Array 1 1208-2827 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZZU01000021.1 Neisseria meningitidis strain Neisseria meningitidis isolate R448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1208 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 1274 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 1340 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 1406 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1472 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1538 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1604 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1670 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 1736 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1802 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1868 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1934 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 2000 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 2066 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 2132 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2198 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2264 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2330 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 2396 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 2462 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 2528 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 2594 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 2660 36 100.0 30 .................................... CAGCTGGTTAGAGCACACGCTTGATAAGCG 2726 36 100.0 30 .................................... GCCTGCGCTGCGGAAGAGAAGAGAAGAGAA 2792 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //