Array 1 429264-429720 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CABWVV010000002.1 Klebsiella pneumoniae strain ZKP142 isolate ZKP142, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================== ==================
429264 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC
429325 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT
429386 28 100.0 34 ............................ TGATCGTGCAGAGTCACAACCTGACGGGATTATC
429448 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT
429509 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT
429570 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [429575]
429632 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT
429693 28 89.3 0 ............T......A.......T |
========== ====== ====== ====== ============================ ================================== ==================
8 28 96.9 33 GTCTTCCCCACACGCGTGGGGGTGTTTC
# Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT
# Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG
# Questionable array : NO Score: 6.09
# Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC
# Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.28,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 438474-440148 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CABWVV010000002.1 Klebsiella pneumoniae strain ZKP142 isolate ZKP142, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
438474 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC
438535 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT
438596 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC
438657 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT
438718 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA
438779 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC
438840 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA
438901 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA
438962 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG
439023 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA
439084 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA
439145 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT
439206 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT
439267 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG
439328 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC
439389 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG
439450 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG
439511 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC
439572 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC
439633 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG
439694 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG
439755 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC
439816 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC
439877 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG
439938 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC
439999 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT
440060 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT
440121 28 100.0 0 ............................ |
========== ====== ====== ====== ============================ ================================= ==================
28 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC
# Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.14,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//