Array 1 105132-106749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNZ010000040.1 Helicobacter pullorum isolate MGYG-HGUT-01312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 105132 36 100.0 30 .................................... CTAATCAACATTTAACTATGCAAGAAATTG 105198 36 100.0 30 .................................... CGTGGCATTTTAAACATTTCTGAAGTTCTT 105264 36 100.0 30 .................................... GGCGATATTCACATTAATAACGTCGTTCGT 105330 36 100.0 30 .................................... CCGTTACCTCTGAATATCCTTCTGGTTCCG 105396 36 100.0 30 .................................... TTCTAAATATCCTTCTGGTTCCGAACAATT 105462 36 100.0 30 .................................... TTATGTTCGATTAGATCCATTTGGTTATAC 105528 36 100.0 30 .................................... TAGCGGAGATATCTCCAACCCCGTTAAATA 105594 36 100.0 30 .................................... TCTAGAGCAATGAATTCTATTGGTCAAGCT 105660 36 100.0 30 .................................... AATTAAGTCGCTTTTTGATAATGTTCTTGC 105726 36 100.0 30 .................................... AGAATTATGAAGCACAAAAGGAATTTGCTC 105792 36 100.0 30 .................................... CGTTTTCGCATTGGTTTAAAAAATTTTATC 105858 36 100.0 30 .................................... GGAATTCAATTTAGGACGCGAAAGCCCCCA 105924 36 100.0 30 .................................... AATCAACTCTTATATAGACTTATTCCAACA 105990 36 100.0 30 .................................... GATGTTGCCTTTGTTAAATTCAATGCCATT 106056 36 100.0 30 .................................... GAAAAGAAGTAAATTTAATTTAACACATAC 106122 36 100.0 30 .................................... GTTTCCGTTCGAGATTTAAGAGCTTCTAGT 106188 36 100.0 30 .................................... GTTTACAGACATTTTGTCAACTGTCCTATT 106254 36 100.0 30 .................................... TCTCCTGATCTATCATACGCACGTCTAAGA 106320 36 100.0 30 .................................... CCGTTACCTCTGAATATCCTTCTGGTTCCG 106386 36 100.0 30 .................................... TTCTAAATATCCTTCTGGTTCCGAACAATT 106452 36 100.0 30 .................................... TTATGTTCGATTAGATCCATTTGGTTATAC 106518 36 100.0 30 .................................... TAACTCTCTGCATTTTTAAGCATATCCCAA 106584 36 100.0 30 .................................... GAGCGCGAGTTCTTGAAACGTTCTCGCTTG 106650 36 94.4 30 .....................T....A......... TGGGGAAGCTTCTCCCTTTAGGCTTTGATG 106716 34 80.6 0 .....................-...TA-..CG..G. | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.0 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGGGGGAGTATCCGCTGTCTTATCATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTGCTTTTTGGATTTGATGAGAAAAAGGGAGAGTATGTGTATGCGGATAATGATAAAGATAGCGATGAAGAGAAGTTATTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGCGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTATTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : CTTCAAACCATTACTTTATTGTTTTTGATATAATTTAGGTTTTTTAAAATATTTTAAATGATGCAGTTTTTGATTGCTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTGCGATAAGCTAATGTGCGGTGAAAAATTAATAGAGTTTTAGATTGTCTTATTTTTTGGGGTTTTTCGTAATTTAGACTAAAAAAGCAAGGATAACACACTACAAGATTCAAACATATTTTTTAAGATTTGAAGGAAAAATCATGGTATATACTACTTTTTACCAAAGTCCTATTGGTACAATACTTTTAGCAAGCAAAGATAATAAGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAAGGAATCTACACAAGAAAAAGGTGACGAACCTATCTTATTACAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTAGACTTGGCACCTAATGGAAGTGTATTTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 163638-164470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKNZ010000043.1 Helicobacter pullorum isolate MGYG-HGUT-01312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 163638 36 100.0 34 .................................... ATCATGGGAAACCTCCATTGAATTGAAATCTAAT 163708 36 100.0 38 .................................... TCTAAATCCTTAAGTTGGTATAAATTACCACTAGGGTC 163782 36 97.2 40 ......................G............. TCTAAATCCTTAAGTTGGTAGAGGTTACCCTCTAGGTCTT 163858 36 97.2 38 ......................G............. ATTTCTTTATCCACACCTGTAACACGCCCACAATATTG 163932 36 100.0 37 .................................... AATGGGCTTGTCTCAACGATTTCGCCGTAAATCATTC 164005 36 97.2 37 ......................G............. TCAAATCTGAGACAATAGACAGCGACTACAACCGCGG 164078 36 97.2 34 ......................G............. TCCCTCACTATTCAACTGCTTACGCATTTCAATA 164148 36 97.2 37 ......................G............. CGGAATTTATTATGAAAAATCTCATTCACTACTTCCC 164221 36 100.0 32 .................................... CCATATGCTATCACCATATCTATGGGTTAATA 164289 36 100.0 36 .................................... TTTAGATAGTTCCTTTCTCTCTTTCCGCGTTGCTTC 164361 36 97.2 37 .....................T.............. ATTTGTACCGTGAAGATAGGCTCTTTGAACCTACTAT 164434 36 72.2 0 ............A...TAT.....AA..T....TTT | C [164464] ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 96.3 36 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCAATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCACACAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCACGAAGTTAAACGAGCCTCGTTGTCTCCAGCT # Right flank : TTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCACAAAATGTATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTTATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTTCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAAACTAGAAAATCTCGATAAATCTCTTTTG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //