Array 1 2074-2640 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000083.1 Gilliamella apis strain A-4-12 NODE_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2074 28 100.0 32 ............................ TGAAAAGTTAAATTTAGTGGAGTATTTGATAC 2134 28 100.0 32 ............................ AGTTAAATAGAATTCTAAACCTGCAAGACTTG 2194 28 100.0 32 ............................ AGAGTTTTTAAAACAAGTTTTTGATGCACGAA 2254 28 100.0 32 ............................ TCTTCAGGCGTTTTTTCTTTATTTTTGCTGAT 2314 28 100.0 32 ............................ CGAAAGGGCTTTTTAGGTGACATATGAAACAA 2374 28 100.0 32 ............................ TGATGAAACAAGCTTAGGCGATATCTCGACTG 2434 28 100.0 32 ............................ ACGCAAAAAAAACGTAAATTAGTTAAAAAAGT 2494 28 92.9 32 .......A....G............... ATCATCGCTTAAAACAAACATGCCCTTAGCAC 2554 28 89.3 32 .......A....G.......T....... AAACAAAAATAGGGTTGGGGTAGATTTGGCCT 2614 27 89.3 0 .......A............A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.1 32 GTTCACTGCCGTATAGGTAGCTTAGAAA # Left flank : TTAGGTATTAAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAGCGATTTTGTAGTGCGACATTCGCAATGTGCTGACAACTGAGAGATGTTAACATGGCAAACAGGGATGTTTGCCAAGGCTGTGATTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTACGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAACGGGGTTTTTGAATCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : ATATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCAAAATTAGTTATAGCTTTGTTAAATAAAAAAAACCCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCAAGGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGATGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAATTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGCGTTGAGGTACCATGAGTATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26851-26464 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000078.1 Gilliamella apis strain A-4-12 NODE_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26850 28 100.0 32 ............................ ATTACTTTTTCCTCACGAGTAATTATTAGGTC 26790 28 100.0 32 ............................ AGCTAAAAAGCAAAATGACTTGTACGCTAACG 26730 28 100.0 32 ............................ GCATCGTCACACGCCTGTAAAACTAAATCGGT 26670 28 100.0 32 ............................ AAACCATAGAGCCGTCAATCTCATTATCTTTT 26610 28 100.0 32 ............................ TAACGGTTCACGTGTTTACGTGCAAAAATCAA 26550 28 89.3 32 .......G...CA............... AATTTTATTTGAAGATACGCCGAGCAGTTCGC 26490 27 85.7 0 ....................CCA.-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CTAAATTCTATTTGCAGTTCAAAGTACCGCGTTACCAAGATTTGCCAGCTAGCAAGTTTGACGAGGCTATTAAGTGGTTGGGTGGTGTAAGCATGAGAAACGGGTTGTCTGATGAAGATTGGTACGATTTAGCTTGGCTTTATAAAGTAGCAGATAGGATGCGTTCTCAAATTGAGCTTATCGAGCCAGCCCTTAGGGCAATTGATTCTAGTTTTGTCAGTGCATTTCACTCTATGTCAATCGAGTACAAACGAAATTTACATAGTGCAAAATTAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATAGACAAATGGAATAGGGTTTTACCTGTAATTAGACATCATTAATTAGTTAACCCTTTTTTTGCTGATTCTTATAATTCATTTAAAATCAAATGATTATAAACAGGTGTAAAAAAAGGGTTTTTAGCTACAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTA # Right flank : TTCAAAATTAAAACTATCACAAACCGCCTTCTGGCGGTTTTTTATTGCTCATTATTCCGCAAATCAATAACAGATTTAACGCTCACATGAATAGCTCGACGGAGCAAAAGCATGAAGCTGCCTACCTTCAGTGGATTGTTTTCATGTGAGCTTTTATTAAAAAGGTAAAAGGAGTGATTAATGAATAATTTAAAAAAATTATAAGTCCCATTTTGCAATACAACAATCCAAGCCATTGAGCATAATGGACAGCTTTATGTTTCAATGCGCCCCATTTGTAAGAATATTGGTTTGTAGTGGGGATCTCAGTATAACCGTATCATGCGTGACGAAGTAATGAAAACCTGCGTCTTCATTATGAAGACTGAGATTCTATAACCCTCTAATTTCTTCTTGGTTTATTAATAATATGAAAAAATCCATCACCTTTAAGAGATCATTTAATGATCAACTTATCGAAATATTATGCTATTATTCTGACGATAAAAATAAACAGGATA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7456-7244 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000091.1 Gilliamella apis strain A-4-12 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7455 29 100.0 32 ............................. AACTTTTTTTGTTTCACTTAGAATTTCTCTTT 7394 29 100.0 32 ............................. TGCTTTAATGTCGGAATTGGTAATCCATGTGC 7333 29 100.0 32 ............................. GTTTATCATTTACTAATACTGTATATTCATAC 7272 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : TGTATTATCTATGGTGCATCATGGTATAGATTCCTAGGAGCTGGCAATGAAATGATAAAATTAGTTGAAGAAAAGAGAATACGACCTGCATTGATTACGGGCTTGATTACAGTTATATTATTGAGCTGGAGTCTTTATGATCTATCAGCAGCTAATGTCATTCCCCCGTTGCCTTTTGTTAAATTCATGCTGTATTTTATCAGTGTTGCGTATATCACAAGAGGAGTAATCGGATTTGCTTCCCAGCGATTTCGTTTATGTTTTACAGGGAATAGCGAAACCTTTTGGCGAATCAGCTCATCTATTTGTTTAATCATAGGTATTATCCATAGCATTGGTATCTATCAGTTGTATCTGCAATCACATAATTTATGATAGACAACTAATTTTATAGAGTTCTTTTAGATAAGCTTGTCCGCTTTTGTACTAAGCGGTCTCGCTGTCAGATTAGTTCGAAATCTACTCTTTAAAATTGTCAGATTAAATCGGAACTAATACAT # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGTATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8276-8125 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000091.1 Gilliamella apis strain A-4-12 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8275 29 100.0 32 ............................. ATACGAAAAATCATATCTTGATGTTATATCAA 8214 29 100.0 32 ............................. TTCTTGCATCGCTTGCGAATGCTGGTGCAAAT 8153 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TAATCTGACAGTCAGCTTAAGAGCAACAATTGAATTTAGTATTTCGAATGCGTATAATGACTCGGAACCTATGCAAATAATATTCTTTCATAAAGTTACAATCTAAAAGGGCTCTATGCTAATTTTTGTAGGTATTTTAAATTTCTTTGCAGCGCTCCTTCACCTTGGATGTATTATCTATGGTGCATCATGGTATAGATTCCTAGGAGCTGGCAATGAAATGATAAAATTAGTTGAAGAAAAGAGAATACGACCTGCATTGATTACGGGCTTGATTACAGTTATATTATTGAGCTGGAGTCTTTATGATCTATCAGCAGCTAATGTCATTCCCCCGTTGCCTTTTGTTAAATTCATGCTGTATTTTATCAGTGTTGCGTATATCACAAGAGGAGTAATCGGATTTGCTTCCCAGCGATTTCGTTTATGTTTTACAGGGAATAGCGAAACCTTTTGGCGAATCAGCTCATCTATTTGTTTAATCATAGGTATTATCCATA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 26305-26578 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000091.1 Gilliamella apis strain A-4-12 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26305 29 100.0 32 ............................. TGATGATCAACCGAGTCAACACCAACGGTCAG 26366 29 100.0 32 ............................. AAAAACCAGATTATTTAATATTTGCTGATTCA 26427 29 96.6 33 ............................A GTAATTTAGGCACTCCATGGAATAACCGCCCAT 26489 29 100.0 32 ............................. CAATTACTAAATTTTCAAATACATTAAAATAT 26550 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 32 GTGTTCCCTATACACATAGGGATGAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACTAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACCAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAAAAAAAATCGGTAAAAAATTACTCTCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TTATTACTGGCTAATTCGTTAAAACTACCTGACGAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAATCAGTGGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTCAATCATATAAGTGGAACATTACTTGATATTTATGAAGCACGCTTTAATGCACAGGAATCACCAGATGGTATAACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAAATAAAATCTTAACGCTCGATGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2472-2980 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000067.1 Gilliamella apis strain A-4-12 NODE_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2472 28 100.0 33 ............................ AATTTCATGCCCGTAGTACTGCAAAACCGAGCC 2533 28 100.0 32 ............................ CATCACAAAAATAATATGGGATAGCGTGGCCT 2593 28 100.0 32 ............................ ATCAAAATCCGCAGGAATAGAAGGCGCGCCTA 2653 28 100.0 32 ............................ TTTCTTGCGATAGAAATGTTTCATTGATGTGA 2713 28 100.0 32 ............................ GCAAAAAAGATGCTCGTTTTAGCCGTAAAATA 2773 28 100.0 32 ............................ ACCGAGTCCAATTCGGTTCTTGATAAGTAGGG 2833 28 100.0 32 ............................ TATTCCTGTAGGAGTATGGGATATAATTGATG 2893 28 100.0 32 ............................ CGTTATACTACTAAATATATTTGAAAAGAAAT 2953 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : ATAAAAGTTTATTGTTTGCCAATCAGTTTGATGCTTCTCATTTAGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTAAAGCCCCAAAATCCATCCCATCACTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAGAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATATAAGTGGAGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATAGTGATTTTTAAAGAGAGGGAATAAAGGGTCTATTATTTCTAATAAACAGCAAATAACCGATGCTGTTTTCGAGCTATCAGTATTCTTCTTTACAAAAGTTAACAATTAAACCGCCAAAAAAAGTTGCATGGTTTTTTCCAATCACTATACTTTTATAGTATATTTATATGAATTAATAAATTTTATGCCGCTAGGCACAAAATAGTAAATAAATCATTAATTTAATTGACAGGAAAGTCAAAATGCATTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCATACCGTTTATTATTTCACTGCAGTTTTTTATTTCAGCAATTTCCGCAATTCCGGCAAAATATTTCAAAATTTCTTGGTTTAGTCTTTTTATCTCGGCAGATGGTTTTGGTATTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 371-699 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000064.1 Gilliamella apis strain A-4-12 NODE_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 371 28 100.0 32 ............................ TTTGGAGAATTGGCATTATCGACCCTCCAAAA 431 28 100.0 33 ............................ TGAAACCGAGGGAAGTCCGACAGATATAAGATG 492 28 100.0 33 ............................ TAGTGATGGTTTAATAATTGATACGACATCTGG 553 28 100.0 32 ............................ TCTGCGACGGCGTTGGAAAAGAAATTATCGCG 613 28 100.0 32 ............................ AGGCGAGGAACCTGGAAGCATTTTATCTTCAT 673 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 33 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTACAGAAATAATCGCAGAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAAAGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTAAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATCGAGTTCTAGG # Right flank : ATTAATTAAAATTATAACACTCGAAATCCACCAAACTAGAAAAGTTTAGCAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATCATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCAGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCCTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGTGCTAGGGAAAAATATGTATGGCTTAATAAATCAACATTTGATAAATATGTTACCGGTTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATCGCTTTGATTTTATCAAATATTATTTTTTATCCTTTGCTGTTAACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2006-2273 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000055.1 Gilliamella apis strain A-4-12 NODE_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2006 28 100.0 32 ............................ ATTAACGATATGGGCGGGCTTGAAATGCGAGA 2066 28 100.0 32 ............................ CAGAAGAGGTTGTTAAATTAGTTAGAACAAAA 2126 28 100.0 32 ............................ CTGCGCTCTATTAGAGTTTGGGCCATTGTCGC 2186 28 100.0 32 ............................ TTTGGAAGAAGCTCTCTACATTCTCCCGTTTC 2246 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : ATTAGCTCGCTATAAACATAAAAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTAAAACAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAGTGTTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGCAAAAATAGACTTTGCCTTTTTGCCAACTACATTTATAGTATATCCGGCACTA # Right flank : ATATATAAGTGGCGGCATGGGTAACATCAAGAAGTACACTGCTTATGGAGTGGGTTAAAAATGGTGATTTTTTAAGAGAGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAACCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCGCATCGTTCATTATTTAACCGCAGTTTATTTTTTCAACAAATTCGGCAAAATTATTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCTTGGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4414-4026 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000043.1 Gilliamella apis strain A-4-12 NODE_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4413 28 100.0 32 ............................ TACATACTAAAGAGCTCGAAACTATAAAAGCT 4353 28 100.0 32 ............................ GCGAGCAGAATATCGACACGATGACTTTACTC 4293 28 100.0 32 ............................ AGTAATTACAATTTGCGGTTCTTGTTTAGTAA 4233 28 100.0 32 ............................ ATCACCACCTAATGAGTAGATGATTAATGTCG 4173 28 100.0 32 ............................ ATTTGGGTGATTGTCCGGATCGGTTTCATCCG 4113 28 96.4 32 ............A............... AGGACTATACAAAAGCGATCTTGAATCGATAT 4053 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAAATTTGAGGAAAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAAATCAATGCATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTACCAACTGCATTTATAGTATATTGGATTCT # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAATATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTGTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2821-2433 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000033.1 Gilliamella apis strain A-4-12 NODE_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2820 28 100.0 32 ............................ ATATGGTTTTATTCAAATAATACCCTCCAAAA 2760 28 100.0 32 ............................ TGTGGTAGCGGTCGGCAGCGGTGAAAACTATA 2700 28 100.0 32 ............................ TCAATTGATGAATTGAGGCTTGCTGCCAAAAA 2640 28 100.0 32 ............................ GTTATGACTACCACCGACAAAAACCACTCGTT 2580 28 100.0 32 ............................ TGCCGAGCATAAATGCTTAAATAACCGAAAAG 2520 28 92.9 32 ............G.......T....... TCGAGTTACAACTCCTCAAATTGCAGAACACG 2460 28 67.9 0 .......G....G....CG.T..TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : ACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAAAGGGGTTTTTGAAATCTAAAACATCCTACTACTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCT # Right flank : TGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGGAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGGCATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2116-3824 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000060.1 Gilliamella apis strain A-4-12 NODE_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2116 28 96.4 32 .........T.................. GCCACCGTCTCCAAGCTGGCTGTACTTAGCTT 2176 28 96.4 32 .........T.................. TGTGATAGGGTTTCGATATTTTTCACTATATG 2236 28 96.4 32 .........T.................. TCGTGGTGATTGCTGTAGAGTTACGTCTACAA 2296 28 96.4 32 .........T.................. AATAAAATGCAAAGTGATGTAAACCGAGCTAT 2356 28 96.4 32 .........T.................. TGATTAATCGTTCAGACTCTGATTCTGTTATA 2416 28 96.4 32 .........T.................. TCATCAAGGCTTAACCAAAGTTCTTCAAAACC 2476 28 96.4 32 .........T.................. ATCTAGAGCCGAATCTATTATGCGTACAATAG 2536 28 96.4 32 ...C........................ TTGAATTATTTACAGTTGATGTATCACAACTA 2596 28 100.0 32 ............................ ATGTGTCTGACCCTCGGATGCGAACGTTTCGG 2656 28 100.0 32 ............................ GCAAAAGAAATAATCGGAGTGCTAACGCCTGA 2716 28 100.0 32 ............................ CATTGGCGCAGTAGTTGCAACAAAAAATGTTA 2776 28 100.0 32 ............................ ACGCACCCCAAATTGTCTGACCATCCATTTTC 2836 28 100.0 32 ............................ ATTAGAACTTTTAATGTTATCTTTGGCCAGAT 2896 28 100.0 32 ............................ CGTCAAATTGAAATGTAAAAAAGTTGGGCTCA 2956 28 100.0 32 ............................ AATGGGAACACATCTGTGTACGAGTTGCTTTA 3016 28 100.0 32 ............................ GCTACTGTGAAAAAGACAACACCCCAAAAGGC 3076 28 100.0 32 ............................ TATTAAGAAATTTTTCTGAAAAATCAACAAAT 3136 28 100.0 32 ............................ GTTAGATTCATCTAAGACTGGCTTTATATCAC 3196 28 100.0 32 ............................ ATATTAGAAGTGGTGCAATTATTGAAGATGAT 3256 28 100.0 33 ............................ TAACACCTCTACGCCAACTAATGCCACCGCAAT 3317 28 100.0 32 ............................ ACTTCATAGCGGGATTTCATCATCTTGTTTTT 3377 28 100.0 32 ............................ TCTAATGACTTTTTCAAAAATTGCGTGCGATT 3437 28 100.0 32 ............................ ACAATAACCGCTTAATTGCGGTTTTTATATCA 3497 28 96.4 32 ...C........................ TACACAACAGCAATTAATGGCTATGGCAATTA 3557 28 96.4 32 ...C........................ GACAGAGACACGATCAAAAAATGATTTAAATT 3617 28 96.4 32 ...C........................ TAGCCTCGAGAGAGACCGACTAGCCATCAAGT 3677 28 96.4 32 ...C........................ AGTCGATACGTCTAATCATAACCCGTGTTTGC 3737 28 96.4 32 ...C........................ TCTTTCCCCTTTCTTGAGTGCGTATGTCCTAG 3797 28 89.3 0 ...C........A.....G......... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.0 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : GTGTCTATCCTTAACTATTATTTCTTAGTTCTTAGGTATTGAAGCTGAGGTAAGAAAAATACCGTTAGGGTGTTAAAAAACGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTAAAACAACCAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : AATAGTTCCTGCGTTCAACTCGTGAACCGATGGGTTTTAACGCCGTGTAGGCAGCAAAATCATTTGTATCATCTTTTGGATAATTATAGTTATTTTAAAAAAGATCGTTTTTTACACAAAGTAATGTTATTTTATCATCATTATAAATTGAATTTACTGTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTAGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACCAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : GTTTACTGCTGTGTAGGTAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21839-22295 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000097.1 Gilliamella apis strain A-4-12 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21839 29 100.0 32 ............................. GCGAGTGCTTTCCTTCAATAGCGTATATAGCC 21900 29 100.0 32 ............................. CCAAAAGACGTGGTTTTTTTATGTTTAATGGC 21961 29 100.0 32 ............................. TTAATAACGTGATTGGCGTCCTTGGTGGCACC 22022 29 100.0 32 ............................. GATAAGTTTTAACGAAAATAATTTAGATTTTG 22083 29 100.0 32 ............................. AACTACCAGAAATCAATATCGGTCAAGCCGTG 22144 29 100.0 32 ............................. AAGGTATCGATTTAATCGACCAGATTTTACCG 22205 29 100.0 32 ............................. GAACTTTTCGCGTCAAATTTTGTTCTATCTCC C [22210] 22267 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTAATGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGAATGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGTGGTTTTTTATTGCCCAAACCCTTTAAATAACATACCATTACCCAAAAAAGGATATGGTATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52482-53229 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000093.1 Gilliamella apis strain A-4-12 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52482 28 100.0 32 ............................ TGATTCAGTTTGCGAATTAGACAATAACGACG 52542 28 100.0 32 ............................ TTGGGCGAACAATATTTGCATTATGGGCAAAC 52602 28 100.0 32 ............................ TAAAAAAATTAACAGCCTTACTAAAAGGCTGT 52662 28 100.0 32 ............................ AGCATAAGCTGCTCTGATTTCTGCGTCTGTTA 52722 28 100.0 32 ............................ TATTACAAATGCAATGGCAAATGATTTGTACA 52782 28 100.0 32 ............................ AGCCGCTAAACTGTTTAAATTGTTCAAGCCTT 52842 28 100.0 32 ............................ TGCCCGCAATAGTAAATGGGGTTCGATGTTGA 52902 28 100.0 32 ............................ TCGGGGAATATTAATAAAAATTAGGTGATCGG 52962 28 100.0 32 ............................ TACCTCAGTGAATAAATTCGCTCGGGCAAATA 53022 28 100.0 32 ............................ ATTTGAGAGACTCCATTATTAATATTGTTAAG 53082 28 100.0 32 ............................ AATAACCACAATTCTCACTATATGTGACATTT 53142 28 100.0 32 ............................ GAGAAAAATTTAAGTCGATTACTTATAATCGT 53202 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CATCAGCTAGTTCCATTAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTCATTTAGCGACATCCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAATTTGAGGAACGGGGTTTTTAAAGCCAAAATCCATCCCATCACTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTACCAACTGCATTTATAGTATATCCGGCTCTA # Right flank : ATATATAAGTGGCGGTATAATCAAGAAATACACTGCTTATTGAATAGGTTAAAAATAGTGATTTTTAAAGAGGGGGAATAAAGGGTCTATTATTTCTAATAAACAGCAAATAACCGATGTTGTTTTCGAGTTATCAGTGTTCTTCTTTACAAAAGTTAACAATTAAACCACCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTGTGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAAATTCACCTCTCTAAAGTTAAGCTCACATCGTTTATTATTTCACCGCAGTTTATTATTTCGACAATTTCCAAAATTTCAGCAAAATTTTTCAAAATTTCTTGGTTTAGTCTGTTTATCCCGGCCGATGGTTTTGGTATTAACCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58602-59231 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASK01000093.1 Gilliamella apis strain A-4-12 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58602 28 100.0 32 ............................ ATAAAATATCTACACCAAATAATCAGCGCAGA 58662 28 100.0 32 ............................ GATACAACGACAGCAATTATCAAGTAGGCGAT 58722 28 100.0 32 ............................ ATTGTGCGCAAAATCTTTTTTTAATAAAAAAA 58782 28 100.0 32 ............................ TAGCGCCCACTTTAACTAATTTAATTGGTGGA 58842 28 100.0 32 ............................ TCGCAAGCAAGATTAGAGGTTTCTAGAATAAA 58902 28 100.0 33 ............................ CTGCTAATGGTACCGATTTTATTAAAAATAAAA 58963 28 100.0 33 ............................ CTCCTCAAAACCTGTTGTAACATACTGTATTTT 59024 28 100.0 32 ............................ AACAATCAAAAAGCCTGTTACTAGCAGGTTTT 59084 28 100.0 32 ............................ GATGGAATAATTCCATCGGAGGGGGATTTGAA 59144 28 100.0 32 ............................ TACCCCGCCTAGAGCTTTACCAATCGCTTTAC 59204 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.4 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CAGCTAGTTCCAATAATAAAAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAATTGAGGAACGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATAGCTTAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATCCGGCTCTA # Right flank : ATATAGTAAGTGGCGGTATAGGTAACATCAAGAAGTACACTGCTTATATAGCGGTTTAAAATTGATTGCCTAGTGATAAATAAACTGACAACAAATTAAATTTATCTATTTAAAAAATCCTTAAAGCAAATTACTCCCTCAAAAATTGAGAAGAGGAGAGAATTGCTTTTAATCCTATATTGCTTAGTCTTTCTGGTTAAAAATTGAATCTATATCAAATTAGGCTATAATGCCGCATCGTTTAATTTTTATTATTAAAAATGAATATTGGTTTTATTGGCGCCGGTAAAGTGGGTTGTAGTTTGGCTAAATATTTCAGCCAATGTGGTTTGCCAGTCGTTGGTTTTTATAGCCGTGATGCACATCAAGCACAAGCAGCAAGTGATTTTACGAATAGCAAAGCATATTTAACTTTATCTAACTTAGTAGAGGATTGTGATTGTCTATTTTTGACTGTGCCGGATAGTCAAATTAGCTCAGTTTGGCAAGTGGTTAGTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //