Array 1 1-273 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJSMO010000167.1 Klebsiella pneumoniae isolate K.pneumoniae-P37_C1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
         1	    29	 100.0	    32	.............................	CCGGAACACCACCAGTAACAGCTACTGTCTGC	
        62	    29	 100.0	    32	.............................	TGACCCTGTTGATTTTGTTCCAGGTTATACGT	
       123	    29	 100.0	    32	.............................	TTAACCTCGTCGTTCTGGTTTCAGCCCAGGAT	
       184	    29	 100.0	    32	.............................	GAACCTGAATTCGAAGGGTGGGACATACTTAC	
       245	    29	  86.2	     0	.....AA........C.C...........	|                               	
==========	======	======	======	=============================	================================	==================
         5	    29	  97.2	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   |
# Right flank :  AGACCCCGAG

# Questionable array : NO	 Score: 5.92
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 182672-180022 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJSMO010000004.1 Klebsiella pneumoniae isolate K.pneumoniae-P37_C1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    182671	    29	 100.0	    32	.............................	GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 	
    182610	    29	 100.0	    32	.............................	AAATCAGCCAGCACCACGATTCTGGGAAATTT 	
    182549	    29	 100.0	    32	.............................	ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 	
    182488	    29	 100.0	    33	.............................	GAAACCCCATCAGATGACCCTCCCCATGTTGGC	
    182426	    29	 100.0	    32	.............................	TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 	
    182365	    29	 100.0	    32	.............................	TACAGAACGACTGAGGCGGCGTGTATTGCATA 	
    182304	    29	 100.0	    32	.............................	GATCTTAACTCTATTGCCAATGGCGCAATTCA 	
    182243	    29	 100.0	    32	.............................	GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 	
    182182	    29	 100.0	    32	.............................	AATGCAGCAACCGGCAAATATATCGCCGGTAA 	
    182121	    29	 100.0	    32	.............................	GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 	
    182060	    29	 100.0	    32	.............................	CCGCAATAACAAAAATAAATGAGGGTTAAAGT 	
    181999	    29	 100.0	    32	.............................	GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 	
    181938	    29	 100.0	    32	.............................	CCCCCGCGCACATGCTTAAACGCGCTATCACG 	
    181877	    29	 100.0	    32	.............................	GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 	
    181816	    29	 100.0	    32	.............................	CAGGTTAAACATGTAAAAAATGACCGTCGCCG 	
    181755	    29	 100.0	    32	.............................	CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 	
    181694	    29	 100.0	    32	.............................	TCCGCACAGTCAAACGCTCCAGACACCAACCC 	
    181633	    29	 100.0	    32	.............................	CCGGAACACCACCAGTAACAGCTACTGTAGGC 	
    181572	    29	 100.0	    32	.............................	TGACCCTGTTGATTTTGTTCCAGGTAATACGT 	
    181511	    29	 100.0	    32	.............................	TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 	
    181450	    29	 100.0	    32	.............................	GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 	
    181389	    29	 100.0	    32	.............................	GGACCCCGAGCGACCCGGTCACCCTCCGACCT 	
    181328	    29	 100.0	    32	.............................	CCGTCGAACGGCGGTTATATCCATCTTGAGTC 	
    181267	    29	 100.0	    32	.............................	ACCGATCCCACAATTGCGGCGGTTGAGATTGA 	
    181206	    29	 100.0	    32	.............................	GTTGGTAATTACTGCTGTGTGTTACGGATAAA 	
    181145	    29	 100.0	    32	.............................	CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 	
    181084	    29	 100.0	    32	.............................	TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 	
    181023	    29	 100.0	    32	.............................	CGATAACCGGGCGTTTCGACTGAACTCACCTC 	
    180962	    29	 100.0	    32	.............................	TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 	
    180901	    29	 100.0	    32	.............................	CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 	
    180840	    29	 100.0	    32	.............................	CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 	
    180779	    29	 100.0	    32	.............................	CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 	
    180718	    29	  96.6	    32	.............A...............	TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 	
    180657	    29	 100.0	    32	.............................	ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 	
    180596	    29	 100.0	    32	.............................	CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 	
    180535	    29	 100.0	    32	.............................	CACGTCCGGAAACCACGGGTTATCCGTGTAAT 	
    180474	    29	 100.0	    32	.............................	CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 	
    180413	    29	 100.0	    32	.............................	GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 	
    180352	    29	 100.0	    32	.............................	GACATGGCGCGCGAGTTTATCGACGCCTGCGC 	
    180291	    29	 100.0	    32	.............................	GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 	
    180230	    29	 100.0	    32	.............................	GTGATCGTCATGGATATCACTGCCGTTCCGTC 	
    180169	    29	 100.0	    32	.............................	CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 	
    180108	    29	 100.0	    29	.............................	GGGTTCACTTGGGTGAAACTGAACTAACT    	
    180050	    29	  75.9	     0	...........ATTC...A......G..C	|                                	
==========	======	======	======	=============================	=================================	==================
        44	    29	  99.4	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT
# Right flank :  GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//