Array 1 685278-684432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015105.1 Thermococcus thioreducens strain OGL-20P chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 685277 30 100.0 37 .............................. TCAAGTCTTTGTATGGTATACCATTGAAATGATAACT 685210 30 100.0 36 .............................. TAGAATTCTCGTTAGACCACCGATGAGCAGAAAAGC 685144 30 100.0 36 .............................. GAACCCCACAATCGTCACAGTAACCTCGAACGTGAA 685078 30 100.0 36 .............................. TCAACCACTCTCGGCATTCTTCAAGGTTCATGTTCC 685012 30 100.0 37 .............................. TTTTCACTAGACCCAAGTGCATGAGCCTAGCCACCGC 684945 30 100.0 39 .............................. CAGGTGCTATTAGCGGTTTCTTTTCAATCATGCGCTCCC 684876 30 100.0 38 .............................. ATAACCACGCCGGTTTATGCACTTTAGCGGTGATTGCT 684808 30 100.0 42 .............................. TATTTTAGGTTCTCGTACAAACTTCAAAAACCCCAAATTCAG 684736 30 100.0 36 .............................. GTAGAATCAGCGCGACAACTCCCGAGACATGCGGCG 684670 30 100.0 37 .............................. ACTATCGTCGGCCGCGTGGTTGAGAAAAAGGCTGTTC 684603 30 96.7 36 .............................C GCCGAGGAGCTGTAACGGGCTGGGTTCGATGCCCCA 684537 30 83.3 46 ...G...............G.....CCT.. GTGTTTCATGCGTTTAAGTTCGAGGGGGTGGGGGACGGAACGTCCC 684461 30 86.7 0 CCCG.......................... | ========== ====== ====== ====== ============================== ============================================== ================== 13 30 97.4 38 GTTCCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AATCGGAGCTCAGAAATTTAACGGTTTCGGCTCTATCACGCCCAGGTTTTTCCAATTGGGTTTATCGTTCTCATCTGCTTGTTTGACTCAAAAAGCTCCCCTCAGATGGCCCAAGAAACCAAATTTTTGTTCCCTAATTATTGCCACTTTTTGTTCCATTTCTCCCATCATACTGTAACGAAATTTTTTCGAGATGTCTGGTTGAGGAAGTACTGGATCCATTAAGGCTTGAACCCTGCTAAAACTGTTTATTCTCCTATTTAATATCTGCTAAATATCGCGTTGAGGCTTTAAGGCCCCCTGGACATTCGGGAGATCCCTTGAACCTTTTTGTTCATGGCATCTTTGGAGTCCCCTCAAGGGTTTTTGCCAATATTTTCCCCGGCAAAATCTCGAATTTTGAGCCTTCTCATGACTCCCTTTCCAGCGGTTTCCAGAAAGACTTAAATATTGGGAGTGTTTTAGAGGCTTATTGGGCAAATGGGAGGAAATTCCAGCCT # Right flank : TTGAGAAGCCCGGCAGGGAGGGTCATCTGAGCAGCATACCAAAGGAGCGCTCGAAGATCTCGCCGTGGCCGCCAAAGGCCTCGAACATCCGCTCCGAGTACGCTGATGAGGCGACCCTGAGGAACTCCCGCAGGTTCGTCTGTATCTCGTCGGTCATGGGGACGTGGAGGGGCATAGGTTCGTAGTAGTCGAGGCCCTTCATGAGACCCGTTGAGAAGTACCAGAGCGTTTTTCTGACTTTCCTCCCCTTCACCACCGAGAAACTTGCACCCGAGCAGTGAAAGGCCGCGTGAAGCACGATTATTTTTTCTATCTCAACGCCCTTCCTGAGGAGCCTCTTCCGCTCTGAATCGCCCGAAAGATCCGTTATCCTGTAGCCGCTCCTCGTCTGGGTGTCGTGAGGGATCCGCAGGTGGTGAACAATCTCAACCTTAGGGTCATAGACTAGGACATCGGTTCCCCCCACTACAAAAAGCTTTCCGTCCCGGACCTCTATAACG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 1557223-1555442 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015105.1 Thermococcus thioreducens strain OGL-20P chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1557222 30 100.0 37 .............................. TTATGTCCCACGTCACTGGAGCTGTAGCGGTGTTGAG 1557155 30 100.0 37 .............................. AAGACAAACACTGGAAACCAGAGCGCAAACCTCGCTC 1557088 30 100.0 36 .............................. GAACCTCCCCACGTCCTCGGTGCTGATGCTAACACT 1557022 30 100.0 36 .............................. CCGAAAACTTTTTAAGGAGAAGTGCGCTAACGGAGG 1556956 30 100.0 38 .............................. GTAATTACAAAAAGCCTTTTCCATCTACCTTTTTCAGT 1556888 30 100.0 36 .............................. ACAAAATCAAGGGCGACGTTATAGAAGCCCTCCACA 1556822 30 100.0 37 .............................. TTTAGGTGTCCCCGGTGCGGTTCCCTCCTTGATGTGG 1556755 30 100.0 36 .............................. ACAGCGTCACGTCTATTTTGCCGTTCAGCTCCTCGA 1556689 30 100.0 39 .............................. CTGGTGGCGGTTCTGGGAAGGCTATATAAGGTAGTTTAC 1556620 30 100.0 38 .............................. TTAACTTTCAGCTTCAATAAAACACCCATAGCAAATTT 1556552 30 100.0 36 .............................. TGATGAGCGCCATTAAAGTCCTTCTCCGTGTCTCTG 1556486 30 100.0 36 .............................. TTCTACTGGATTTAGCCCCTGTTCAGTGACTGAACT 1556420 30 100.0 35 .............................. TCGGCTGGGAGAGAATGAACGAGGAACAGCGGCTG 1556355 30 100.0 40 .............................. ATAAGGAGATACTTAACGGCAGGTATGACGTGTTGCTCGA 1556285 30 100.0 37 .............................. TTCCGAACGAGGTTAAAATCGCCTACTTCCTCGACAG 1556218 30 100.0 36 .............................. AGGTTAAAAAACAACTCCAGATAATGGCAGAGAAAA 1556152 30 100.0 37 .............................. ATGGTCAGGAGGAGAAAGACTAAGGTTAGGAGAAAGG 1556085 30 100.0 38 .............................. TGTAGCTCTTCTATCGCTTCTTCGATTTTCTCAAGCTT 1556017 30 100.0 37 .............................. AGACCTTGGCGATAAGAAGAGCATCCCTGCCCTTCGG 1555950 30 100.0 37 .............................. TTAGATCGGCTGGCGAAAGCTCTTCGCTGTAAAAGTG 1555883 30 100.0 37 .............................. AAACACTAACAAGCTCGACACTTTCTCCGCCAGCCAT 1555816 30 100.0 37 .............................. CCTTCACCAAACACAAGCTTTGTGTATTCTTTTCCAT 1555749 30 100.0 37 .............................. CGGCGAATGTTGAAATCATGAGCCGTCTAATCGTCGC 1555682 30 100.0 37 .............................. GCTTTGGGTGGTCTGTATAGTCCTCAGCAGGATAGTT 1555615 30 100.0 38 .............................. TGCCTTAGTAGCATGGGCTGGGGCGAAAACCTAGGTGA 1555547 30 86.7 46 ...................G.....CCT.. GTGTTTCATGCGTTTAAGTTCGAGGGGGTGGGGGACGGAACGTCCC 1555471 30 90.0 0 CCC........................... | ========== ====== ====== ====== ============================== ============================================== ================== 27 30 99.1 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTCTGGAGGCTGAGGGAGCTTGGATTTGACGTTCTATCACGCTGAGAGAATTTATTTTTCGGATATCTCTCCTCAGAGGGAGCAATTTCTAAAACTCCGCAGGTGAGCCTCTCGGGAAATCACTTTTTATGGTTCCGAGGGTATAACTTATTGTCGCTATTTTAAGCATTGATTGTAACGAAATTTCTTCGAGAATCATGACAGGGGAGGAGCAGGGCTCGAAAACGCCGGCAACTTGTCAAAACTGGATATTTTGGATTTTAAAATATTAATATCGCCGTTTTCGGCGTTTGGACGTATCACGGTGCTCGGGAAATCACATGGACTTTTCTGTTCACTGAACGTTTGCAGTCTCTTGGACTCCCATTTAACCCTTCCGAGCTCTCTGGCCTCACCGTTTCAGGCATTATGAGAGTCCCTTTTCTATCGGTTTCCAGAAAGGCTTAAATATTGGGGGTGTTTTAGAGGCTTATTGGGCAAATGGGAGGAAATTCCAGCCT # Right flank : CAAACTTACAATAACTCCCCGAACAGCAGGTCTTCCTTTTTTCCTCCCGCCTTCTTGAAAACCCTCTCGCTCCAGGAGACGCTCCCAACGCCCCTTGGCCTGTGGGCATCGCTCGCGAAGGCCAGCTTTACGCCGCGCTTTATGCACTCCCTTATGAAGTCAGTGTCGGGAACACGGTAGCGGGAGCTTATCTCGAAGGCCTTTCCGTTGGCCTCTGCCAGATCGAGAACCTCCTCCAGCTCCTCCATTGATGGATACCCTATGTGGGGAAAGTTTGCACCGAAGTGCCCTATGACCGTCACGTTCTCATCGAGAAGGGCCAGCTTCACAAGCCCGATGTACTGGCTCGGGCTCTCCAGCCACTCGTGGACGCTGGCTATCACGTAGTCGAGCTTTTTCGCCATGACGTCCGGAACATCGACTCCTCCGGATGTTATGTTGCCCTCAACCCCTGCCAGCACCGTTATATCCGTCTCCCCTCCCCACCGCTTTATCTCCCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //