Array 1 583295-581618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053087.1 Halomonas sp. TA6 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 583294 29 100.0 32 ............................. TTCTACGTATTTATTAGCGAAGGTTTTATACC 583233 29 100.0 33 ............................. ATTGGGAGTTTCCGCACTCGGCAAATGCCGTTC 583171 29 100.0 32 ............................. CCCGGTGACTTTGGATGGCTCAAAGCCAATGA 583110 29 100.0 32 ............................. CTTCTGGTTTGGGGCAGACCGCTATCTCCAAT 583049 29 100.0 32 ............................. TGTGTATACACATTATGATATATGTTATTGCA 582988 29 100.0 32 ............................. TACAAATTGACCATTATGTGAGATAGTCCCGG 582927 29 100.0 32 ............................. CCCGATGGAAATGTATTATTCGCTTGGATCAA 582866 29 100.0 32 ............................. CGCACTTTGAAATAAGCCCATGGCGTAACGAT 582805 29 100.0 32 ............................. CGTACAACAATTATTACACCGTCGTACATTTG 582744 29 100.0 32 ............................. TATCCGCTCCAATACACACTAGAATGCATTAT 582683 29 100.0 32 ............................. GCCATTATTCATTGCGCTATACGTCAACAGGC 582622 29 100.0 32 ............................. ATAAATGGCTAGTCTATAATTTATAGACCCAT 582561 29 100.0 32 ............................. GCGTGTTTAAAGGCGTGTCGGCAAATGTTGGC 582500 29 100.0 32 ............................. GCGACGTGCTCGATGCTGATTTAACTGTCGTA 582439 29 100.0 32 ............................. TTTGCAGGTGCTCATAGCCCCCACCCTCGACG 582378 29 100.0 32 ............................. ACATTCGACGCGAGGTGATGAACGGCATATTA 582317 29 100.0 32 ............................. AATCCGGACTTAGCGTTAAATACCCAATACCC 582256 29 100.0 32 ............................. CGGCCAAGTAGCTCGGGCACGCGCGAGCCGAA 582195 29 100.0 32 ............................. TCGCGCTCGTCTAGCTCGCCGCTACGCAGCGA 582134 29 100.0 32 ............................. CGTTGAAGCGATCGAGCAGCACGCCTACACTG 582073 29 96.6 32 ............................C CGCCAGAAACGAGATGAGCACGTCCTCGCCAC 582012 29 100.0 32 ............................. TCAAGCGCGCTCTTGACGGCGCTGTCCAGCAG 581951 29 100.0 32 ............................. TGACGCTTGGCTGGGGTGGTGAGGAATACACC 581890 29 100.0 32 ............................. GGTATGTCCGATGAGTCGTCCATCATGCCCTG 581829 29 100.0 32 ............................. CGTTTCATTTTCGTCCTTTGAACGCCGATGCA 581768 29 100.0 32 ............................. TCTGGACGCTCGGATAGGCGAAGCTTTGTCAT 581707 29 100.0 32 ............................. GCGGTGGCGCCGACCATCGGGCAGGTGCCGGT 581646 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GTGAGATCGAACCGCCGCTGCCACCCGCGGACGCTGTGCCACCCGCCATCCCTGAACCGACATCGCTGGGCGATAGCGGCCACAGGAGTCAATAGGATGGCCATGATCGTTGTCGTCACCGAAGCCGTACCGCCCCGCCTGCGTGGACGGCTGGCCGTCTGGCTGCTGGAGATTCGTGCAGGTGTGTATGTCGGCGATGTCAGCAAGCGCATTAGAGAAATGATCTGGGAGCAGGTCCATGCCCTGGCAGAGGATGGCAACGTCGCCATGGCCTGGGCTAGCAACCATGAATCCGGCTTCGAGTTCCAGACCTATGGCGCTAACCGGCGTGAGCCTTGGGATCACGATGGGTTGCGTCTGGTGCGCTTTCTGCCCATCGAGGCTAAGTGATTGGTAATACAGGATCTTTAAAAATTCAGGCTGTACAAAAAACAGGCAAAATCGTCGGTGGAATTTCTGCTGGCGATTTTCCTTTTGTAGATCAACTATCTACAATTAGA # Right flank : CATGCCCGCTGCGCAGCCCTCGGTATCCACGACCGGATTCGAACCTCCGACCCCCTGATTCGTAGTCAGGTACTCTATCCAGCTGAGCTACGGGCGCTTGATCATCCACTGCAACGCTTCGAATTCGAAACGCTTGTATCGATGATGTTTTAACATCAATGGCGGAGAGGGAGGGATTCGAACCCTCGATGAGGCTATAAACCCCATACTCCCTTAGCAGGGGAGCGCCTTCAGCCACTCGGCCACCTCTCCCTCATCGACACGGCGCGTATGTTACCGTTTCTAAAGCACACTGTCCATCATTAACGGCAATTTTTTCTAAACGACCAGATCCAAAAAAGCCGGCAAGTGACCCACCTTACCGGCCCGGGCGACAACCTGATGTCAACAGGCCTGCCTCAGGCCTGAGACTCTCCCTCGGTTTTCTCGCGCTGAATCCTCTGATAGATCTCTTCGCGATGGACCGACACAACCTTAGGTGCATTGACACCGATACGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2923211-2920435 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053087.1 Halomonas sp. TA6 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2923210 29 100.0 32 ............................. TCCCAAGACTGGGCGACCGGCGAGGGCGTGAT 2923149 29 100.0 32 ............................. GACGATCCCGGCACATGGACGTGCCTCTACCT 2923088 29 100.0 32 ............................. TTCCTGCATTTGACCAGCCGTCGCCCGGCTAA 2923027 29 100.0 32 ............................. CCCGCTTATCGATGGCAGTCGAGAGCGGGCCA 2922966 29 100.0 32 ............................. TTCAATGTTTCCGTCATGCCCGACAGAGTATG 2922905 29 100.0 32 ............................. GGAATCGAGTCATCGAACTCCTCGTAAGCAGG 2922844 29 100.0 32 ............................. TTGATCTGGCCAGTGACCTTCTGCCCTGACTC 2922783 29 100.0 32 ............................. AGTTGAGCAGATCGCTTATGCGAGTGGACAAA 2922722 29 100.0 32 ............................. ATCGTGCACGGCTTGGAGTGTGGCCAGGTCAT 2922661 29 100.0 32 ............................. CTTGGTACTGGTCATCCACCTTCACCCCGGCC 2922600 29 100.0 32 ............................. CCGATTGTGCTCACGGCGGCATGGATGGTGGT 2922539 29 100.0 32 ............................. GCATGAGCGATCACAAGCGCTGCAAATGCGGC 2922478 29 100.0 32 ............................. CTCGTGTCGAGCAACTGGATACAGGACGGCTG 2922417 29 100.0 32 ............................. TCATACAACTCGACCTTGCCCGGTTGCGGGCT 2922356 29 100.0 32 ............................. AGATGCTAGCCGATGCGGCAGAGCTCCAATCC 2922295 29 100.0 32 ............................. CATCTGCTCGCGAGCTTGAGACGCGCGCAGCT 2922234 29 100.0 32 ............................. CCCTAACCGCCGAGCTATTGGAGTTTGCCAAA 2922173 29 100.0 32 ............................. CTGCTGGCCGTCTACAACACCGGCTTTGGCGA 2922112 29 100.0 32 ............................. TAGACGCTATCCCATCAGAGGCGGCAAACGCC 2922051 29 100.0 32 ............................. TCCTCGCTGCTGGGCGGCGCTGCCAGGCATGC 2921990 29 100.0 32 ............................. TTGGAGTATGCACACAGAATTTCATTTGAAAT 2921929 29 100.0 32 ............................. CGGAGGAAATCGTACTGGATGTAGAGGATGGG 2921868 29 100.0 32 ............................. TTCTCGAAACCTTCGGAGTTAAGGTAGCGTTT 2921807 29 100.0 32 ............................. CCGACTCAGAAGCGCTTTCAGCGGCTTCAATT 2921746 29 100.0 32 ............................. TTTCAAAGGTCTACGTGATTCCATGTGTGGAT 2921685 29 100.0 32 ............................. CAGCGGCGTTTGTTGCTGTAACCCCATTTCTA 2921624 29 100.0 32 ............................. CCACACCACCACCGAAGGAGCAGCACAGATGA 2921563 29 100.0 33 ............................. GTGAAGAGCACACCTACTTTACCATCTATCATG 2921501 29 100.0 32 ............................. AACAGCATTTGATTGATGCTGCACAGGTTGAC 2921440 29 100.0 32 ............................. AGGACACCATGACCAAGATCATCAGCTTCGCC 2921379 29 100.0 32 ............................. GCTACACGTACCGGGAAGACACCGACGAAAAC 2921318 29 100.0 32 ............................. CCGTTGAGTCCTTCGCAGCCGGCGGAGCCCCC 2921257 29 100.0 32 ............................. GCCATCCAGAGGACTCTCGGGATACTGGAACC 2921196 29 100.0 32 ............................. CCCGCTGCGTGCGGGCACATTTCGAATACTAT 2921135 29 96.6 33 ............................A ATTAGTGTCGCAAATGTCGCGCACGCTTGCTGC 2921073 29 100.0 32 ............................. GAGACGCAGGCATGAATAAATCCGGACACGGT 2921012 29 100.0 32 ............................. ATAGTACCAACGCAGCCGCGTACAATACGAAA 2920951 29 100.0 32 ............................. ATGCGGCACGTAGCGGCATTAGTCACGCGGAG 2920890 29 100.0 32 ............................. TTAATAACATGAGGAAGACCCTGACTATCACT 2920829 29 100.0 32 ............................. CATACTGACTATGAGGGTCACTGGCCTCTTCG 2920768 29 100.0 32 ............................. GCTGGCTTGGCAGGTGGTATTCAATCAAAGGA 2920707 29 100.0 32 ............................. GCTGCTATAGCAACTCTCACCGGGAACTCAAT 2920646 29 100.0 32 ............................. CCTGGGGGCCATGGCTGGTTGGTCTTAGTGAT 2920585 29 100.0 32 ............................. GGAGATGACCAGTGGAGCATAGATCACACGAG 2920524 29 100.0 32 ............................. CCTTGCTCCATTGCAACGTAACCTTGGTAACT 2920463 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : TCTTCAGCGTGAGGAGAACGTGCTGATGCTGGGCCCTTTCCAAGGCAAACCCGCCTGCAATCCCATCCCCTTCAGCAAGGGGGTATGCGGCATGGCGGCGCGTACGCGCCAGACGCAGCGCATCGAAGATGTACACGCCGTGGCCGACCACATCGCCTGCGACGCGGCATCGCGCTCCGAACTGGTCGTGCCGATAGTGGTGGGAGAGCGACTATGGGGCGTGCTCGACTTGGATAGCCCACGCCAGGGGCGCTTCATGCATGAGGATCAGACGGGCATTGAAGCATTGGTAGCGCGCTTCGCCGCCGCCACGGATCTCGAATTCTGGCCCTGAGCATTGCCGCGCCTGACAATCCGAGCACATACGAAAACACCCCGAGCACTGACGCTCGGGGTGTGGAGTCTGGTAGGACCAAGCGGATTTGAACCGCTGACCTCCACGATGTCAACGTGGCGCTCTAACCAACGTGTTGCCGGTAGGCTGCATCACATCGCTCGAC # Right flank : GCGAGGAGTAGAGCCAATGTCGACCCTTCCCACCGACGTGCAGCAGCGCTACGACGATGTACGACATGACGTGCAGCAGCGCTACGACGATGTACGAGACGACGTAGCAACTCGCTATGAAGAAGTTCGAGAGAGTCTACAGGCGCGCCATGACCGTATCGTCGAGGAGTTCAACCTTCGCTACGACGCCTTTCGCAGCGACTTGAAGGCACGCCATGAGGATTTCAAGAGCGACGCCGCCGAGCCCTACGGCCTGAATTTCTGGCTCACTCGCCTCGCCGCAGACGAGGTGGAACCCAGAGAGCTGCTCCATATCCTTGCCGCCTTCAAGGAGTACGAGCGCTATCTGGAGCAGCTCGACAGCAACGAGACCATCGAAGATATTCATCTAAGACTGTTTGCTCGCAGTATCGATCCTGAAGATAGGGAGTACTGGGCCGGACGACTCGAAGGCGGGGAGTCCACCTTCCGCATCATTCAAGGCATGCTCAATGCGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3732464-3731958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053087.1 Halomonas sp. TA6 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3732463 29 100.0 32 ............................. TTATGGATAAATACTGGCTGGCTAAATATGTC 3732402 29 100.0 32 ............................. GAAATGAGTCAGCGCGAACAAATCATCAGCCT 3732341 29 100.0 32 ............................. TTTGCCCATGATCTGCGTACACATAAACAGGT 3732280 29 100.0 32 ............................. TCATACTGCCGGAATTCGCCCTTCCAGTGGGT 3732219 29 100.0 32 ............................. TGCCAGGAGTACGCCCGGACCTTCCCTGAGCA 3732158 29 100.0 32 ............................. CTTGGGGAAGAAAGGGTGGAGTATGCCTTAGA 3732097 29 82.8 22 .....................TC.C..GA AGTCTTGCGTCACGATCTCGCC Deletion [3732047] 3732046 29 96.6 31 ............................C CGAAAGGATTGCTCGAGTATCACGTCCGCTG 3731986 29 75.9 0 ........TG......CA...C.C...A. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.0 31 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCGAGGAGTAGAGCCAATGTCGACCCTTCCC # Right flank : GATGGCTGTACCATGGGTGCGGGCGACCACCCCAAGCGCGGGGTTCGCTGCCACCCAGACAGCTCAGGCAGGAGTTCGCTGTCGCCCGGCCAAGCCCAACGACAGCAAACAAGTGGCCTATCTCGTGAGATAAGCCACGTCATTACTTAGAACCTTAGAAAGATTCCCACTCGTCGGCCTGGGTGGTCGGCAGCTTGCGCTTTGCGATAGCGGGCGCTGGAGTCTGGGGAAGCTGCTGTGCGCTGCGTGGGCGCGAGGACTGGCTGGCTAGTGTGGCAAGGTCGTCGGCACCAAGGGTGAAGGTGGCCATCAGCTTTTCGAGTTGCCCGGCCTGGTGGCGCATCTCTTCGGACGCCGCGCTGGACTGCTCGACCACGGCGGCGTTCTGCTGGGTCATGGTATCAAGCTCGGTCACGGCGGTGTTGATCTGCAGGATACCGTCGCTCTGCTCCTTGGCGCCGGCACTGATCTCGCCAATCATGTCGCTGACGCGTTCGACC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //