Array 1 1-273 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSMO010000167.1 Klebsiella pneumoniae isolate K.pneumoniae-P37_C1, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
1 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTCTGC
62 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTTATACGT
123 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCAGCCCAGGAT
184 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGACATACTTAC
245 29 86.2 0 .....AA........C.C........... |
========== ====== ====== ====== ============================= ================================ ==================
5 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : |
# Right flank : AGACCCCGAG
# Questionable array : NO Score: 5.92
# Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 182672-180022 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSMO010000004.1 Klebsiella pneumoniae isolate K.pneumoniae-P37_C1, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
182671 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC
182610 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT
182549 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA
182488 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC
182426 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA
182365 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA
182304 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA
182243 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA
182182 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA
182121 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC
182060 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT
181999 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG
181938 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG
181877 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA
181816 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG
181755 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT
181694 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC
181633 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC
181572 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT
181511 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT
181450 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC
181389 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT
181328 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC
181267 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA
181206 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA
181145 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC
181084 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC
181023 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC
180962 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC
180901 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA
180840 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC
180779 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT
180718 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA
180657 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG
180596 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG
180535 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT
180474 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG
180413 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC
180352 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC
180291 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG
180230 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC
180169 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC
180108 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT
180050 29 75.9 0 ...........ATTC...A......G..C |
========== ====== ====== ====== ============================= ================================= ==================
44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT
# Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//