Array 1 246872-247171 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000003.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 246872 31 96.8 38 ................A.............. TGATTCATATGACCCATTAAATCAACGATTGTTGTACC 246941 31 100.0 34 ............................... AAGGGCGGCTTTACGGGCGACAAACCGGCTGTAG 247006 31 100.0 38 ............................... AGATGACCCCCAAGAATGTGCATCATCTCGTGCTTCAG 247075 31 100.0 35 ............................... TAAATCGCCAGTCCATCCATCACCGATCCGCCGAG 247141 31 83.9 0 ..............A........C...CGC. | ========== ====== ====== ====== =============================== ====================================== ================== 5 31 96.1 36 GTCGCGCCCTCACGGGGGCGTGGATTGAAAC # Left flank : CCGCGTCACGGTCGATCTTCAGGCGGTTGATCTCGGCCACCAGCGGGGCGAGCTGTGGCCATTCGGTGGCGGTAATCAAACCCTCCAGCGCGGCTGGCAGGACGGGAAGCGCGGGTGTTTCAGCGTTCATGGTCGGCTCGTGGGCTGCGGGGTGGAGGGGGGGGTGCTTATGCTCCCCCTGAGTGCGGTCTTTGTGCTCGGAGGGAGGGCTGTTTTTGTGCTCTGATAGAGTATTTATCTTATACTCGTATAGAGCATAAAAAAGTGAAAGGCAAGCCCGTTGCCGATCAGCAAAGGGAACAAGGGCGTGGAGACGGCTGTTTGCGCGAACCTCAAGCGTGCCGGAATTTCCTGGGAGGTTCGCGCTGGCGTATCGTGTTGAAAAATAAGGATTGTCGTTTTCACATAATATGTGTACATGCAATTTTCGGAAAAAATGCCCGAGGTTCGCGCAAATGCCCTCTTTTCCTGAAGAAAACTAATCTGTTACACTACCCGCC # Right flank : CATGCCACCCGGTGGAATGGTCCCGCTTTTCGTCGATGACCAAAAAACGGGGTCCGGGGCCTCAAGGCCCCGGCGAGGTGTGGAGCAGCGCTCCACCTCCCTTCCTTCCCCTCTGGCTTAACCCTGCAACCGCCCGGCCACCTCGGCCAGCGCACTGAACGGCGAACTCCCCGCCGCCAGCGTCAGGGTTCCGGCCCGCTTCAGGCCCTCGCGGCCAAAGCGCTCGCGGACGAATTCGGCCAGCCAGTCCTCGGCCTGCGCCTGCCGGACACTCGCCCGCTGGGGGCCGAGATGGGCGGCGTGTTGGTCGATGGTGTCGATCACCTGATCCACCCCTTCGCCGCGTTGGGATGACACCAGCAGCACCGGAATCAGCCAGTCGCTTTCTTCCGAGGCCAGCGACAGCGCGCCTTCGACATCGGCGCGGGCACGGCGGGCTTCGCGGTCCATGTCGGCCTTGGTCACCAGCACGATGTGGGGAATCTCGGCGATTCCGGCCT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 308346-309177 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000003.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 308346 32 100.0 35 ................................ GCGTGAGACTCGCAAGTCCGCGCAAGCCCTCGAAC 308413 32 100.0 33 ................................ GGGCGCCGCGCGCGGCGGCTCTACTGCATCATT 308478 32 100.0 36 ................................ AACGGCGCGTTGATCCAGGCTGCTCCGCTGCTGGAG 308546 32 100.0 36 ................................ TTGCCGCATCAACTGCGCATCCTCATAATCAGCAAA 308614 32 100.0 36 ................................ TGGTCACCAAGTGGGCCCTGGCTGTCAGGGGCGATG 308682 32 100.0 35 ................................ CGCCATTATGGCTTATGGCAAGCGGAACAAGAGAC 308749 32 100.0 34 ................................ CGGGTCCCGGCCCAGCTCTTGGGCGACCTGCCGG 308815 32 100.0 34 ................................ TCACGGACCAACTGAGTATTGATGCTTTAAGTGT 308881 32 100.0 33 ................................ ATCTTGATGGTGCGGGCCAGCCCCATCAGGTCG 308946 32 96.9 35 ...................T............ TTAGTAGTAATATATGTCTTGGTGATGGTTGGGCG 309013 32 100.0 35 ................................ ATCTTCAAGATACCACATAAACATCTCCTAAAGAG 309080 32 96.9 34 ..............A................. CCGTGCTCGGTGTAGACGTTGATGTTGGTATCAA 309146 32 81.2 0 .......T......C......C......TGT. | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.1 35 GTCGCCCCCTTCACGGGGGCGTGGATTGAAAC # Left flank : GACCACCGGCTGGCCAACGGCAACGGTGGTGCGCGGCCAGATCGTCATGCGCGACGACGAGTTGCAGGGGCAGGCCATCGGCGAGCCGGTGCGGTTCCTCGATACGCTGCTGTAAGGGTTTGTTGGGGGGGAGTGTGGGCTACCGCCCACGCCCGTTCGGGGGCTAGAGCGTTTTCACACCGAGCGAAAACGCTCTTCCCTTTGAGTGCCGCATTTTCCGAGCCGTTGACCGGAGACGGTCAACTTGAAAATGCTCTAATGCCCCCGATCCCCCCTTTTTTCCTTGATGATCTATCTGGTGTCATGGGGGGCGGTGCGCGTTGGCGCGAACCGCAAGCGTGTCGGGAGACTCCGGGAGGTTCGCGCTGCTCTATCGCGTTGAAAAATAACGATCTTGATTCCTGTATTATTTGTATACGTATGTTTTGCCGGAAAAATGGTCGAGGTTCGCGCAAATGCCCTCTTTTTCTGAAGAAATATAATCTGTTACACTACCGGGA # Right flank : CGGCATCCAACACACCTCTCCTCCACGATCCCCGAGCAAAAAAAGGCTGCCCCCGAACCTGTACGGGGGCAGCCTTTTTGCGTCATACCTGAACTCATGGGGTCCGGGGCCTGAAGGCCCCGGCGAGGTGTGGAGCAGCGCTCCACGTCCCTGTTTTCCCCTGTGTCCTGCTTTAGATGGCAGCCAGCGCGGCGGCATAATCCGGCTCGTCGGCGATTTCGCTGACCAACTGGGCGTGACGAACCACGCCGTCGGCACCGATCACCAGCACCGCACGGGCCAGCAGGCCTTCGAGCGGGCCAGCGGCAATGGTCAGGCCATAGCGGGCACCAAAGCCCTTGTCGCGTAGGTCCGAGGCCGAGACCACCGCGTCCAGACCTTCGGCACCGCAGAAGCGCTTATGGGCGAACGGCAGGTCGGCACTGGCGCACAGCACGACGGTGTTCGGCAGGGCGGCGGCCTTGGCGTTGAAGGTGCGGACCGAGGTAGCGCAGGTTGGG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 238028-238656 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000005.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 238028 31 100.0 34 ............................... TGGTATTCGCAAGCTAAAGGCGGTCACGCTTTAC 238093 31 100.0 34 ............................... CTCTTGCGTCGGGCCATCGCCGAAGGTCGCTACG 238158 31 100.0 34 ............................... GTAGTTCGTTGGTCGTCTCGATGCCCAAGCCTTT 238223 31 100.0 36 ............................... GAGGCTGGTTACGCGATTGATGAGGTGGCCCAAGTG 238290 31 100.0 34 ............................... AAGGGGGCGACTATGACCCAATTGACGTTCTGGT 238355 31 100.0 35 ............................... GGGCGCAAAGGTCGATCCAAGGCCGGTTTCCGCCC 238421 31 100.0 36 ............................... CGTCGCTGATCCAGAGCGACGGAAAGCGCTGGAGAC 238488 31 100.0 36 ............................... AGCTTCGCGATCTGGTCCTTCGAGAGGGACCGGGTG 238555 31 100.0 35 ............................... CCCCTATGGTCGAGCCTGATGGGGGCCTTCGGGCC 238621 31 93.5 0 .........................CC.... | ATC,C,C [238642,238647,238654] ========== ====== ====== ====== =============================== ==================================== ================== 10 31 99.3 35 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : GATCCCAGTGGAGGGTGGCCGTTTCCGACGGCAAGGGGGCGGCTCCCTTGCCTCCCAGCAGGCTGATGCACAGGGCGATGGCGAGGCTGCTGCTCATGGTGGGGATGGTTCCGGCGGTGGGGGGACAGGGGGAAGACGCCGCAGTGTAGGCGATAACGCCGCCTGCGCGAACCCCAAGCGTGTTTTTCCATCCGAGGAGGCTCATGGCCGTCTGCCGATCCCGCCAAGAGGTTGAGTCCTTTGCTGGCTGGGGATTCGTTTTGTTTCTTTTCAGTATGATAAGGCCCCAGGTAGTGACGGCTCCGGCGGGCTGTTGGGCTGTATTTACCGGCGGTGGGCCGTCTGTGCTTCCGGGGAGGTTCGCGCTGGGATAAGTCATTGAAAATAAAGAAGAGTGTTCTTGATATTGTTTGTATACATATTATTATGCGCCAAAATTATCGAGGTTCGCGCAACAGGCCTCTTTTCTTTTGCAGCATCAGGTTGTTATAGTAGAAGCC # Right flank : CCGCCTCTGTTCTTGGATCACCGACCAAAAAAGGCTGCCCTCGAATCTGTACGGGGGCAGCCTTTCTGCGTTACGCTTGTCTTCATGGGGTCCGGGGCCTCAAGGCCCCGGCGAGGTGTGGAGCAGCGTTCCACGTTCTTGTTTCTCAACTGTGTTCCCCAATCGTGTTCCTCAACCGTCGTGTCCCGTGACTCTGCCGCTCTGCGCTCCCCTTACGGGGGCGTACACTGGCGCAATCCCTGTCGCAGGTGATCAACCATCATCCGCACCTTGGGGAGTGTATGCCGCCGTTCCGGGTAGACCGCCCACACTGCCGTGTTCGGGGGCTGATGGCCGGGCAGCAAGGACACCAGCCGCCCGGCGGCCATGTGGTCCTGCACGTAATAATCCGGCAACTGGCACAGGCCGAACCCGCGCAGGGCGGCGTCGAGGATGGCGGTGCCGCTGTTGCAGCGCCAGTGCCCGTTGCCATGGCTATGGGCCTTGAACAGCCAGTCTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 321154-321709 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000005.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 321154 31 100.0 34 ............................... GTCAAGCAGATTCAGGCCTGCGGCAAGACCGCCG 321219 31 100.0 35 ............................... GCCGGTATCCGGGTCGTGGGGGATCGTCTGGGTCG 321285 31 100.0 34 ............................... TTGTGACTGGTGCGGATGTATACCCGCACCGCCA 321350 31 100.0 34 ............................... TGGGAGGCAGGCCGATGAAGGCCGTCTCCCATCC 321415 31 100.0 34 ............................... AGGCGCAAAACTGCCCTGTGTCATGCGAACAGCC 321480 31 100.0 34 ............................... TGCCCGCTGGCCATGGCGTCGGCCATCACCCTGG 321545 31 100.0 33 ............................... GCCGGGCAGATCCAGTTCCGGCTTTAAGGCAAA 321609 31 100.0 39 ............................... GCACCACTCCACATACCCGGCAAGCGCCCAATTGAGGAT 321679 31 71.0 0 ....................C..GGCATGTA | ========== ====== ====== ====== =============================== ======================================= ================== 9 31 96.8 35 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : CTCGCGCGAAGAACTGCTGAATGCCGTCTGGGGCCCGGATATCTATGTCGAGCCGCGCACCGTGGATGTGCATATCCGCCGCCTGCGCAAGGCGCTGAACGGCGATACCGAAAGCGACCTGATCCGCACGGTGCGCGCCGCGGGCTATGCGCTGGATGCGGACCCGGCGTTGCAGGGCAGCGGGGTGGCCTGAAGGCCCCGGACCCCGTTTTTTCAGGTCGTGCTCCATGACGGCGCGGCTGTGACCGGGTAAAAATGATCGAGCCGCAGGGGATGATGCCAGACCGGTATCATCCCCTGCGGCATTTTCATGTCGGCAGGGTGCGCGAACCCCAAGCGTGTCAGAAAATCCCGGGAGGTTCGCGCTGAGGTAATGTATTGGAATATAAGGATTTTGATTCTGTGAATGTATGCGTACATATCATTATGCACAAGTATTCCCAAGGTTCGCGCAAGAGGCCTCTTTTCTTTAATGAAAACAGTTTGTTATAGTGGTGGCC # Right flank : ATTAACCCCCGCCGGATACACCGCGCCTGTCACAGCAAATACCCCCTGCGCGATCACGCAGGGGGTATTTGATTTTGACGGCTGGGGCTGATGCGACCTGCGGCAAGCGTAAAACTCACGGGGTCCGGGGCCTGAAGGCCCCGGCGAGGTGTGGAGCAGCGCTCCACGACCGTGTTTTCCTCTAAAAACCCTCAGCCCGGACGGCGTCCGTAGCGGATGAAGTCGGTCCACGTCCGCTCGACGCTTTCCAGCGTATGGATGGCGCTATCCATCTGGGCGGCGGACAGCCCGGTCTTGCCCATTTCGTCGGACAGATAGGTTTGCAGCTCGCGGATGTGATCGCACAGGGTCATGCCCTTGTCGGTCAGCTTCAGGCGGATGGCGCGGCGGTCGTGGGAGCAGCGTTCCTGTTCGAGATAGCCGGTTTCGGTCAGCTTCTTGATATTATAGCTGACGTTGGAGCCGTGGTAATATCCCCGGTCCTTCAGGTCGCGGATCAC # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 330599-330758 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000005.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 330599 31 100.0 34 ............................... CCGTTTTTTTCTGCCCGGCATCCGGGGCGGCGTT 330664 31 100.0 33 ............................... GTCTAATGGTTCACGTGGTGGCCTGTCTCGCGT 330728 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 3 31 100.0 34 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : AAAGCCGTCTGGAGGGCATCATCAACCCCGACTGCGACAGTCTGCGCTATTACCATCTGGGGGCAAACTGGCAGCGCCGGGTGGAACATGTCGGTGCCAAACCGGCGACCGACCTGAACGGCCCCTTGATCTGGTGAGGGGTGGGCGGGATCGCCGCGCGAACCCCAAGCGTGTCGTGAGCCTTGGGGGGCTCGGTCTGCGACAGTACCGTGGAGCGCTGCTCCACACCTCGCTGGGGCCGGTCGGCCCCAGACCCCATTCCTTTGATTATAAATGAAAAACCTGAGGGCGGGCCTCGGGCGGGTTCGGTTGGTCGCCCGTTTCCAGAACTGGAGTGCCGTCTCCTCTGTCCGGGGAGGTTCGCGCTGCTCCAAGTCATTGAAAATATTTGATTTTCATTTTCATATCATATGTGTACATATATTTTTACGGAAAAAGGCCGGAGGTTCGCGCAACAAGCCTCTTTTCTTTTGCAGCATCAGATTGTTATAGTGGGGGCC # Right flank : CAACGGAAAATTTTGCGGCCTCTTTGACCGCGTGCGTTGCCTCCTCACGCCAGTAGGGCTGTCCGCCCCTGCTGGAAGGGGGCGTATGCCCACCCACACTCTGATGCCTGAAAAAACGGGGCCTGGGGCCTGAAGGCCCCAGCGAGGTGTGGAGCAGCGCTCCACAATCCTTCCCTCCTCCCCGCTCTCCGCCGCGCCGCACAGGGCCTCAGCGGGTGTAAACCGCCGTGATGCTTGCCTTGCCGATGCTGTTGGCGCGGACCATGAAGCCCGCCAGCGCATTGCTGGCATCCTGCGGCAAATCGAGCTTTTCGACCCCCAGAGCGTAGACGGTGAACACATAGCGGTGGACTTCGCCGGGGGGCGGGCAAGCCCCGCCGAACCCGGCGACGCCGTAATCGTTTTTCAACTCGCTGGCTCCGGCGGGCACAGCCTTTGAGCCGCTGGCCCCGGCGGCCAATTCGGAAATGGTGGCCGGGATGTTCACCACGTTCCAGTGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 101095-100868 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000001.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 101094 31 100.0 34 ............................... AAAATCATCCACAAAGAAGGGACTTTACATGGAA 101029 31 100.0 34 ............................... GGCCTCGTAAAAGACCGTCTCGCCCTTGGCGTGG 100964 31 100.0 35 ............................... GGCGGCCCGGCCTGCGGCGGTGACGATGGTTGTGT 100898 31 96.8 0 .............................G. | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : CTCCTATCTGCACGATGTCCGCTGTGACGTGGTCGTCCACCCTTATCCGGCACTGGTGGGGCTGCGCGGGGTGATCGGCTGACCATGTCTGTGGCGTTGCGCCGTGCGTTCAATCTGACGTCACTGTACACGACAGCAGGACAGCAAGGACGTGGAGCGCTGCTCCACACCTCGCTGGGGCCTTGAGGCCCCAGACCCCATTCCTTTGAATTCAAAGAAGAAATGGGGGTTCTGGTCTGACCTTTTGGTTTGTCGCACTGTTTTTGCGAAAGCCGGTTCCCGCTTTTCGCACAATGCTCGAAAGGCCGCCCGGTGGGCGCACAGCGCGAACCTCAAGCGTGTCGGCATTTCCGGGGAGGTTCGCGCCAGCGTAATCTGTTGAAAAGACATGATTCTCTTTTTCACTTTATATGTACGCATATATTTATGCACTGGAATTCCAGAGGTTCGCGCAACATGCGTCTTTCCCTGAGTAAAAACAGTCTGGTACAGTGGGTGCC # Right flank : TTCGTTTTCTTTAAAACGGGTGATTGCCTGTTCGCCCTCGCTCCCCACAGAAACACGACAAACAGACAACAGGATCATGGAGCGCTGCTCCATACCTCGCCGGGGCCTTCAGGCCCCGGACCCCGCTCTTTTGATCATCAAAGAAAAAAGGGGGGTTCGGGGGCATCGTCCCCGAACGGGCATGGGCGGTAGCCCATCATTGCTTCTCAACTGTCTTGTCCTGAGAAGAACGACGCCAGCGTCAGCCGTGCGAATGGCTGGACAGACCGTAAACGCGCTCGGGACCGCCACGCGGGACATCTCCGAAGGTCATGGTGACCACCGTCCCCACCGGATGCAGGCCACACGCCAGCAGAAAGCGCCGCAGCGGCCCGTCTTCCAGACGGGTATCAAAGCGGACGAACTCACCGACAAAGCGGTCCAGCAGCGGGGCAATCAGGCTGATGGCATCGTCTTCGCTGCGGGCAATCACCGGGCCGATCACCTGCCCGCGACCAAAC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 626646-626413 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000001.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 626645 36 100.0 30 .................................... TGTCTGCTTTCCACGCCGCCGCAATTCCCC 626579 36 100.0 30 .................................... CGAGTGGGAACACCCGAGCACAGCGGCGAT 626513 36 100.0 30 .................................... TACCGGAGCAAGTGCCCAGCCACCTCGAAT 626447 35 94.4 0 ..........................A.-....... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTGTTGAGCACCCCCAAATGAAGGGGGACTACACC # Left flank : CGCAGAAGAAAATGGCATGATCAGTAAAGTGCTTGGAGACAAGGCACGTCGACAGATCAGAAACGACTTCGCCCATTTCAACATGCTGCAACAGGGCAAGAAGACCATCAACCTGACCGACGAAATCAACAACGCCCGCAAACTGATGGCCCATGACCGCAAGCTGAAAAATGCCATCACCCGATCGGTCACCACCCTGTTGCAACAGGATGGTCTGGATATCGTCTGGACCATGGACGCCAGCCACAGGCTGACAGACGCAAAAATCGACAGCCGGAACGCCATCCATCTACACAAGACCCACAACAGAGCCAACATCCGCGAACCCCTGCACGGAAAGAGCTATTGCCGCTGGGTCGCGGCCCTGTTCGGAGCCACCTCCACCCCGTCCGCCACGAAAAAAAGCGACAAAATCCGGTGACATTTTCCCCGTTTTCCGCTGGATTTTTCGCGACGAAAACGCACTTTTCCCTTTCCTTTCATCGCCATCCGGGCTATCG # Right flank : AGCCGTAGCCGGGTTGTTGCCCCCTCCAATGCCCCACCCCGCTACCGGCGCAAATGATCCAGCAACACCTGAAACGCCGGTGTCGGCTGGCGGCGGCTGGGGTAATACAGGTAATAGCCGTCAAACGGCGGGCTCCAGTCAGCAAGAACGCTTTCCAGACGCCCGGCGTCGCAGTGGGCGGCGGTGGTGTCGGCCATCAGATAGCCCAGCCCGAACCCGGCCAGACAGGCATCGAGAATCACGCTGCTGCTGTTGAAGGTCAGTTGACCATCCACCCGCACCCGCAGCGGATGGCCGTCCTTTTCAAATTCCCACACATACAGCCCGCCCGAAGTCTGGAGCCGCATGTTGATGCAGCGGTGGCTGGTCAAATCGTGCGGCACCACTGGCTTGGGATGGCGGGCAAAATAGGACGGAGCGCCAACCACCAACAGCCGCATGGCCGGGCTGATCGGCACGGCGATCATGTCCTGTTCCAGACTTTCCCCCAGCCGCACCCC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTGAGCACCCCCAAATGAAGGGGGACTACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.60,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 827580-827080 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000001.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 827579 36 100.0 30 .................................... GGTTCGTCAATGCACAACTACGGCCTAGCT 827513 36 100.0 30 .................................... AAACGGAATGCGCCTGAGAGCAAAAATACA 827447 36 100.0 30 .................................... AGTAATCAAATCGACCGTTTCAAGACCAGT 827381 36 100.0 30 .................................... CGGCGATGCGCGCTGGAAGGGTTCCTTCCT 827315 36 100.0 32 .................................... ATGAGCAACGGTAGTTTGGGGGTGGTGGGGCG 827247 36 100.0 30 .................................... AAGCACATACACATCATAAGGACCACGGAA 827181 36 100.0 30 .................................... TGGGAATGTTCTGGATCGGTACGCAAAAAT 827115 36 86.1 0 ...............................AACCT | ========== ====== ====== ====== ==================================== ================================ ================== 8 36 98.3 30 ATCTTAGCTGTTCAGAAAATGCGGTCAACCCGCAAC # Left flank : TTTTGCGAAAACCGGTTCCCACTTTTCGCACAATGCTCGCGTCATTCCGGCGGTGTCACTCTCGACCGAGGTGCCCTGATGCGGGTGCGCGAGACTGGCCCTTGGGCAAGCGGGTATCGTCTGTTGTGGATGCTGGTCATGTTTGATCTGCCGGTGGTCGAGGCTGAGGAACGCCATCAGGCAACAAAATTTCGCCACGTTCTGCTGGACCATGGTTTTGCCATGGCCCAGTATTCCGTCTATTATCGCATTCTGGCCGGGAAAGAGGCCGCCGAGGCAATGACCAAGCATATTGCCGCCGCCGCTCCGCCCAAAGGGCATATCCAGATTGTGACCTTGACGGACAAACAGTATGCCAACATCGTCAGCCTGCGGGGGCGTGAATACGAGCCTTCGCCAGAAAACGAGCAACTTTCGCTGTTTTGATGGGCTGATTCTATCGGTTTTTCTCGCAGAAAAAAGCCTGTATCCCATATGGATCAATGGGGTACAGGCTCTCT # Right flank : GCACCGCCAAAGGAACGGGGTCCGGGGCCGACTGGCCCCGGCGAGGTGTGGAGCAGCGCTCCACGACCCTGTTTTTTGTTCCCCACCTCCTCGACAGGCAACAAAAAAGCCGTCTATCTCCTTGAGACAGACGGCTTTTTATGGCGGAGGGGGTGGGATTCGAACCCACGGTAGGCTTCCACCTACGGCGGTTTTCAAGACCGCTGCCTTAAACCACTCGACCACCCCTCCGCAGTTGGGGCGCCGAAGCGCCCCTTATGTATCGAGTTCTTGCCCCGCCGTCCAGTATTTTATGCAGCCCGGCGACGGCTGACCAACACAATCCCCAGCACAATCAGCACCATGGCGATGCCCAGCCCGGCGGGGGGAACTTCGCCGAGGACCAGAACGGCGATGGTTGAGCCGACGATGGCGGCAACCCAGCCGATCTGGCTGAGGGCGACCGGGCCACCCAGCTTTTGCAGGTAAAAGAACACCGCATAGGTGATGGCCAGAATGGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTAGCTGTTCAGAAAATGCGGTCAACCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 109203-108076 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000004.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109202 28 100.0 33 ............................ CTCGATCCAGACCGAGCTAAAGGGTGCTGTCTC 109141 28 100.0 33 ............................ TGTCTGCACCGCCGCCTTGGTGGTGGCAGGGGT 109080 28 100.0 33 ............................ CAGGAATTGACGCCTCCAGCTCTGATACGGCAC 109019 28 100.0 33 ............................ CCGGTGTTGCGCAAGTGCGGTTCGATGGGGCCG 108958 28 100.0 33 ............................ CCTCGTTCCGGTCGGCACCGATCTTTACACCGA 108897 28 100.0 33 ............................ CCGTCGAGAGCAAAGCCGCGCTTGGTTTGTGCG 108836 28 100.0 33 ............................ CGTGCCGTCTCTCGGTCGGCGGGTGGTGATCCA 108775 28 100.0 33 ............................ CATTTTTCAGGCATCTTTCCCCAAGATGGCAGA 108714 28 100.0 33 ............................ CAAGCGTGGGAGGAGGACGTGATGGACATCGAA 108653 28 100.0 33 ............................ TAGTCAAAGCCCAGACGATAAAGTTGATGGGCG 108592 28 100.0 33 ............................ CGGTACGGGCAGTGATGGAGCGGTCAGATTACA 108531 28 100.0 33 ............................ CGGCTTGGCGGGAGCAAAGCGCCCTGGAGAGGG 108470 28 100.0 33 ............................ CCGCCCGCTTGATGCCCTCGCCCCACTGATCAA 108409 28 100.0 33 ............................ TCGCCGCAATGATCTTTTCCATCTTCTTGTCTT 108348 28 100.0 33 ............................ TAGCCCGAGAGGTAGGAGGGGGCCTCCGCGACA 108287 28 100.0 33 ............................ TGTTGCGTTGGATCAGCGCAATCAGTTCCTCTT 108226 28 100.0 33 ............................ TATCCTCGACATCGGCCCCGCCCCGATCATCAC 108165 28 96.4 33 ...........................T TCCTGTAAGCCAGTCACGGCATCCTCGACCTTG G [108142] 108103 28 75.0 0 .C.....T.T........CA..C..G.. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.5 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CGTTCCGCGAACGTGCTGTGGAAATGGACCTGCTGGCTGTTGTTTCCCGTGACATCACAACCTTGCTGTGGCTGGACAATGCTCGTCGTCGTCGCAAATAACCTGCCGCCAGCCGTGCGGGGGCGTATGAAGCTGTGGTTCATTGAACCTCGGGCCAATGTGTTTGTGTCGGGTGTCAAAGATGCCGTGGCACTGGAAATTCTGGACGATTTGTTCCGACATTGTCCACCAGAAGCAGGACTTCTGTGTTTCCGCTCCTTGCCGAAACCTCCGGGTTACGAAATTCGGACTTGGGGGGCGACCAGCAAGGATGTAACCCGACTGTCAGGGTTGCAGTTGGTCGTTGAAACAATATCTATCGACATTCTGCGGTGATGTGAGAAAAGCTGTCTCAGTTTTGCGATACTTTCGCCGTTTTATCCCCAGAAATGCAAAACCCTTGAATACCGGAAAACACAAAATATAGATTGACGTTCGTTGTTCTGACACATTTTATAGGT # Right flank : TTTTTCTGCTCAGTTTTTTCATAACCCCACCCCCATCCCCTGCTCAGACCCACGCCCCTTTTGCTGCCCGGCTACCTTGCCAGCCCGGCCAGCGATAACCGCCTTCACCCCATCCATTGCCCCGCTCAAGGCTTTGGCCTTTGGCTCGGCGAGCTGGATGTCGGCTTTGGCCGGGACGTGGTGCAGGGTCTGTTTCAGGTCGCGCAGTGTGTACTTGCTGCCGCTGGTCAGAATCACGGCAGTGCTGGCGCGGTCCTCGGGCCTGAGCGTTTTCCAGTGCTCGGCGGCGGTGTGCAGGTCGTAGGCCACCACCACCGTCTTTGCCGTCCGGACGTCACCCAAAACCGCCAACATCGGCCTCTGGCCCTGCACGCGAAAATGGCCGATGCCGGTCATCAGGTTGAAGCCCTTCACCTCTCCCTTGCCGTCCCGCGTTGGCACGATGACGGCGGCGGCGCGGTCGCCGGTGGTGGACAGGTTGGCCAGCCGGATGTGCTCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 462970-462677 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOA01000004.1 Insolitispirillum peregrinum strain DSM 11589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 462969 31 100.0 34 ............................... GCACATGGCTTTGAGGCTGGGCGATGTGTTGGTT 462904 31 100.0 35 ............................... CCTGACAATGAACCAAAAATCAAGGTCATGGGTCT 462838 31 100.0 35 ............................... GCCCCGACCTGAGGGGCGAAGATCGCCCCGTCGAA 462772 31 100.0 34 ............................... ACATCCCCGAAGTCCCGAAGCGCCCGGATTCGGA 462707 31 87.1 0 ..........C..........A...C...C. | ========== ====== ====== ====== =============================== =================================== ================== 5 31 97.4 35 GTCGCCCCCTTACGGGGGCGTGGATTGAAAC # Left flank : GTGGCGGTTGATGTGCCCTATGCCGAGGATCAGGCGCGCACCATCGCCGACCTGCTGGCGCGCGCCGACGAGGCCCTGTACCGCGCCAAGAATGGCGGGCGCAATCAGGTGGTGGTGAGTTAAGGGGAGCACCGGGGTTCGCGTGGGAGGTGCGCCGGGCTGCTGCCCGGACCTGCTTGGGGACCCCGCCGGGCTGCTGCCCGGACCTGCTTGGGGACCAATGTCCTCAAACCCCTCTTTTTTCTTTTCAGGATGATGTGTGTAACGGATGGCTGTCGCTGTGAAGTGATGCCATGCCATGGAGTGTGCTGTCATATCTGCTTGCGCGAACCGCAAGCGTGTCGGAAATCCCCGGGAGGTTCGCGCTCGGTTATCTTATTGAAAAGAAACGGTTTTGATTTTCGTGTTGTATGCCTACATATGTTTCTCGGGAAATTTCGGAGAGGTTCGCGCAACAGGGGGCTTTTCCTGAGCAAAGACAGTCTGTTATAGTGGGTGCC # Right flank : CTCTGATGCGATGACCCATGCCGCTCCCGATCCCCCCTTTCCCCCAAAACGGGGGTCTGGGGCCTCCAGGCCCCAGCGGGGGGCGGGGCAGGGCCCCGCGACCCTTCCCACCAGAGTCCCTCAGAAAAAGAAAAACCGCCCTTTCCACACCCGGGAGAGAACACTGGTGCAGAAAGGGCGGTGGATCGGCCCGCCCGAGGCAAGGGGGGGGAGGCGGACGGGCCGGGACAGCCTCACCGGGAGAGATCCCCCCGGTGAGCAAGCGGCTGGGATCAGGCCGCGGCTGTGGCGTCGACCGGCACCTGACGGATCAGGTAGTCAAAGGCGGACAGGGCGGCCTTGGCCCCTTCGCCCATGGCAATGACAATCTGCTTGTAGGGCACGGTGGTGGCATCACCGGCAGCGAACACACCGGGGACCGAGGTTTCGCCACGGGCGTTGACCTCGATTTCACCGCGCGGGCTGAGGGCGATGGTGTCCTTCAGCCATTCGGTGTTCGG # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //