Array 1 546330-548796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPUJ010000003.1 Klebsiella pneumoniae strain k15 NODE_3_length_729339_cov_34.185584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 546330 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 546391 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 546452 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 546513 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 546575 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 546636 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 546697 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 546758 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 546819 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 546880 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 546941 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 547002 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 547063 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 547124 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 547185 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 547246 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 547307 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 547368 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 547429 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 547490 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 547551 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 547612 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 547673 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 547734 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 547795 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 547856 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 547917 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 547978 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 548039 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 548100 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 548161 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 548222 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 548283 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 548344 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 548405 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 548466 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 548527 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 548588 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 548649 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 548710 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 548768 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5956-6958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPUJ010000041.1 Klebsiella pneumoniae strain k15 NODE_41_length_7413_cov_63.438787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5956 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 6017 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 6078 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 6139 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6200 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 6261 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6322 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 6383 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 6444 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 6505 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6566 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6627 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 6688 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 6748 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 6809 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 6870 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 6931 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //