Array 1 166737-166045 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJR01000007.1 Escherichia sp. E13S3 13S3_7_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 166736 28 100.0 32 ............................ CGCAAACGCACGCGGAACAACGCGGCATCCTT 166676 28 100.0 33 ............................ TACCGAAGCAGGGGCCAGAAGGAGGAAAGGGTC 166615 28 100.0 32 ............................ GGAGCTGGTCGCACGAGCCGTTAGCACTAAAT 166555 28 100.0 32 ............................ GATGTCCGGATCGGGCCATCATTTCAACGTGA 166495 28 100.0 32 ............................ GTTACGGCGGGTGCTTGTGGGTATTGTTTAGT 166435 28 100.0 33 ............................ ACGACGTTAAACTGGTTACGGATACGCGGGCGA 166374 28 100.0 33 ............................ CACAGTAGTTAAAGAGCCTCGGCGAACAATCCA 166313 28 100.0 32 ............................ GTCGAAGAACTGGCAACAATACGCGCGGAAGC 166253 28 100.0 32 ............................ CGATAAACAAGCCGGATAGTAACGTAGTGGTA 166193 28 92.9 33 ............GT.............. TTCCGTTGATTACCAAAACGTTGACGGCTTTAT 166132 28 92.9 32 ..........A.G............... TTTCTCGCTCGCCATAAGCGCGGGTAGTGGTG 166072 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAGAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCATAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTTAACACACCATCCTCCAGTATTTATTCCCCTTGACCCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 181020-180691 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJR01000007.1 Escherichia sp. E13S3 13S3_7_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 181019 28 100.0 32 ............................ AGATGGCGTCCACGCGCACTTTTGCCAGCATT 180959 28 100.0 32 ............................ GCGCTGGCACTGTAACCCTGCTTCTGGAGTGA 180899 28 100.0 32 ............................ GCCTGGCTTGCTCTGCTTTACGCTGAATGAGC 180839 28 100.0 32 ............................ TGGCCCATTGAGTTACACCCTCCTGAGATATT 180779 28 100.0 32 ............................ TGTTGAGCAATGTAATCGGGGTCAGATGCATC 180719 28 92.9 0 ....................T...C... | C [180696] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTAGATGGTGGCCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAGGAAGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCTGCAACACGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTATCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGAATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 248119-249002 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJR01000002.1 Escherichia sp. E13S3 13S3_2_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248119 29 93.1 32 ............C..............T. CTATCGACTGAACGAACTGGCAACCAATCTGG 248180 29 93.1 32 ............C..............T. GCACCGACGCGGCGAACAAATCAGCCGAAACG 248241 29 93.1 32 ............C..............T. TGGTTATCCCTGCCCGCCAGGGCATAAATAAA 248302 29 96.6 32 ............C................ AAAAAAACTCGGTCACGTTGACGTCAGCTCAA 248363 29 96.6 32 ............C................ CAGCTTCACGCAGAAAATATTCTGGCTGATGA 248424 29 96.6 32 ............C................ ATTCCGCGCCTGTTTCAAGATGCGCGCCTTTA 248485 29 96.6 33 ............C................ TGGATTTGCAGACACTGTGAGTAGTATTGCTGC 248547 29 100.0 32 ............................. GGAAAGACCCGGTTAGTAGCGTCGGGGTGAGG 248608 29 100.0 32 ............................. CGCCTCGCTAATTCAATGGGCGGCCTGGTGGG 248669 29 100.0 32 ............................. AAACAACGAGGAATGCCAAGTTCCGGGCGTCA 248730 29 100.0 32 ............................. TGGGTCATGCCGGTGATTGCCTGCCCGTCGTG 248791 29 96.6 32 ............C................ GCAACTGAATCCAGCAAATCATTTTTAGGGTT 248852 29 93.1 32 ............C...............C GTGTTTTCTTTGTTGCGGTAGGCAATATCGCC 248913 29 100.0 32 ............................. CCAGTCGAAGATCTGGACGCGTGGGGAAAAGC 248974 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGAGCGTGGGTTGGCTCCATAGTGAACAAGAGTGTATTGCGCGTATCGAATCGGCGGTAAGTCAGGGGAAATGCATCGCCTGGATCCGGAATTCTGTCGATGACGCTATTAAGGTTTATCGTCAGTTACTTGCCAGTGGCGTCATTCCTGCTTCCAGCCTTTCACTTTTTCATAGCCGCTTTGCTTTTAGCGATCGCCAGCGAATTGAAACGGAAACGCTCGCGCGCTTTGGTAAAGAGGGCTGCTCACAACGCGCCGGAAAAGTACTCATCTGTACCCAGGTATTAGAGCAGAGTGTCGATTGCGACCTGGACGAAATGATCTCCGACCTGGCCCCTGTTGATTTGCTGATTCAGCGAGCGGGGCGATTACAGCGGCATATTCGCGATATTAATGGTCAGTTAAAGCGTGATGGAAAAGACGAGCGTTCCCCTCCTGAATTGCTGATTCTGGCACCCGTCTGGGACGACTCTCCGGGTGACGAATGGTTTGGCAGTG # Right flank : GCGCTCCGCGCATAGTTTGCGCACCGCGCTGAAGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAACCCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCTATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCTGCAGGGAATGCGGCTGTTTTTGCTCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTGGCGGCAATTCCATGACTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAAC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //