Array 1 1-273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSMO010000167.1 Klebsiella pneumoniae isolate K.pneumoniae-P37_C1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTCTGC 62 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTTATACGT 123 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCAGCCCAGGAT 184 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGACATACTTAC 245 29 86.2 0 .....AA........C.C........... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : AGACCCCGAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182672-180022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSMO010000004.1 Klebsiella pneumoniae isolate K.pneumoniae-P37_C1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182671 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182610 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182549 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182488 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182426 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182365 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182304 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182243 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182182 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182121 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182060 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181999 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181938 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 181877 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181816 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181755 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181694 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181633 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181572 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181511 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181450 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181389 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181328 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181267 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181206 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181145 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181084 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181023 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180962 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180901 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180840 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180779 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180718 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180657 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180596 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180535 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180474 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180413 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180352 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180291 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180230 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180169 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180108 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180050 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //