30495 31 100.0 35 ............................... TAAAGTGTTTAGATATGAATTCTTTAAGCTATCTA 30429 31 100.0 38 ............................... TCTAATGCCTTCTTTTCGATATAATTTGTTTCCATGTT 30360 31 100.0 36 ............................... TCTAAACTGACTTCGTTTGCTTTCCATCCTAAATTT 30293 31 96.8 38 ............C.................. ATTTCATCTGCTGTTTTGATTTCATTCAAGTTGATTTC 30224 31 96.8 37 .........................T..... TTTTTTCGAATAGTGGTTTTTACGACAGGTCTTGAAG 30156 31 96.8 0 .............................G. | ========== ====== ====== ====== =============================== ========================================== ================== 8 31 98.8 38 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : GAATGTGCATTTCCATTTTTGTTTCGAACAAACCCAAATTCAACCGCATCCTGGTCCAACTTCTTACACATCTCTTCATCTACATATATATTTGTGGTGTCATTTCCACTATAGTAATTTTGTTGATTCTGTTTTTCCTCTACATATTTATCATTCAATTCACTATCAACAATATCTTTATATTGAAACCGTTCAAGTTTAATTTTACTAGAACAATAAGGACATTTTATTGTTGCCATATTAGGTACCTCCTTGTGATTACTTATATTTAAAGTGTAAACAATATTCTTATATAATTCAAACAAGAGTTTAAAATAATGATAGATGGTTATACATTTACAACCAGAATATGACTAAATTTTCGACCATCACCCAAATTCGAGCTGATTTAAGCATAAAAAATAGTCAAAAAACAGGAGGTGGTCGAAAAATATATGCCAAAATCAGCTATTTTTCAAAATTTTTAGCAATCAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : TAGTAACTGTTACCGGCCATTGGATTAACTATATTTGGAAACTATGCTACTTATAAGAAGTGATTTTTGGAGGTTTGATCTCCAATTTTTTATTATTGTTTTTACGTGAATTCGTTTTAATGATGAAATATATGCTGTTTTATGTGCAGAAGTATGTTGTGTTGTAATGATGTCAGTAAGAACATGGGTTTATAGATTTTTTTGTTAAATGAATAATTGTGATTGTAATTGAAAATGCTATCTAGATTGATTAGGTAGCATTTTTTATTTGTCTAAAATTCAGAATTTTTAATATCTTAGTTAATTCAATGAAATATCAAGACATATAAGGGTTGGAAATAGAAAAAAGAGGTGTGTTCATATAAAAAGTGTTCGTAAATAAACTTAAATAGTTGTTTAATACATTGAAGTACGATGTGAAAGGGTATCTTTGTTTAACGATATTGAACATCGTTGAAAACATGGATTCGATTTAATATATAAGAGGTTCAAGAAAGAGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 68871-68425 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYH01000007.1 Holdemanella biformis strain AF15-5 AF15-5.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 68870 31 96.8 35 .........................T..... GTGAACATCTGGAGAACCTTTGACCATTTCTGTCA 68804 31 100.0 40 ............................... TCGCTGATCCACAGATTTGTTCCGTCAAAGGCTTCAACAA 68733 31 100.0 39 ............................... AAACGTTGTTATCTCTCTGGAAAAGGAGGATAACAAAAG 68663 31 96.8 37 ......................A........ TTTTGTCAAAATAAATTTTATTTTCATTTTTTCAATT 68595 31 100.0 42 ............................... TTTATTAAATTCTTTCATGTTCTACCTCCTCGCCACATGTAA 68522 31 100.0 36 ............................... AATCCATGATAATTAAGAATAGTCATGTTTTAACCT 68455 31 83.9 0 ................G........T..TTT | ========== ====== ====== ====== =============================== ========================================== ================== 7 31 96.8 38 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : TAGTTCAGACCCAGATAATCGTAGACCAACAAATTGGCAAGAACCAAAAGAGTCTTATGAAGACATTTATTATATGACTCAATTATTGATAAAACTTAGAAAAGAACATCCAGTATTAGCTAATGAAGGAAACATTGAATGGATCCATCATAATGAATTATTAATTATGAAACGAGCTAATGAAAATGAAACACTCTATATCGTAGTCAACACAAAAGAGTATACACTTAATACAATGTTGCCAATGCAAAATGAATTTATCAATATTATCAATAACGATACAATCTATACAAATATAGAAATACAAAGACTAGGCTTTATGATTTTAAAAACAATTCACGAATAATTAAACCTATATTTTTCGACCATCGACCTATTTTGACGGATTTTGAGCACCAAAAACACCACAAAATACTGAGGTGGTCGAAAAAAACAGGTCAAAATCAGCTGTTTTTCAATATTTTTATCAACTAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : ATTGAATACTAGAAATAGTATTCTTTTTTTATGTCTTGTTTTTGTTTTACTGGTTAATTTATTACTTTCCTTCGACATTTAATAGTAGTAAAGGAGTGATAAGTAATGGCTTATGTATTTCATAATCGAAATGAAAATAAAGATAAATATGATGGATTAGTAAAAGAGGCTCGTGGTATTCGTAATATGGGGATCTTGTTGACTTTGGGTTTGATTGTTTGTGTGATGATGGTTCCGTTTTCTGTAGTGTCTTGGTGTGTTGAGCTTAGTGTATTTAATGTATAAACATGGAAATGTGATGAATGAGGCTGGAATTTTGGCTAGTGGAGTAAGTGGTGAGAATAGGGTGTTTAATACGTTGCGTCAATTGCCAGATGAATATGTAGTGGCAACAAATGTTCCTGTTTCTTATGGTGAGAATCATTCGGAGGTAGATGCTTTAGTGATGAGTCCTTATGGAATGTATGTTGTGGAAGTGAAAAATCATAAGGGATTAATTG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 79838-79997 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYH01000007.1 Holdemanella biformis strain AF15-5 AF15-5.Scaf7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 79838 25 100.0 42 ......................... GTTCCCTCTTTTTAGAAGAAAGAATTGAGTCATTGAGAAATG 79905 25 100.0 43 ......................... TTCCCCCAGACCCAAACAATAGAAGTAACTATACTGCTCCTAT 79973 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 3 25 100.0 43 GTGTCGATCCTTTATAAGTATCATA # Left flank : CTGGATCCCAGTCGCATTGATCATATCCCAAATAATATGTTACTTTGAAATATCTAGCACCTTTTGAAAATAAATAGTCTACCATAGCTCTGAAATTTTCTTCCGGACTTTTGGATTGACTTTGGGTATCCAACACATATCGAGCATGGACTGCTTTTTGCGTTGAATAAGCCTTTGTTTGAATTAACTGCATATTCTTGTCCTTTCTAGACACTTTCAAAAGAAGAGATGTCGGCTAATATTACTTTTACAATTAGCCTTATTTATATTTATTTGAAATTAATTCGACTTGTATATAGGTCTTCATTTTCAGAATAATTCAAATTTGAAAGAAATACATCCCGAACAGCACTCTGAATATTTTCTGCCAATTTGATTTTATCTTCTGTGCTTATATTAGTGTTTCCTACGTCGATATGAATATCTACCGGTATGTTAAGACGAGGCAGCTCCATAACCCTTTCCATAATTCCGCAAAAAATCGTAGATTCTGGATACTT # Right flank : ATTCCCCTTACTAAATATAGCACATTTTGGACTTTGATTGCGAAAAATGTTGAAAATCGGGTGGTTTTAGCTTATTTTTTCGACCACCTCGCTTTTTTTGGTATTTTTAGGGCTTAAAATCCTTCAAATTAGGTCGATGGTCGAAAATTTTAATGGTTTGGTTGAATTATTGGCTTGGTTTTAACACACAATTGATGATTGATTAAAGAAAACTTATATCTTATTTATTTCTCCTCCCTTCTTTTTTTGTGTAGGATTCCTACAAGTCCTAGACCTGCTACCATGCTTGTTAACATGGATCCCATTACATTTGTATCAACGCCTGTATGTACAGATTCTTTGTTAGTTGTAACTTCAGTTTCTTTGGTTGATTGTGAGTTCAAGTAGTCATTTAATGCTTGCATAGCCTTATTGTAGTTGGTATCGGCATCTGTTTTTGCTTTCTTGGCATCTAGATACAACTCGTATTTTGTTTGATAATTTGCCTTGGCAATTTCTAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCGATCCTTTATAAGTATCATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 34328-35882 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYH01000017.1 Holdemanella biformis strain AF15-5 AF15-5.Scaf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 34328 36 100.0 30 .................................... TTTTAGCCAATTTAAACACCCCCTTTTAAG 34394 36 100.0 30 .................................... GCGGTCGTGGAATTGGAAAAACTTACGGGT 34460 36 100.0 30 .................................... GGTAACTTTGCTTATGATACAAATGATTTT 34526 36 100.0 30 .................................... AAGGTGGTGAAATCATGTTAAGAAAATTTA 34592 36 100.0 30 .................................... ACTCTTGGTGGATTCCTTGCACGTTGTCTT 34658 36 100.0 30 .................................... ATATATCCAGTATCTTTATCTCTTACATAA 34724 36 97.2 30 .........T.......................... CCACAAGTTATTGAGTTAGCACAAACTACT 34790 36 100.0 30 .................................... AAAATCAAAAATTTGTTAACGAGCAATTAA 34856 36 100.0 31 .................................... ATTTAAACTTAACATTTGCAAATACGTGTAA 34923 36 100.0 30 .................................... TATAAAATTCATAGAAGATGATAATTCTCT 34989 36 100.0 30 .................................... CGAAATGAGACGACCGCGATGCGGAACTGA 35055 36 100.0 30 .................................... AGCATATGTGATAGCCTCACCTAATGCGTA 35121 36 100.0 30 .................................... TTATAATCATTTACGGAAGAAAAAAAGACA 35187 36 100.0 30 .................................... TGAATGTGGTACTAAATGCATAGACGGAAA 35253 36 100.0 30 .................................... AAAGTTTAGAGGAAAATACTAAGACGAAAA 35319 36 100.0 30 .................................... CTTTAGACAAGTTTAGTCGGTTTTTTGGGA 35385 36 100.0 30 .................................... TTAAGTCTAACAAATTACGTGACGGATTGT 35451 36 100.0 30 .................................... GTAACTTTGCTTATGATACAAACGACTTTA 35517 36 100.0 31 .................................... AAAAGCGTTATTAAACAATGAATTATGTAAG 35584 36 100.0 30 .................................... GGCGCAAAGCAAACCCAGCACTAGGAAGTA 35650 36 100.0 30 .................................... ACAATGCACACTCAGTGCATACACGCAACC 35716 35 97.2 30 .........................-.......... TTTATTGTTAATCATTATTCTTTACACCAC 35781 36 100.0 30 .................................... ATGATATCATCAGCTTCTTTTACCATTTCA 35847 36 91.7 0 ................................A.TT | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.4 30 GTTTTGTTACCATAAAGATTTTTGCTAGAACAGAAC # Left flank : AAACAATTGATAAAAATGTTATCACCATATTACGAAGACGAATTACAAAAAGATGAATTTGATTTATCAAGAGATGAATTGATTTTGTTTCAATTAGATTTGATAGAATACATTTCCAATCATAATTCAAAATATGATAATATCTTTGTCTTTGGCAAACTAGATAATTTAAGTGATAAAATTCTTCAGAAAATCAATAAAATTGAGAATGTTAAATTGATCATATTTACAAATTGTTATAACGATTTAATGGATGTACAAAATACATCTTTATTGCAAGATAAAATAATAGATTTTGCAGACATGGAACAAATTTATTACGACCTATCGCAAAAATCACTTCAAACATATACGTTACAGGAGGTAGAACAAATGACAATTAATTATTTACAGCAAATATACACTCATAAAACACATGATATTTATCAAGAACTAGATCATTTTTCAATTAAATAATTAGTATTCTATTACATTCAAAAATGTGCTACCATATTTTTGAG # Right flank : TTAAAATATAAAAACGGGAGTGACACCCCGCCAGAAAGGGCAGAGGGGGGACTCCCACCTACATTTTATTGTGTAAATGTTAATTGTCCAATGAAGAATATAAATATTTTATAATACAATACAAATAAATTTAGTCCATTTTGTTACTGTATATTTTTGCTAGAATATCGTTTATTTCTCTTGTTTGACATTAACTACCACATACTCACATATACCCTCTGTTCTTGTTGGAAAACCCCAACCAACAAGGCCTGAGCTAATGATCTTTGTATAGTGCATGAATGTTTCTTTTCCGTAATTACCCGCAAAATCTGGTTGTAAATGGTAAGAGTAAGAGAGTGGAAACATTTGTCCGTTATGGGTGTGTCCGCTGAGTTGAAGGTCAACGTTGTTTTTAATGTTTTCTTTTGTTCCTTGTGGTTGATGGTCTAAGATGATGTTGTAGGTTTTATTTGTTAGATGGCAGTCTTTTGTTTTCTTTCGGTTTTTGTTTGTGTAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATAAAGATTTTTGCTAGAACAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //