Array 1 36691-37782 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NGBL01000015.1 Neisseria meningitidis strain NmJP05x2 NODE_15_length_55673_cov_129.473_ID_16789, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     36691	    36	  97.2	    30	........G...........................	GTTTCTTCCCATATACTGCTGTTCAAACCG	
     36757	    36	 100.0	    30	....................................	CTTCCGTGAGATACATTTCCCAATCTTCTT	
     36823	    36	 100.0	    30	....................................	TGATTTGCTCGACAGGTGAATAGCCATAAA	
     36889	    36	 100.0	    30	....................................	AATTTAATACGGCGACCATCTCGTGCCAAG	
     36955	    36	 100.0	    30	....................................	TCATCAATCGCCCACTCAAACCCAAGCATA	
     37021	    36	 100.0	    30	....................................	CCGCAAAGCAGCCGAAAAAGCCGACAGGAA	
     37087	    36	 100.0	    30	....................................	TGACAAATAAAGCACGATTGTTGCAAAAGG	
     37153	    36	 100.0	    30	....................................	CCAACGGATAAAATTACGCCCAAGCACCTG	
     37219	    36	 100.0	    30	....................................	GTATTGAGCGTCAAGTACTCGCCATTCGAG	
     37285	    36	 100.0	    30	....................................	TGAAGGTTCGATAATTCGACCTGAAAAACG	
     37351	    36	 100.0	    30	....................................	TCACTCTAAAAATCCGATTCTACCACCGCT	
     37417	    36	 100.0	    30	....................................	TTGGCTCGTCTGCTGCCGTCAATCGTGCGC	
     37483	    36	 100.0	    30	....................................	TAGATTGCCTCATATACGCCGAGCGGGTAG	
     37549	    36	 100.0	    30	....................................	CAGGTCGTGCTGGAGCAGGCCGACGATTTT	
     37615	    36	 100.0	    30	....................................	CATACAGTTCATCTTCACCTGCAATCAGGG	
     37681	    36	 100.0	    30	....................................	TCTGCGGATTCGTACAAGTCATAAACTTTT	
     37747	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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