Array 1 64086-62738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTMP01000027.1 Pseudomonas aeruginosa strain AZPAE15057 AZPAE15057_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64085 28 100.0 32 ............................ ACGAAAGCAAAAAAGAATTCCCGGGCTGTGTA 64025 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 63965 28 100.0 32 ............................ TCGGAGAGGTTCGTCAGTTCGTAGAAGCCGGT 63905 28 100.0 32 ............................ TCCCAGTAGTCCCGCGTGGTGAACTTCACTCC 63845 28 100.0 32 ............................ TGCTGCCGTCCCCGATCCACAGCCTGCGCGGC 63785 28 100.0 32 ............................ GCCGAAACGCTCGTGCAATTCGTCAGCGATTC 63725 28 100.0 32 ............................ GGCACACGAACGGATCGTTGTCGCTCGGAATG 63665 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 63605 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 63545 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 63485 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 63425 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 63365 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 63305 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 63245 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 63185 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 63125 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 63065 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 63005 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 62945 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 62885 28 100.0 32 ............................ TGCGCCCTAAATCAGTGATCCGGCGAATTTGG 62825 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 62765 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 100-1269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTMP01000042.1 Pseudomonas aeruginosa strain AZPAE15057 AZPAE15057_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 100 28 100.0 32 ............................ TTGTAGAGAGTCGACGCGCCCTTCAGCATGTA 160 28 100.0 32 ............................ AGCATGACCAGCGCCAAGCGCTTACGGTGATA 220 28 100.0 32 ............................ AAGTGCCGCCGCGATCAGCGCGGGGTCGCCAT 280 28 100.0 32 ............................ TTGCTCAAGGCTTGGAACACTGGCCACCCCGG 340 28 100.0 32 ............................ CTGAAAATGGCGCAGGAAACCGAGGTGGCCAT 400 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 460 28 100.0 32 ............................ TTGTCGGCCACGCGCAGGTTCTCCACGACGTT 520 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 580 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 640 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 701 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 761 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 821 28 100.0 32 ............................ TCCCTGCACCGGAGTGGTATCGAGCAGCCAAT 881 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 941 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 1001 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 1061 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 1121 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 1182 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 1242 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 33 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GATGGGTTGACCACTACAAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10601-9793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTMP01000042.1 Pseudomonas aeruginosa strain AZPAE15057 AZPAE15057_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10600 28 100.0 32 ............................ TCGCATTGCGCCTGCGTCATGATGCCCGACTC 10540 28 100.0 32 ............................ AGTACCAGCGATCTGCGAAACCGGACAACTCG 10480 28 100.0 32 ............................ GAGGAGCACGGGACGATAACAAGCGCAAAGGG 10420 28 100.0 32 ............................ TGGTGCAGATGGCCGCCGCGCGGGTACACGTT 10360 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 10300 28 100.0 32 ............................ TCATAGGGCTGCGGCAGGTTGACCACGTCGCT 10240 28 100.0 32 ............................ ACACCCTAGGCTTCGCATAATGTGCAGACGTT 10180 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 10120 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 10060 28 100.0 32 ............................ TCTGGCGAAGAGCGGGATGACAAGGGCAGAGC 10000 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 9940 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 9880 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9820 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //