Array 1 1173655-1170387 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDRS01000010.1 Listeria monocytogenes strain A10 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1173654 29 100.0 34 ............................. CCATCCACGTGGACGGGACTTCTTTTACATCAAT 1173591 29 100.0 36 ............................. TCAGCAAACCAATCCATTCAAGACGCCTTTGTGTTT 1173526 29 100.0 35 ............................. TAGTATCTCACTTCAAAACTATCTGTGTCACTATT 1173462 29 100.0 36 ............................. CAAGAAGCACGTAAGATGTTTGTAGCACCAGACAAC 1173397 29 100.0 38 ............................. CAAAAAGAAGTCGTATCTGAAAATAGCAAAGCACCTCA 1173330 29 100.0 37 ............................. GACACTCATTTTTGCTGCTTGCTTACTAGTGACCTTT 1173264 29 100.0 36 ............................. ACTGATAACCCTAATTTTGTAGCAATTACTGAAAGT 1173199 29 100.0 34 ............................. CCTGAAATGGGGGCTTTTTTGTGATGAAAAACAC 1173136 29 100.0 35 ............................. TGGTATAAATCTAAAAATACACAAGTTGTAAATGT 1173072 29 100.0 35 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAA 1173008 29 100.0 36 ............................. CTAAAAAAGATTGGCAGAATGGAAATGTGTATGTGT 1172943 29 100.0 34 ............................. CCATTACGTTTGCCTTGTTGTTAAAGCTTGCAAC 1172880 29 100.0 35 ............................. AGCTGTAGCACCTTTCTGCAATCTTTCAGCCTCAT 1172816 29 100.0 35 ............................. AAAGTAAATGCCGTAGAAACGTCCTCACAACCACA 1172752 29 100.0 35 ............................. ACAAGTGGCTTAATATAAAACGTTGGTGCTGTGGG 1172688 29 100.0 35 ............................. TGATAACCGTCAAATAAGTCAGTGTCAACTTCGTC 1172624 29 100.0 35 ............................. GTTGTTTTTTATGTTTAGCATCCATAGTCGTAAGG 1172560 29 100.0 36 ............................. TTCGAAAAGTCTGTTTTGCCCTATGTCTAATCCTTT 1172495 29 100.0 34 ............................. ACATTCGAAGTGGAGTGGCAACAAAAGCCTTATA 1172432 29 100.0 37 ............................. AAGTTAATTATTGAATGCTATCCAGAAAGAATAGAAG 1172366 29 100.0 36 ............................. GTGCTTAAAACGATGACAAAAGTAGGAATAACATCA 1172301 29 100.0 36 ............................. TTGCTTATAGAAGCTTATTTGTCTATTATTACCAGC 1172236 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 1172171 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 1172105 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 1172041 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCTGTTTTCAATTATT 1171976 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 1171912 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 1171848 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 1171783 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 1171718 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1171652 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 1171587 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 1171522 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 1171458 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 1171394 29 100.0 37 ............................. CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT 1171328 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1171263 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 1171197 29 100.0 35 ............................. TTGTTTATATGCACATAAATTTCGCGCATCCATAA 1171133 29 89.7 34 CG...T....................... TTTATACGTATGAGTCCGTCATATCGCATATTTA 1171070 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 1171005 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 1170938 29 100.0 37 ............................. ATTACTTAATTCTAGTTACGTTGCTGCGTTTACTTCT 1170872 29 100.0 35 ............................. AAATTTTTTGTTGATAAGCATGCAGGAGCAAACAA 1170808 29 100.0 37 ............................. CAGTGATTATGCTAAGACCTACACAATCGTTATCACT 1170742 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 1170677 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 1170612 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 1170546 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1170482 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 1170416 29 93.1 0 .......................C....C | A [1170391] ========== ====== ====== ====== ============================= ====================================== ================== 51 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGTGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGCTTCTGCCATTCCAGCTCCAGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1190303-1189949 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDRS01000010.1 Listeria monocytogenes strain A10 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1190302 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 1190236 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 1190173 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 1190109 29 96.6 37 A............................ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 1190043 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [1190019] 1189977 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATTGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //