Array 1 142625-142990 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADCLV010000003.1 Haemophilus parainfluenzae strain M1C116_1 3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
    142625	    32	 100.0	    35	................................	TAATACACCGAGCAAATAAACAATCGCCACAAAAA 	
    142692	    32	 100.0	    35	................................	CTGTCGGGGTTGTGGTTTCTTCTGCAAAAGAATGA 	
    142759	    32	 100.0	    36	................................	AGGTGTACCATGCCCCCCAAGCCAATTATGCTGAAA	
    142827	    32	 100.0	    34	................................	CGCACAAAAGAAGATGCTCAAAAATGGCTTGATT  	
    142893	    32	 100.0	    34	................................	ATTAGATGGGCAAGCTGATGGTAAGCAGATTATT  	
    142959	    32	 100.0	     0	................................	|                                   	
==========	======	======	======	================================	====================================	==================
         6	    32	 100.0	    35	GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC	                                    	       

# Left flank :   TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGTGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTTATGTTGAAAAACAAACTGCTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTAGATGAATTAATCTATTTGTATAACGGCGATGCGGCCGTTATACTTACCAAACTCCTTATCATAAAGTCAGTTAGCGAAATACAGTGTTTAATTAGCTGATTTTTCTTACTTTTTTATGTAGGGA
# Right flank :  CATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTCTAGGCGGTTTTACGTTGCAATAAAACTTAATAAATTTAAATAGTATAATATTTGCCGCCCTACTCTATCTCTCAAGCCAATTCATGCCCAACAACATTCCCCCTTGTATTTCCCCCTTATTCGCTCTAGACTATTCGCCATTTTTAACTTTCATTATTTACAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCTGATGAGCTGATTGCTCGTTATCCTAAAGAAGATCGCTCTTCTTGCCGTTTGCTACAACTCAATGGCGAAAACGGGGAAATTTCTCACCGCACTTTTACCGATGTATTAGATTTAATCGATGAAGGTGATCTGTTGATTTTTAACAATACGCGTGTAATCCCAGCTCGTATGTTTGGTCGTAAAGCCAGTGGCGGAAAAATTGAAGTGTTGGTGGAACGTGTTTTAAGTGTACATCATTTCTTAGCGCATATTCGCTCA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.80,-5.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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