Array 1 637-3 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 636 29 83.3 37 .........C...AGA-............. TATTATAAAATTTGTATGAAACAGCAGAAGTTATTCA T,T [617,627] 568 30 96.7 40 .............C................ TAGCTAATAAAGAGAATATTTTGGTTTTGAAGCCAGTTAG 498 30 96.7 37 .............C................ ATTTTGGAGGCTTAAACTTAAATTGGATATCAACACT 431 30 96.7 36 .............C................ TAAAAAATCAGAGATTAATATTGATAATCTCATTAA 365 30 100.0 36 .............................. TAGAGAAATATTAGAAACATTTTTAGATGATAGCAT 299 30 100.0 35 .............................. TTGCAATATAGCTGCACTCCTTTTGCGTTAAATGC 234 30 100.0 40 .............................. TTAATGTAATAAAGAGATAATAAATAAGATATTAGAATAC 164 30 100.0 36 .............................. TAAACCTTTTAATTTGAATAACACAAGGGAGTATAT 98 30 100.0 36 .............................. TAAAGATAAATTGATTTTAAAACTGTTATCTCAATA 32 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 97.3 37 GTTTCCATCACGATCCGTGCTGATTTTAAT # Left flank : CAAAGAGAAGATTGATAAGATTAGAGGCATATAAGTTGGTTAAACACTTAGTTGGGCAGAAGAAATATGAGCCGTTAGTTGCATGGTTTTAATAATTATTTTTATTTTAATTTATTTTAGTTAATTTTAGATAATATCATCAATTGGGTTCTTTTCTAAACCCAAAATCTCTCTTTTTGGCATAAAATCCAATGGAAATTTATAGATAATCACTGAGTCCTCATCTTCATCAATAATTCTCAAGATTCCATCTTTTATTCTTTCAAACTCTGCTTTTGTTATTTCCCCTTCGAAAACGCTATTTTGAACCCAATTTAAATGCTTCCTCAAAAAGCTTTTTACTTTATTCACTCTCGCAACATTCACATCATAAACGATAATAACATACATAGTCCCATCTGATGAATTTCTAAAAACTTAATTTGTAGTAATTGAATATATATTTATTCTGTTTCTTGTGGAAAAAATAGAACGTCTGTAAATAATTTAAGAGATATATT # Right flank : TAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCACGATCCGTGCTGATTTTAAT # Alternate repeat : GTTTCCATCACGACCCGTGCTGATTTTAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 172976-173485 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 172976 30 100.0 37 .............................. TGGAAAATCGGAGTAGTTTAGTGCGGTTAAGTAATAT 173043 30 100.0 39 .............................. ACAATTTTAGTTGCTGTTTAATACTATGTTTTTATAATA 173112 30 100.0 37 .............................. TGGAAAATCGGAGTAGTTTAGTGCGGTTAAGTAATAT 173179 30 100.0 39 .............................. ACAATTTTAGTTGCTGTTTAATACTATGTTTTTATAATA 173248 30 100.0 36 .............................. TGTTTTAGAAATGCTTCTTTTGCTTCTAACCTACAC 173314 30 100.0 40 .............................. ATATTTGTTCTATTTTTTCTAAATAATCTTCTGTTATTGT 173384 30 90.0 42 ...............AT............T TTCTTCTTTTCTTCTAATATTTTATCTGCTTCTTCTTTATTA 173456 30 86.7 0 ........A......AT........A.... | ========== ====== ====== ====== ============================== ========================================== ================== 8 30 97.1 39 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : AAGGGTTTTGGGACATCCATACATATGAATTGATAGAAAGAGAAATCGAGATCTCAGAGAAAGGAGTCCGCCCATCTACACGAATGATTGGACACACTGGATACATAACCGTTGCAAGAGTTCCTCCTAAACAAATTTAACTTGTTGTTTGTTTTTATTTTTTTGTGTTTTGAGTTTTTAGTTTAGATTTTTGTTTTTTATTTGTTTTTAGTTGGTTTCTGAGGGTTGGTTTGTTTAATTGTTTCTTATATTTAGATGTGTTTGATTATGGAGTTTTTTTAGAGTTTTTAATTGTTTATAGTTGTTTTTAGAAATCCACGGTTAATTAAGTGTGTTTTTTGTTTTTGTTAATTATTTATTGTTGTTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAAAGGGGTTATCTATGGGTAGAAATCTTATAGTGTAGAAAAATATAAATATTAGTAAAAACATTATAATGAAATAAGAAAGATTGTCCT # Right flank : CTCATCTCTTTTTGTATCTCCTACTATGTAATATTTATATTAAAATCAGGATGTAAAAAGATATTAAAATCATTTTTTATTGAGCAGTAATCGATCATAAAAGAGCCCTAACTTACTAAGTTGACATAAATAGGACGATCTCTATATATGGTCCTTTTTTGATGTGTGTTTTATCAATAATAGTTTTTTAGACATGCATACTATTCATTGGCAATAGTATATATTTGCATAAATAAAACAATAGAAAATTAATAAAAAATTTAAAAGAGTAATGTCAATAGGAAATAGATATTGGCTAAAATCAACAGAGGTGAAATTTTGGATTTTTCAGAGTGGTATTCTGATATTTTAGAAAAGGCAGGAATTTATGATGTAAGATACCCAATAAAAGGGTGTGGTGTTTATCTTCCATACGGGTTTAAAATCAGAAGATATGCGTTTGAACTAATAAGGAAATTGTTAGATGAAACAGGGCACGATGAAACATTATTTCCAATGTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 226214-226451 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 226214 31 100.0 34 ............................... CTTAAATCCCCAGTTCCTTTAGGTGTCTTACTAA 226279 31 100.0 40 ............................... TTAGGTTCTGGAGAATTTGGTATCTGGTTTGGGTAATTAA 226350 31 100.0 38 ............................... TGGTTTGGCTTTTGTTTGGCTCTTTTTTTATTTTTTTT 226419 31 96.8 0 ........................A...... | AC [226446] ========== ====== ====== ====== =============================== ======================================== ================== 4 31 99.2 38 ATTAAAATCAGCACGGATCGTGATGGAAACT # Left flank : AATGCTACCAAAAAAACCAGAGAAAAGGAGAGATCTTATAATTAAAAAAATGAAGGATGTTGGATTAAATGTTGAGATTGATGAGATTAGAACAGGAAATAGATTAAGATACGTAATTAAAGGGTTTAGATGCTGATGTCTTGTTGTTTGTTTCTGTTTTTCTGATTTTTTAGTTTTTAGTTGAGGTTTTTGTTTTTTTAATTGGTTTTAGTTGATTTCTGAGGGTTGATTTGTTTTATTGTTTCTTATATTTGGATGTTTTTGATTATGGAGTTTTTTTAGAGTTTTTAATTTATTGCAGTTGTTTTTAGAAATCCATGGTTGATTAAGTGTGTTTTTTGTTTTTATTTTCTGTTTATTGTTGTTTTTTAAATAAAAGTTTGGATTGTTTTGTTATAGGGTTTATAAAGAAAAGGGGTTATCTATGGGTAGAAATTTTATAGTGTAGAAAAATATAAATATTAGTAAAAATATTATAATGAAATAAGAAAAATTATCCT # Right flank : TCGTTCAAATATTAGGTATATTTATTAAAAAATCTTAATTAAATAAAATATATTAATTGATTTATACTTCAAAGGTTTTCTACCAAAAAGGTTGCAATAGAGTAGTCATGGTTTAGAATACCATTTAAAAAAGTTATTTTCTATAAATTCTCTGATACTCATGGGGGGCAATCCTGTAGCGATGCTGTAAACTGATATTCCCCCTGCTCCGACACCTTCTTTTACGGAACCTCTGCAATAGTTTTTTAGACCTTTAATTTTTGCATTTTCGAAATAGAGTTTTGATGCAAATAATGGAACATTTCCGATCTGTTCGACTATTCCTTTTAAATCTCCTTTTTTATCGTTTAACACAAATTCTGTTGTTCCTATTGCAATTAAATTATTTTTTAAGACATCTTTATTTATTTCCTTTATAACTGCTAAAACGGCACTCATTTGAGTTCCTCCTGCTAAAATCACGGGTTTATTTCTCTCAGCAAAACTTAGGGCTAAACCAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 293401-294444 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 293401 30 96.7 35 ..............A............... TATAACTAAAAGTTGGATTATGGTATCCTCTTGCA 293466 30 96.7 41 ..............A............... TTATTATTACCTATTCTAATACAGTATGATGTTTTAGTATC 293537 30 96.7 41 ..............A............... TAATTTACTCCCAGCATTGTTCTGATTGCAAAATGTGTTTT 293608 30 96.7 42 ..............A............... TCACGATGAGATATGGAGCAAAATTTATCTTTTTTATATTTT 293680 30 96.7 36 ..............A............... TTTACTTAATCGTCTTAATGCCTCTTCAACTTCTCT 293746 30 96.7 33 ..............A............... TTCTCTTTTTTATCCAAATAATCTTTTAGCATT 293809 30 100.0 38 .............................. AACTATCAACTGAATTATATTGGGTATATAGACGAGTG 293877 30 100.0 36 .............................. AAATAACTAAAAGATCGGAAAGAGAAGTTGAAGAGG 293943 30 100.0 40 .............................. TCAATAGACGATATTATAAACAACAGCAATCAAACAGCAA 294013 30 100.0 36 .............................. TTGATAATGATGATAGGAGTTTGTTAAATGTAGATG 294079 30 100.0 40 .............................. TTTATATTGTTTCTTTCACAATACACACAATTATCAGTCG 294149 30 100.0 37 .............................. AACAACTGCTGCTTTTATTCCATTTTTTTCAATTACT 294216 30 100.0 37 .............................. CGCAGATAGATTTGTATTAATGTCAGCAACAATATCA 294283 30 100.0 35 .............................. TCCAATATGTAAAACTCTGTTAAGTTTGTTAAATC 294348 30 100.0 37 .............................. CTAAAACAAACTCTTTCCCAACTAACTTTTCAGCAAA 294415 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== ========================================== ================== 16 30 98.6 38 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : ACAAATTTTCCAAAATTTAAAATATCTTTTATTTTGCTTGGTTTTACTGCAATTCCCAACATATAACCACCCACTACATTGAAAGAATTTATTTTAATTTTATTTTTAATATATAAAAAATTGATTTCATAACTATTTATCTTGTTGTTTATTTTTATTTTTTTGATTTTTAGGTTTTTGGTTTAGATTTTTGTTTTTTATTTGGTTTTAGTTGGTTTCTAAGGGGTGGTTTGTTTTATTGTTTTGTATATTTGGATGTGTTTGATTATGGAGTTTTTTTGAAGTTTTTAGTTATTTGTAGTTGTTTTTAGAAATCCACGGTTGATTAAGTGTGTTTTATGTTTTTATTTTCTGTTTATTGTTATTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGGAAAGGGGTTATCTATGGGTAGAAATTTTATAGTGTAGAAAAATATAAATATCAGTAAAAATATTATAATGAAATAAGGAAAATTACCCT # Right flank : CCTACCAAAATAAGGATTTACTTTAACAACTTGATTTTAAAATTAAAATGTCCTGTGATGGGAAGATTTCTATTTTATAAGTTCCAACTCTTCACTAAATAACATAATACTCTTTTAACTTTAAATTAATCGATGGGATTTTTCTGATAAAAAGTTTTTAAAAGAGGTTATCTTTAAAATAACAAGAGCTGCTTTTATACCCGTTAAACACAAGATTTATATTATAAACTAAACTTACCTTTACATAAACAAATTATTAAAAGCGGGATTTTTATGATAGTTTTAAGAAATGAAATTTGCGATAAATTGGAAAAAATAGTTAAAAATTTAAAATTTGTAAGGCATTGCATTGGTTGTGAGGGTATAAATTTAGAAATAGAGGATCCTCATCATCACCCCTCCATAGAACTAACTCAAAAGTGCAATCTAAATTGTATATACTGCTATTCACGATTAAAGAGTATAAAAAGCGGAATATATGGAAATCTTGATGAAGCAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : ATTAAAATCAGCACAGATCGTGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 300283-299658 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 300282 30 100.0 39 .............................. GGGTTAGTTCCTTTTTATTAAGTTCTAAAAAAATACTTG 300213 30 100.0 42 .............................. TCTATAAATTGAGTTTGGGTAGAAATACTGTTCAACTAATCC 300141 30 100.0 35 .............................. TTCTGTTGTGTTATATATTTGCATAACAATATCAA 300076 30 100.0 36 .............................. TACAAATTATCTTAAAAGTTATTGATGCTAAGCTAA 300010 30 100.0 33 .............................. TGTATATGTTACGGTTATAACTGCCTGTGAGCC 299947 30 100.0 46 .............................. ATCTCTTAGCCCTTTTAAACCATTCTTCCAAAGTGTCTTCATCCTC 299871 30 100.0 34 .............................. ATAGAATTAATGGAAGAGATTAATAAAAGAATAT 299807 30 100.0 41 .............................. CTTTGTAAATTACTGGAAGTTTTTTTAATAATGCATCTGAA 299736 30 96.7 19 ............................G. TATAAAAATTTTAAAATTA Deletion [299688] 299687 30 73.3 0 GG......A.A..T....A.G....A.... | ========== ====== ====== ====== ============================== ============================================== ================== 10 30 97.0 36 ATTAAAATCAGACCTCTTCGAGGATGGAAA # Left flank : TCGTCTCCATTGCCTCAGAAAGACCATTTGAGGAGGAAGAGATAAAAGAGGCCTTAAAATTAAAGGAAAAGTTAGAAACGATGAACACTGCTGGCTATTATTAAAAGATTTCAGGATCTATTTATATTTTTTTATTTATCTTGTTGTTTATTTTTATTTTTTTGATTTTTAGGTTTTTGGTTTAGATTTTTGTTTTTTATTTGGTTTTAGTTGGTTTCTAAGGGGTGGTTTGTTTTATTGTTTTGTATATTTGGATGTGTTTGATTATGGAGTTTTTTTGAAGTTTTTAGTTATTTGTAGTTGTTTTTAGAAATCCACGGTTGATTAAGTGTGTTTTATGTTTTTATTTTCTGTTTATTGTTATTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGGAAAGGGGTTATTTAAGGGTAGAAATTTTTATAGTGTAGAAAAATATAAATATCAGTAAAAACATTATAATGAAATAAGGAAAATTACCCT # Right flank : CTCTGAAAAGATATTACATAATTATTTCGTAAATGAATTCGTTTAATTATTATTTTTTATCACTAAAACATTAAAAACAGATTTTTTATTGGGCGTTATCAACTCTAAAAGTCCTATTGGTAGATGTATCTACTATAATGATGATTATTTTAAAGGTATTATTTTTTATAAGGACTATTTTTATATACTGAAGAAGCTAAATTAACATATTTAATATTTAAGTTGGTGGTAGATTGATATTAAGGCCTGTTCTTCTTGGAAGAAATTTTAATGAATATGTTAGAATGTTTAATTTAAATGAAGATTTATTAGGTAATAAAATTTTGGATGTTGCTTCTGGTGTTAGTTCTTTTTGTGCAGAGGGAAATGCAAAGGGATACAAAATAACTGCCTCAGACAAAATTTATAATTTAAAAGCTGAGGAGATTGAAGAAAGGTGTAAAAAAGACCTGGATTTTATGGAAAAACACCTGAAAGAGAAATTTAAAGATAGTTTTAAT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGACCTCTTCGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 444231-443197 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 444230 30 100.0 36 .............................. TTACATACTCAGTTGGATCAACAGGGTATTTTTTCT 444164 30 100.0 36 .............................. TATTTTCTGATAAGTTCTTCAAGATATTTACCTCCC 444098 30 100.0 36 .............................. CTTGCTCTAATATTTATTTCGTTCATTCGGGGCTCG 444032 30 100.0 42 .............................. CTCTCGGGGTTGTAATAATCGAACCTATATTCATATATTATT 443960 30 100.0 36 .............................. TTTACTCTAATACGTAATTCATTTAGTCGGGGATCG 443894 30 100.0 36 .............................. ACATAATACAAAAGCAATATCTTGTCCATTTAGGGA 443828 30 100.0 36 .............................. AATAAGATATTAATTAGATTATGTATGCAAATTATA 443762 30 100.0 36 .............................. TACTTCATAACCGCACAAGGATTTTACAAATTAAGA 443696 30 100.0 37 .............................. TAAAATAGGTAATGTGAGAATATGATAGATTTAACGA 443629 30 100.0 38 .............................. AATAATTTGGGTAGGATTTATGGAAAAAAGTTGATTTT 443561 30 100.0 35 .............................. CATATGTCTTAAAAAAATCTTTCAAATATTTTAAT 443496 30 93.3 33 ................G............T TTTTAATTCGTAGTCGTCCAATTCTAAATGTTG 443433 30 93.3 42 ...............AG............. TTATAAAATTTACTATCTACAAAAATCAATATAAGCTAAAAA 443361 30 93.3 33 ...............AG............. GCTAATAATGACACTATTACTATGTCATTTTCT 443298 30 96.7 42 G............................. TTAACTCTCAAAACAAAATCCGAATTTGGTATTTCTACTACA 443226 30 86.7 0 ...............TC.T..........G | ========== ====== ====== ====== ============================== ========================================== ================== 16 30 97.7 37 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : AAACAACGAACAACTAATAGGATATAACAAATACTTCAGAAAAGATACTGAAACACTCTACGAAGAAATGAAAAACAAAAACTTTAATGGTATAGATCAATTCCCATGGCTCTGGGAAGTAGAGCATTAAAATCCTCTTACTTAAAAATTCTTCCTATTTTTTGATTTTTGAGTTTTTAGTTTATATTTTGTGTTTTTTATTTGGTTTTTGTTGATTTTGAAGGAGTGGTTTGTTTTATTATTTTGTATATTTGGATGTATTTAATTATGGAGTTTTTTTAGAGTTTTTAATTGTTTGTAGTTGTTTTTAGAAATCCACGATTAATTACTTGATTTACTTATTTTTATTAATTATTTATTGTTGTTTTTTAAATAAAAGTTCGAATTATTTTGTTATAGGGTTTATAAAGAAAAGGGGTTATTTGGGGGTAGGATAATTATGGTGTGGAAAACTATAAATATAAGTAAAAATATTATAATGAAATAAGAAAAATTACCCT # Right flank : TTCTGTAGAATTAAAATAAACTCTAACATTATATAATTAAAATTATATCCACTAATGAAATAGAAACATTTCAAGTTTTGATGACTTTTTCAAAGTGGTTATGATTAAAATAAGACCCCTTAGGAGAGAAACGTTCCTTTTAAAATAGTGAAATTTTCAAATTTTAAATTTTGAAAAATTTCTAAGCAAAAAAGAGTCATATAATTATAAAAATCCAATTTATTTTCTCTTTTCAAATTCTGCATCAACAACTATGTGCCAAACTCCGGGAGCGTATTTTTTTACTTTATAGATAGAGTATTTAGTTAAGAAATAGTTATTTTTCTCAGCGTAGTATTTTAATCGCTCAATTGGTCTTTTTGTCATTATCTTTTCTGCAACAGTTTCATGGTAGTGAATAACTCCTTTCTCTTTCAAAAATTCAAATGCCTTATCTAAAAATTTATGCGTTTTGTGCACATAACCCATTATTACCCTATCTGCAATATTTTCAAGTTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 7 451284-450018 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 451283 30 100.0 40 .............................. GTTGGCTTGTTGCTTCAAAGTGTTAGGGTTTGCTGGATTA 451213 30 100.0 38 .............................. ATTATTAACTGCATCAATTAACTGTTCAAGTTGTTGTT 451145 30 100.0 35 .............................. TAGTAATAAAGGATACATATATAACGGATGAACAA 451080 30 100.0 40 .............................. TATTTCATCCATTACCATATCTGCATAGAGGGGGTCAGTA 451010 30 100.0 43 .............................. TAATAACACAGTAGGAGGGATATTATGCGAAATATTAATAAAT 450937 30 100.0 40 .............................. GTTGGCTTGTTGCTTCAAAGTGTTAGGGTTTGCTGGATTA 450867 30 100.0 38 .............................. ATTATTAACTGCATCAATTAACTGTTCAAGTTGTTGTT 450799 30 100.0 35 .............................. TAGTAATAAAGGATACATATATAACGGATGAACAA 450734 30 100.0 40 .............................. TATTTCATCCATTACCATATCTGCATAGAGGGGGTCAGTA 450664 30 100.0 43 .............................. TAATAACACAGTAGGAGGGATATTATGCGAAATATTAATAAAT 450591 30 100.0 40 .............................. GTTGGCTTGTTGCTTCAAAGTGTTAGGGTTTGCTGGATTA 450521 30 100.0 35 .............................. ATCGTTATGTATCCATCTTGTTTTTTTGTGAAAAT 450456 30 100.0 40 .............................. ACTGAAAATATGGACAGAGAGAGTTAAACAAAATGATTAA 450386 30 100.0 37 .............................. TTATCAAAATGAGCATATAAAGAAGTTCCTAAAAGAG 450319 30 100.0 54 .............................. AAAGATCTCGATATAGATGATCTCGTAAAATACAATTATACAAAAAAGACAATA 450235 30 100.0 37 .............................. AAGATTAGAAACGCATCTTTATGGTTAGATGACGTTT 450168 30 100.0 40 .............................. TAGTTTATATCCATTATCCCTTAATAAACTTTTTATTTCT 450098 30 90.0 21 ........................AA...G ATATTAAAATCAATTTTTAGA Deletion [450048] 450047 30 70.0 0 ............C.TCTAA.G...AA.... | ========== ====== ====== ====== ============================== ====================================================== ================== 19 30 97.9 39 ATTAAAATCAGCACGGGTCGTGATGGAAAC # Left flank : CCTCAATAATGCTTAATATTCTGAAATATAGTGGCAGTTCATATATATTGTTATCGTCAACAGACAATTTAGCATTTTACAAATATTTAATATTGACGTCTATTTTTATATTATATATTTAATAATGCATGATATTTATCTTGTTGTTTGTTTTTATTTTTTTGATTTTTAGGTTTTTAATTTAGATTTTTGTTTTTTATTTGTTTTTTAGTTGGTTTCTGAGGGTTGGTTTGTTTTATTATTTTATATATTTGGATGTATTTAATTATGGAGATTTTTTAGAGTTTTTAATTATTTGTAGTTGTTTTTAGAAATCCACGGTTAATTAAGTGTGTTTTTTGTTTTTGTTAATTATTTATTGTTGTTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAGAGGGGTTATCTATGGGTAGAAATCTTATAGTGTAGAAAAATATAAATACCAGTAAAAATATTATAATGAAATAAGAAAGATTGCCCT # Right flank : AGCAATCTGATTTTCTATTGAATTTATACTCCTATATTAAAAAGAGGCAGAAGTTCTAAAAGAATTGTATATATATTATTTTATTTTTCCAAAATCAAATATTAGAAATCTAAACTTATAACTTCAACACCCAATTTATCGATTAACATATCTTTAATTTTTTTAAGGCCGTAAACTTCCGTTGAGTAATGAGTAGCATCTATAACCACTAAACCAAGTTCCTCAGCCAATATTTTGGAATGATGAGTGAGATCTCCAGAGAGATAAACATCTGCTTTTTCTGAAACATACTTCACTGCGGATTGAGATAATCCATAGCCGGAAAGCACAGCCAACTTGAAATTTTCATCAACATCCCTACTCTTAACTACTACAGGATTTTTATGCAGAAAGGTTTTTGTTATTTTCAAAAAATCCTCAAAACTACCTTCAAAGAGTCCAACTCTTCCAAGACCGTTATCATATAAATATTCAACATCTTTCAACCCATATAAAGAAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGGTCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 590203-590633 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 590203 30 100.0 39 .............................. CGGACACACAACCAACGGCGGGTTCGGAGTAGGCGGATA 590272 30 100.0 38 .............................. CAGGATAACCTCATTGAGGGACCCCTTGGGTGTGATGT 590340 30 100.0 36 .............................. CTAAATAATTATATTTATTTATTCGAGAGATCTTCT 590406 30 100.0 36 .............................. TGATTCTTGTTGTTACTTCACCATACAACTCTTTTA 590472 30 100.0 37 .............................. AATCATTTATTTAAAAACATAAAAAATTATATAAAAA 590539 30 100.0 35 .............................. TGTTTTAGAAATGCTTCTTTTGCTTCTAACCTGCA 590604 30 90.0 0 ........................AA...A | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.6 37 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : ACTATTATGTTGATGAATAACTAAGAGGCATCATCGAGCGAAGCGAGATGATGCATCCGGGTATCCTAATAGGGCGGAGCCCTATGGTTGTGGATACTTCCCCATTATGTTGATGAATGACTATCTATTTTTTATTTATCTTGTTGTTTGTTTCTGTTTTTTTGATTTTTAGGTTTTTAGTTGAGGTTTCTGTTTTTTATTTGTTTTTAGTTGGTTTCGAATGGGTGGTTTGTTTTATTATTTTGTATATTTAGATGTGTTTGATTATGGAGTTTTTTTAGAGTTTTTAATTGTTTGTAGTTGTTTTTAGAAATCCATGGTTGATTAATTATATTTTATGTTTTTATGTTTTATTTATTGTTATTTTTTAAATAGAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAAAGGGGTTATTTATGGGTAGAAATTTTATAGTGTAGAAAAATATAAATATTAGTAAAAACATTAATAATAAAATAAAAAAAATTATCCT # Right flank : AAGGATATTAAAATCATTTTTTAGATGTTGATCAACTCTAAAAGAGAGAACTCAATTAACGTTAGCATATCAATAGGGCAGAGTCATATAGAACTCAGACCTCTTTAAAGGAGGGGAATATTGCGTTATTTGCATTGAAGTTTTTTCTTTAATGGTTAAAATTGGGATGATGTTTTGAAATATTGGAAGATAAAATCTTCTTTCCATTTAACGAAATTATAGATTTTTGTTTTTGAGAATTTCGATTATCACATCGTCTACTGGGCTCATTGCGTTTGCGATTTTTCCTATATTTTTTATACATTCTTCGAAATTTTTTCCAACAATTCCGTTGTTGTATGGAACGTTTGAGAATAGAGAAAGGTAGATAGAGAAAACACCTGAGGCAATTTTTAAAGCACATCCGATTTTTCCACCATCACATACAATTCCTGGAAGATTGGCAGTAAAACTTTTTATACTTTCTTCTATTCTATTTTCTCCAAAGATATAGTATGATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 9 743131-744904 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 743131 30 100.0 42 .............................. TCTTTTTCATCTATCTCTTTATACTGTATTAATACTGACTCA 743203 30 100.0 43 .............................. TGAGGAAATTAAAATACAGTTAGCTGTTCAGAATGATAACATA 743276 30 100.0 37 .............................. GTTTATATCAAATACTGATGATACTGATACTGCTGGT 743343 30 100.0 39 .............................. TATGTGTTAAGGTTTCCAAAGCAGTATGTTAAATACGGT 743412 30 100.0 41 .............................. TGGTTTAGTAAAAATGGGAGAAGAAGGAATCGATTTCCCAA 743483 30 100.0 35 .............................. CATTGACATCATGTTTGAGAGTAAATTCTGAGGGT 743548 30 100.0 34 .............................. TATGCAAGATATTCTTTATTATTGATAAAAGATC 743612 30 100.0 35 .............................. CTGGTTCATTTTTTTAAGGAATTTTTAAAAATTTA 743677 30 100.0 36 .............................. ATAAGCGTATTTGAGTTTTATGATGATGCTACAGCA 743743 30 100.0 33 .............................. CTTTTATACCGTTTGCGAGTGAATACCTTTCGC 743806 30 100.0 33 .............................. AGAGCCATTGCCCCGAATTTTTGTAGTGGAAGT 743869 30 100.0 35 .............................. TAGATTAACAAGAAAATTAAGAAATATGGGATTGA 743934 30 100.0 42 .............................. TGAAATAGCAATAGATTCACAAAACACAGTATTTATATATTA 744006 30 93.3 34 ...............GA............. TGAGATCAGGGGCAAAACTATTTATCTTTTTTAT 744070 30 93.3 39 ...............GA............. TTGATTGCATCATTTCCATCGGATTCTGTGTTGTTTCAA 744139 30 93.3 36 ...............GA............. ACATCAAGATTAACTGAAGAGGAAGTTAATGTTGAA 744205 30 93.3 36 ...............GA............. ACATCAAGATTAACTGAAGAGGAAGTTAATGTTGAA 744271 30 93.3 34 ...............GA............. ACATCAGATATATACTTATTATACCACTGTGTTA 744335 30 93.3 39 ...............GA............. TACCGTAATCTACTCCGAAGTATTTGCATAATTCACTGT 744404 30 93.3 34 ...............GA............. ACATCAGATATATACTTATTATACCACTGTGTTA 744468 30 93.3 39 ...............GA............. TACCGTAATCTACTCCGAAGTATTTGCATAATTCACTGT 744537 30 93.3 36 ...............GA............. ACTTTTGAATTTACTTAATGATGGATGGAGATCTGC 744603 30 93.3 41 ...............GA............. ATTTTATTTAGTTCTTCAACAACTCTTACAAGTTCATCAAC 744674 30 93.3 36 ...............GA............. TTATGATAATTACCCTATAAATGCATTGTTAAAAAT 744740 30 100.0 37 .............................. CTTTGTTAGAGGAAAGTAAGTTATCAGCTTGTTATAC 744807 30 93.3 38 ...............GA............. AAGAATACTCCTGCACTGCTATAAACTTGTTTAGTCCA 744875 30 76.7 0 ...............TC.T..A..AA...A | ========== ====== ====== ====== ============================== =========================================== ================== 27 30 96.2 37 ATTAAAATCAGCACGAGTCGTGATGGAAAC # Left flank : ATCTCCATATTTTTAATTTTTTCAAACGTTTCTTTTATAACATCTATCTCACGTTCCATAAATCACACCTTTTAATATCACTACACTTAAAGTTTTAACCTAACTTTTATTTAAACATAACTATTTGTTTTCTTATTTATCTTGTTGTTTGTTTTTATTTTTTTGTGTTTTGAGTTTTTAGTTTAGATTTTTGTTTTTTATTTGTTTTTAGTTGGTTTCTAAGGGGTGGTTTGTTTTATTATTTTGTATATTTGGATGTATTTAATTATGGAGATTTTTTAGAGTTTTTAATTGTTTGTAGTTGTTTTTAAAAATCCATGGTTGATTAAGTGTGTTTTTTGTTTTTATGTTTTATTTATTGTTGTTTTTTAAATAAAAGTTCGAATTGTTTTGTTATAGGGTTTATAAAGAAGAGGGGTTATCTATGGGTAGAAGTTTTATAGTGTAGAAAAATATAAATATTAGTAAAAACATTATAATGAAATAAGAAAGATTGCCCT # Right flank : AGATAAAAGAAATTTGATTAATCAACTCTAAAAGAGACAGATTGCCTAACGTTATGATATAGGAATTAGGACAGATCCTATGGAACTTAAACTTTTTAAAGGATGTTTCTCTCATTTATAATTCTTTTAATTATCAAAATCAGACCTTTTTATGAATGTTAATTCCTAAAAATTATATCAATTTTTATAAAAAATTAAGTTAAAATAGCCATCTTCAAAAAGTTTTAATTTTATTTAGAGTTGTTTTCTATAACTTTAAGAACTTCTAATCCGAATACTCTTGCGTAGTTAGGAGATTGTGCAGTTATTATATTTCCATCAACAACGACTCCTTTATCCTCATATATTGCTCCATATTTTTTTAATTCTTCTATTGCCTCGGGATCTGGGAAGACAGTTGCTTTTTTACCCTTTAGAATACCTGCTCTTGCTAAAACAACAGGAGATAAGCAAATAGCTGCAACAACTTTATGATCTTCATAAAATTTCTTAACTAAGGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGAGTCGTGATGGAAAC # Alternate repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 10 763499-764628 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 763499 30 100.0 41 .............................. ACATATTGTATTGGAAAAGATGAAATAGAAACAAATGCTGA 763570 30 100.0 39 .............................. ATATATTGTCTAACTGTTTTATTCAACTTATCAATATCA 763639 30 100.0 34 .............................. TTTTTAACATATTTAGATACAGTAGCTAATATCC 763703 30 100.0 35 .............................. AAACTTTTTTGGCTTGTTTTATAACCAACTCCATT 763768 30 100.0 36 .............................. AAGTTCATTATATCTCTGAACTGCACTTTACTGGCT 763834 30 100.0 41 .............................. TACGGTTCTATCACATAATACATATTCAATGTTTGATAAAA 763905 30 100.0 43 .............................. ATACATCACAGGAGTAGAATTTAGTAAAGCAGATAGATCATTA 763978 30 100.0 44 .............................. CACATTTTACACAAGTGTATGTTTTTCCTGCCCCTGCACTTCCT 764052 30 100.0 44 .............................. TTACATATACTTCGTTCAATCGGGGCTCGTGCCCCATCACAATG 764126 30 100.0 39 .............................. TCCCTACGAGGGCTGATTTTAACTAAAAAAAAATTAAAA 764195 30 100.0 38 .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764263 30 100.0 38 .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764331 30 100.0 38 .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764399 30 100.0 38 .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 764467 30 100.0 35 .............................. AAGGGTTCCCCGTCAAAGTCGTTGGAGACAACAGC 764532 30 100.0 37 .............................. TTAAAATAAACGATCCATTTGGTTGGGGTTCGAATAA 764599 30 86.7 0 ..............A.G.T..........G | ========== ====== ====== ====== ============================== ============================================ ================== 17 30 99.2 39 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : ATATATCTTTATCACTAAGAATCATCACTCTCACCACACACTTTCTAAACCCTACTTATTTTTATAGAATAATTTTTAAATTTTACCCCTTCCATAAATAAAAACCATATTAATTTAAAAACATTAATTATTTTATTTATCTTGTTGTTTGTTTTTATTTTTTTGATTTTTAGGTTTTTAATTTAGATTTTTGTTTTTTAGTTGGTTTTTGTTGGTTTCTGAGGGTTGGTTTGTTTTATTATTTTGTATATTTGGATGCTTTTATTTATGGAGTTTTTTTAGAGTTTTTAGTTATTTATAGTTGTTTTTAGAGATCCATGGTTGATTAATTATATTTTATGTTTTTGTTTTCTATTTATTGTTATTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAAAGGGGTTATCTATGGGTAGAAATTTTATAGTGTAGAAAAATATAAATATCAGTAAAAATATTATAATGAAATAAGAAAAATTACCTT # Right flank : GAATTTTACTGGTATAAACTCAACTTCTGTTTCAGAGGTAAAATAACCTACGTTTTGTGATAGAATCAGGAAAAAAGTTATAATTTTTAAATATTAAATTTTATACTTATTAAAATCAGATCTTGGATATTAATTTCTATCAAAAGAATAAAAAAACTAAAAAAATTAATCATTATCTGGCTTAGTGAAAAGGTGTGGATAAGGTTGTATCTGATTGAGAGTTATTATTAAAGAACTGTCCTTTAAGCATTGCAATAACAAATCTTGTCTCGGCCTTATCGAGTTCTTTTAATGAATTTCCTTCAATTATGAATGTGTTGTTTACTTTCTTAATCATTGCTGGAGTATTGGTTTTTATAAACTCAATGATCATGGTTTTGTTATTGTGTTTTAAATACTCACTTTCATTTAGTTTTAACACAGTTATTGCCTTTTTTCCGTTAGAGAAGATACTTTTAACAGTAATATTATCTCCTGATCTGTTTAACTCTACAACAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 11 888225-886913 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 888224 30 100.0 41 .............................. CTTCTAAAATAACATAACGTATATTTTATCCTATAATCCCT 888153 30 100.0 36 .............................. CTATTAAATTGTAGTTTTAATACTGTTGTATTCACT 888087 30 100.0 36 .............................. AAGATCAGCCGAAGAAATAGTTGACGGATGGATGGA 888021 30 100.0 42 .............................. CCGTTTTCTTTTTCACGTTTATACCATTTCACATATTTACTA 887949 30 100.0 34 .............................. TTTTTTAGTATCTCATCTATATTCATAATATTTC 887885 30 100.0 36 .............................. ACTGCTAAGTCAGTGTATTTATTTTGTGTCTTATTT 887819 30 100.0 38 .............................. ATGGTGCAGAAAATTTCTAAAAATAAACCCATCTAACG 887751 30 100.0 40 .............................. CTCATATATGTTGCAAATGTTATCTGTCTTTGCTTATATA 887681 30 100.0 37 .............................. ATTAATATCATCTATTTTACAAAAATAGTGTTATGAG 887614 30 100.0 34 .............................. GTAGATGATGTTTATCATATGGTCTTATAGGTAA 887550 30 100.0 39 .............................. TGTTGAAGTATGTGGTAAAAAATATAAAGTGATGATTAA 887481 30 100.0 44 .............................. TAGATTACTATATTATTGTCATACACTTTAATATTATTAAATTA 887407 30 100.0 38 .............................. AAATATATACTTGACAATTATAAGTTTAGTATTAATGA 887339 30 100.0 37 .............................. AAAGAAAAACGAGTAAAAATAGGGGGAGCAAGAATTC 887272 30 100.0 35 .............................. ATGCAATTTACAAATTAGATGAAGAGAAGAACAAA 887207 30 100.0 35 .............................. ATGCAATTTACAAATTAGATGAAGAGAAGAACAAA 887142 30 100.0 35 .............................. ATGCAATTTACAAATTAGATGAAGAGAAGAACAAA 887077 30 100.0 36 .............................. TCTGTTAAAATTAAATCATGTGATACTTGTTTGTTT 887011 30 100.0 39 .............................. CTTTTGCAATAATTTTTCAAATTCGTCGGTAATATTTGA 886942 30 83.3 0 ...............AG.......AA...A | ========== ====== ====== ====== ============================== ============================================ ================== 20 30 99.2 38 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : TCCACCGCAGGTATTGGTAGAGGAGCAATATGCATCCTAACAAACAAAAACTGCCATCTATTTACCTCAGATATTTATGCAAACCTTTTAACATTTGAAAATATAAAAGAAAGACAAAAAAGTGGGATAGAAAAAGGTATAAAAAAATTTTTAGAAATATTAAAAAATGAAGTATTTTTAGTTTAGATTTTTGTTTTTTATTTGTTTTTAGTTGGTTTCTAAGGGTTGGTTTGTTTTATTGTTTTTTATATTTGGATGTGTTTGATTATGGAGATTTTTTAGAGTTTTTAGTTATTTGTAGTTGTTTTTAGAAATCCACGGTTGATTAAGTGTGTTTTTTGTTTTTATATTTTATTTATTGTTGTTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAGAGGGGTTATCTATGGGTAGAAATCTTATAGTGTAGAAAAATATAAATATCAGTAAAAACGTAATAATGAAATAAGAAAAATTGTCCT # Right flank : AGGATATTAAAAAATCAATTTTTTAGATGTTGATCAACTCTAAAAGAGAGAACTTAACTGGCATTTATATATCAATGCTATAAAACTCCTATGGAATTTAAACTTCTTTTATCAATATTTATACCATGAGTCCAAATAAAGCCAAATACGGATCTTATCGTTAATTACATATTTAAATTTGTAATTCTAATTCCTGTTCCTTTTGATTTGTATTTTATATTCAATCCAATCAATAGGGGGGTTATCGCCTCAACTATTCTCGATTTTTCTAAATTACCGCAATCAATTGCTCTAACTCCATCTATCTGGTTGGCTAAATCAATGACCACTTTTTTTGCTTCTTCGTTATCTCCGCAGATTAAGACATCGCAATCAACAGGATTGTCTAAATCCTCTAAAACAGCATGGCAGATATTTTGAAATGCACTAACTACTTTACTTTCTTTTAATACATTTTGAATCATTTCAGCAACTGAGCCATCTGGAGGAAATAATAACCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 12 934670-935162 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 934670 30 100.0 39 .............................. ACGGTATAATCTGCTTTTTTATATCCTCAATAGCCATGA 934739 30 100.0 34 .............................. TACAGGATACGACATAAGGGTCTTTGACGAAACA 934803 30 96.7 34 C............................. TTAATGGAACTTAATACTTCTTTTTTATGTTCCA 934867 30 100.0 38 .............................. TATGTATCTAATGAATCCATCTTTTCACCTCCTCAATC 934935 30 100.0 35 .............................. TTGCTGATACGTGTTTTAACTCTCCATCCTCCCAA 935000 30 100.0 35 .............................. CTTAATATCTCAGGATTTTGTGATAAAATCCAGTC 935065 30 100.0 38 .............................. CAAGAATACTCCTGCACTGCTATAAACTTGTTTAGTCC 935133 30 80.0 0 ................TC.T..A..AA... | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.1 36 AATTAAAATCAGCACGGATCGTGATGGAAA # Left flank : CCAATAGTAAAACTTAACCTCCGATATATACCTGACGGAGAGTATTATCTTGTTGTTTGTTTCTGTTTTTTTGTGTTTTGAGTTTTTAGTTTAGATTTTTGTTTTTTATTTGTTTTTAGTTGGTTTCGAAGGGTTGGTTTGTTTTATTATTTTGTATATTTGGATGCTTTTATTTATGGAGTTTTTTTAGAGTTTTTAGTTATTTAATATTATTTTTAAAAATCCACGGTTGATTAATTATATTTTATGTTTTTATTTGTTTTTAGTTGTTGTTTCTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAAAGGAGTTATTTGGGGGTAGAAATCTTATAGTGTAGAAAAATATAAATATAAGTAAAAACATAATAATAAAATAAGAAAAATTACCCTATTAAAAACAAAGGAGGTGAAAGTAATGAAGATTTTAAGATCTTTTCAATCTCTTTATCTTTATATTAAAAACAAAGGAGGTGAAAGTAATG # Right flank : AAGATAAAAGAAATTTGATTAATCAACTCTAAAAGAGACAGATTGCCTAACGTTATGATATAGGAATTAGGACATCTCCCTGGAATTTAAACTCTTTAAAGGATGAATTTCTTTCATTTATAATTCTTTTAAAAATTTTAAAAATTAACCATCAAAAACAAAAAATCTTTATTCTTAAAGTATTAATTTAATTTTAACATAGATTTGAAGTGTAAATTAACTTTATCTCCTATTTTTACATCTTTTTGTGTATAGGCCTTTATGATCGTTGATTTGTAGTTTATTAAAACTTTTTTGTAGAGGCCATAGTCAATGACATTTAGAACTTCTCCTTCATCTCCTTTGGAGATTATAATATCTTCTGGAGCAATTGCCATGTTATTTATTATATTGAATCCTAAAAATTCCGCAATTTTTTTGTTGGTTGGGTGTTTTAAAATCTTTTTACTTCCGAAAGATATTAACTCTCCATTTATGAAGATTCCTATTTTTTCTCCTAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTAAAATCAGCACGGATCGTGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 13 1092182-1092483 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1092182 30 100.0 36 .............................. TCTAATAATGATTTCATAACCACATTATATATATAC 1092248 30 100.0 37 .............................. ATAAAATTGATATTATGGACTTAGAAAATGAATTTAC 1092315 30 100.0 43 .............................. GGAGGGTTAAAATGACAAGTATTTTTTTAGAACTTAATAAAAC 1092388 30 100.0 36 .............................. GTTGTTCATCCGTTATATATGTATCCTTTATTACTA 1092454 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 100.0 38 ATTTCCATCACGATCCGTGCTGATTTTAAT # Left flank : AGGGCATGTTTTATTTACCATATCTGATGAAACAGGAGAGATCGGCTGTATTGCCTACGAACCTACAAAAAGATTCAGAGATATTGTTAGAGAGTTAATTATTGGGGACTATGTAGCCGTTTATGGAACAGTAAGAGAATATCCCCTTGAAATAAATATTGAGAAAATAAAAATCCTAAAATTGGCAAAAAAATATATTAAAGATAAAAAATGTCCAAATTGCGGAGGAACATTAAAATCAAAAGGGAAAAAACTTGGCTACAAATGTAAAAAATGCAAAATCATAATTCCCTACGAAAACATAAAAAAAATAGAAATTGAACGACAGATAAAAATCGGATTCTACGAAGTTCCAGGGTCTGCAAGAAGACATCTCAGTAAGCCAATTCAGATTATTGACTTCAACCTTTTAGAAAATGATAGTTAAAGTTTTAATTACTTTTCTAATAACTATTTTTTATAAAACGGTATTAACAGAGACCGTCGCATTTTCATTCTTA # Right flank : TAGGGTAATTTTTCTTATTTCATTATAATATTTTTACTTATATTTATATTTTTCTACACTATAAAATTTCTACCCATAGATAACCTCTTTTCTTTATAAACCCTATAACAAAACAATCCAAACTTTTATTTAAAAAATAACAATAAATAAAATATAAAAACAAAAAACACACTTAACTAACCGTGGATTTTTAAAAACAACTACAAATAATTAAAAACTCTAAAAAAACTCCATAATTAAATACATCCAAATATACAAAATAATAAAACAAACCACCCCTCAGAAACCAACTAAAAAACAAATAAAAAAACAAAAATCTAAACTAAAAACTCAAAAATCAAAAAAACAAAAACAAACAACAAGATAAATAGTTATGGGGATATTTCATCTACGTAGGGAATATCAGACATATTCTCTTCCCAAATTGCCATACATGAGTCAAAAATATTCTGTATGTTTCTGAATGTGTAGCATATTTTCACAACCTTTACATCTTTTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCATCACGATCCGTGCTGATTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 14 1102592-1101823 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1102591 29 100.0 37 ............................. GCATTATGTTGATTAATATCACAGCAATTACTATTTA 1102525 29 100.0 39 ............................. GAAAACATCAAGCGAGTATTCAGATGCATTATTAAAAAA 1102457 29 100.0 41 ............................. GTTGGTTGCTGAGCTGTTATATGTTGCCCTTACTGTATTAA 1102387 29 100.0 41 ............................. GTTGGTTGCTGAGCTGTTATATGTTGCCCTTACTGTATTAA 1102317 29 100.0 41 ............................. GTTGGTTGCTGAGCTGTTATATGTTGCCCTTACTGTATTAA 1102247 29 100.0 41 ............................. GAAACTTCTTAAATGCTTTTGAAATCTCTTTTAACGCTTCT 1102177 29 100.0 39 ............................. ATATGCTTGAATCATGCTTGGATTCAGCTCTAAAACTTT 1102109 29 100.0 41 ............................. ATATAACTCAGGAAGATGGTCTCTGATTACAGAAAATAATA 1102039 29 100.0 43 ............................. ATTACAACACGTCATCACGACTACAAATCCAAGGAGGATTATT 1101967 29 100.0 37 ............................. AGAACCTTTTATGTGTGCAACTATTTCGACAGCTTTG 1101901 29 93.1 20 ....................T.......G ATATAAAAATTTTAAAATTA Deletion [1101853] 1101852 29 72.4 0 GG......A.A..T....A.G....A... | A [1101833] ========== ====== ====== ====== ============================= =========================================== ================== 12 29 97.1 38 ATTAAAATCAGACCTCTTCGAGGATGGAA # Left flank : CCTTGCGATTTTTTTAAGCATGCTGCCACCAATAATTTATCATTATTATTAATGACAAATTTTAAGACATTGAGTATATATAAGTTATGCATCTAATATTTATATTATTAAACATATGGACTATTTGTTTTCTTATTTATCTTGTTGTTTGTTTCTGTTTTTCTGATTTTTTAGTTTTTAGTTTAGATTTTTGTTTTTTATTTGGTTTTAGTTGGTTTCTAAGGGTTGGTTTGTTTTATTGTTTCTTATATTTGGATGTTTTTGATTATGGAGATTTTTTAGAGTTTTTAGTTATTTGTAGTTGTTTTTAGAAATCCACGGTTAATTAAGTGTGTTTTTTATTTTTATTTTATATTTATTGTTATTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAAAGGGGTTATCTATGGGTAGAAATTTTATAGTGTAGAAAAATATAAATATTAGTAAAAACATTATAATGAAATAAGAAAAATTATTCT # Right flank : ACTCTGAAAAGATAATTATATAATTATTTTGTAAATGAATTCGTTTAATTATTATTTTTTCTATTTAATAAAAGAGCAGATACTTTCGAAACTTTTTTATTGTTTTCAGTAGTTAATTAAGTTAAAAAGTTTATTTGGGTGGTTTTATGATTGTTAAAGATTATGAAGAGTTTTGTAGATTGTTAGATTCATATATATGTAAATATAGAGGAAAATTTGGATGTGTGATAACCTTTAATGGATTTGTTAGAGAGTATGATTTAAAAGATGGAGAAAAAATTTCCACAGATGGAATGTCTATTGAAAAAGACATTTTTAAAAAATTAGAGCCGATTTTAGAAGAAGCAAAACGTAGATTTGGTATAATAGATGCCTTATTTTACCATAATACTGGATTTTTAAAAGTTGGGGAGAGAATTGCATCTATTGCAGTTTTTGCAAAACATAGGGGGGAGGGATTTAAGGCATTGGAATTTATTGTTGAAGAGATGAAAAAACAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGACCTCTTCGAGGATGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 15 1134676-1135852 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1134676 30 100.0 35 .............................. CCCCGTAACCCTTGTAGCAGTGCTTCTCCATGATG 1134741 30 100.0 35 .............................. GTAAATACAATGAAGGTATAAAGTATTTAATAGGT 1134806 30 100.0 44 .............................. CTTTAATTAGTAAATGTCATAATGATACTGATACTGTAATATTT 1134880 30 100.0 40 .............................. TAATAGGGAGCTGTATATATCGCATCAAGGTCTTTCATGC 1134950 30 100.0 45 .............................. GTATTTATTTGCGGTTATAAAACATAAAGAGGTAGTAAAAAAGCA 1135025 30 100.0 36 .............................. GATAGGATTTCCATCCTTATCAAATTCTATCTCTTC 1135091 30 100.0 36 .............................. TGCATTGTTTAAAATATATAAATGGAGTGAAGGATC 1135157 30 100.0 40 .............................. AGACAGACGACTATTCAGAATTTATAGATCTCTTCGACGA 1135227 30 100.0 37 .............................. TTGATTTATTACTTCTATTATATCCTCAGCTAATTTC 1135294 30 100.0 35 .............................. CCCCGTAACCCTTGTAGCAGTGCTTCTCCATGATG 1135359 30 100.0 35 .............................. GTAAATACAATGAAGGTATAAAGTATTTAATAGGT 1135424 30 100.0 36 .............................. TGCATTGTTTAAAATATATAAATGGAGTGAAGGATC 1135490 30 100.0 40 .............................. AGACAGACGACTATTCAGAATTTATAGATCTCTTCGACGA 1135560 30 100.0 37 .............................. TTGATTTATTACTTCTATTATATCCTCAGCTAATTTC 1135627 30 100.0 36 .............................. AGGACTTCTGTAATCTACATAACTTAATTCAATAAC 1135693 30 100.0 34 .............................. ATAACTGATCTTACTAAAAATATAAGAGAAGAGA 1135757 30 100.0 36 .............................. ATAAATAAGTATTTTCTATATGATGCTAACGAAAGA 1135823 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 18 30 100.0 38 GTTTCCATCACGATCCGTGCTGATTTTAAT # Left flank : GACAATATCTATTGATATATTTGAAAAAGAACCAAATAAAAAACTACTTGGCCCCTCAATATTAAACGAGGTTTACGTTTATGATGGAAATGTATACGGCATTCCACAAAACTATGAAGGAGTTAAAGAGGACTACTTGCCAATATTAAAAAAAGCAAAAGAAGAAGGAGTGTCAACCAATATAACCTATTTGGATGGAATAATTTATAAGTTAGTTTCTAAAATTGAGGAAGCATTACTCTCCAATATAGATGAGTTTAAATATAGAGTTCCAATAGTTAGAAGTTTAAGCGACATAAATTTAAAAATAGACGAATTAGCCCTAAAACAAATAATGAGCGAGAATAAGATCATAGATGTTAGAGGTCCCGTCTTTTTAAATGCAAAAATTAACATAAAATAAACATTTTTAACTTTTTTTATTTATATTGTTAATTTAACATCTAAAAACCTATTTTAATAAATATTGCCCAATATTTGAAAATTATAACTTTTTTCCT # Right flank : TAGGGCAATCTTTCTTATTTCATTATAATGTTTTTACTGATATTTATATTTTTCTACACTATAAGATTTCTACCCATAGATAACCCCTTTTCTTTATAAACCTTTTAACAAAACAATTCAAACTTTTATTTAAAAAATAACTGCAAATAATCAATAAAAATAAATAGATCAAATAATCAACCATGGATTTCTAAAAACAACTGTAAATAACTAAAAACTCTAAAAAATCTCCATAATTAAATACATCTAAATATAAAAAATAATAAAACAAACCAACCCTCAGAAACCAACTAAAAAACAAATAAAAAACACAAAATATAAACTAAAAACTCAAAAATCAGAAAAACAGAAACAAACAACAAGATAACATCTCTAAATTTTAAAAGGTCGTATAAATATTTAAATTCTATGCATATATTTAAAGATGTCTTCATGCTGAACAATAACTTGGACGCCGAGATTTTCTCCTACATGTTCCAATTCTTTTTTTAATGTGGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCACGATCCGTGCTGATTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 16 1372554-1373207 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1372554 30 93.3 41 ...............AG............. CCTGTTATACAAGATTTTTACGAATTATCAGTAAATACATT 1372625 30 100.0 41 .............................. ACAATTAGACAAGCACAGCAACAAAATATGATGTATCAGCA 1372696 30 100.0 40 .............................. GAGATACTTACAACAATAAAAGGAAGGAATAACTATCCTT 1372766 30 100.0 40 .............................. ATAAACGAAGATGCAAAGAGAAATATGATTTACGGATTTT 1372836 30 100.0 35 .............................. GAATCAATAAGATTAGCTAAGGTATCCAACAAATT 1372901 30 100.0 39 .............................. CCAATATTCACTGTGGTATTTATGTTTTGATAATTATAT 1372970 30 90.0 39 ...............AT............T GTTCTAAGCCACTAACATCTATACTATGCTTTCGAGCTA 1373039 30 80.0 41 ...........AC.TCT...G......... GTTATATATTACTTTATGTTTGTTATATATTATGTGAATCG A [1373058] 1373111 30 76.7 35 ...........AC.TCT...G........A CTGAATTATCTCAATGTCTCCAAGTTTTTCTCTTA A [1373130] 1373177 30 76.7 0 ...........AC.TCT...G........T | A [1373196] ========== ====== ====== ====== ============================== ========================================= ================== 10 30 91.7 39 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : GACACTTTCGGACGAATGATATAATCTTCATGATAAATAATAGCCGACGTTGGTTTTAAAAATATTATTGGATAATCAGGTAGCTCCATATTAAGTTCTTTTGCATGATCCACATAATTCAACCCAACACATACAATTTTCGTCGGATTAATTTCCATTTATCTCACCTTTATATTTATACCATCTTTATTGCAAACTACGTCTATATAATAATTATCCTTGGCATGTATTTTTATCTTGTTGTTTGTTTTTGTTTTTTTGTGTTTTTAGTTTTTGGTTTAGATTTTTGTTTTTTATTTGTTTTTAGTTGGTTTCTGAGGGTTGGTTAATTATATTTTATGTTTTTATATTTTATTTATTGTTGTTTTTTAAATAAAAGTTTGAATTATTTTGTTATAGGGTTTATAAAGAAAAGGGGTTATTTGGGGGTAGGATAATTATGGTGTGGAAAACTATAAATATAAGTAAAAATATTATAATGAAATAAGAAAAATTACCCT # Right flank : TCTTGGTGGTATGTTAATAACTCCTCCATCTTTTTTTATTATATTAAAATCAGACCTCTTTGGGAAGAGAATACTTTAATCATTACTTTTTTCTTAAATTAATATTACTAACTCTAAAATTAAACATCTTTCGATGATCTACACATCCGAGTGTACGTGAAGTTTTGATCAACCCCCCCTTTTGACAAGAAAAATTGTAAATAATAAAAAATTCAAAAATGAAAAAATAGACAAAGATGCAACATTAAATTCCATATGAAAAGTAGTAAATAATAAATAATAATAAATAATAGAGTAGTTAGAAGAAATAACACACATAACTGTAAAAAATAAGAAATAAAAGTGGGAGTAGGGACTATGATGTTGATTGCAATCTCTGGTGTCATAGCAGTTATATCATTTGTATTTTCATTATTTTTTAGTTATTTTTTAATTAAAAGGATGGTAAAATTTAAATATGGATTTGATCTGCATAAAAAAGACAAAATTAAGGTTCCAGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 17 1403439-1403067 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1403438 30 100.0 38 .............................. GCCATAAATTCTCTTAATTCTTTGATTATCTGTTTAAT 1403370 30 100.0 41 .............................. GATAATATTGACTCATAATCCAATGACTTATCAGATATAAA 1403299 30 100.0 37 .............................. TTTTTTTACCACCTAATATAATTAATACATTCTGAAA 1403232 30 100.0 34 .............................. TTCATACTGGATTGATAATAATACAGCTATGTGG 1403168 30 100.0 42 .............................. TTTTGCAGTTATATAAACATCAGCATCAACTACACTATACTC 1403096 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 6 30 100.0 39 ATTAAAATCAGACCTCTTCGAGGATGGAAA # Left flank : AATGGTAGATTATGGTGGTTTATTAGGAAGTGCACCAATCATGAAAGTTAATAAATACTCCTCAGAAAAATTTATCAAAAGAGGAGGAAGAATCCCAGCTCCACTTCAAGCATTAACTAATTAATAACATATATTTTTATCTTGTTGTTTGTTTCTGTTTTTTTGTGTTTTGAGTTTTTAGTTTAGATTTTTGTTTTTTATTTGTTTTTAGTTGGTTTCTGAGGGTTGGTTTGTTTAATTGTTTCTTATATTTAGATGTGTTTGATTACAGAGATTTTTTAGTGTTTTTAATTTATTGCAGTTGTTTTTAGAAATCCATGGTTAATTAAGTGTGTTTTTTATTTTTATTTTCTGTTTATTGTTGTTTTTTAAATAAAAGTTTGGATTGTTCTGTTGTAGGGTTTATAAAGAAAAGGGGTTATTTATGGGTAGAAATTTTATAGTGTAGAAAACTATAAATATTAGTAAAAATATTATAACGAAATAAGAAAAATTACCCT # Right flank : CTTCAAAATTTCTAATCTTTTATCATTTTTATTTTATTAAAATATTGAAATCAACTGTCTCATAATAAAAATATCTATTATAAAATTGTTCTAAAAATTCTTAATAAAATTTTAGCAAACAACTTTTTTCATTAATTAAAATTAGATCTTGGACGTTAACTGCTTTTTGGAAGAGGAAACTTAATGCTCTTTTAAATTTATAATAAACTTTTCTCTTATGATTAGACGTTTACTAAAAAAGTTGTTTTAGAGATAATAAAATTATTTTTATTAACAAGTATATTAAAAAAAGAGAGTAATTATTTTTAGAGTGTATAATATAATAAAAACAAACTCAAAAAATAAAAAAGTTAATCGTGTATTCCTTTTTCGGTTATTCTGAACATTGCCTCAGCATCTGGCAAGTGTGGAGAGTCATAAAGTTTAGCAACTCTTTTATCTCCTTTTGCTTTTCTTAAAAATATTCTAAATGTTGCCGCATGCCCAACAATATGCCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGACCTCTTCGAGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 18 1709449-1708464 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1709448 30 100.0 36 .............................. TATTCATTCTACCACCTTTTTATTTTTTTTATTTTA 1709382 30 100.0 42 .............................. GTTAGAAAAAGATTATTTATACAGAGGAATTTATTATTAAAA 1709310 30 100.0 38 .............................. ACTCATGATAATATTCACAAGTGTGTTTAATCTCCACA 1709242 30 100.0 37 .............................. ACCAAAATATTTATACTATGTGGCGTTAAATTTCCAA 1709175 30 100.0 45 .............................. TTATCAAATTCATTAAAGCTTTTTTCTTTTGCTACACAGTTTTCA 1709100 30 100.0 39 .............................. CTATTTCTCTTATCAATTTGTTGTATTCGATTGTTTTAT 1709031 30 100.0 36 .............................. CAGCCCCACCCGTTCCCTCACGGTACTTCCCTATTA 1708965 30 100.0 37 .............................. TGATGCTTATATGGTTTTATATCTTGTAAAAGTTCTA 1708898 30 100.0 36 .............................. AAGATTACATTTGCTCCTTTAATGTAGTTCCAAATA 1708832 30 96.7 36 ................G............. GTTTGTAGTATGTAAATTCTTGGAACACATTAATAA 1708766 30 96.7 43 ................G............. GGAACCATGCCACTGCTATGGTCCAGGGAGTAATACCACAATG 1708693 30 100.0 38 .............................. ACATAGAACAGATTAAAATAAGTGATTTAAAAAGGAAG 1708625 30 100.0 35 .............................. AAGGGTTCCCCGTCAAAGTCGTTGGAGACAACAGC 1708560 30 100.0 37 .............................. TTAAAATAAACGATCCATTTGGTTGGGGTTCGAATAA 1708493 30 86.7 0 ..............A.G.T..........G | ========== ====== ====== ====== ============================== ============================================= ================== 15 30 98.7 38 ATTAAAATCAGCACGGATCGTGATGGAAAC # Left flank : GCAGATGAAATTGAGAAAGTAGATGGAATCTTTATTGTTGTAAAAGATAAGGTTGGAATAAAAGGAAAAATTCCAGAATTAATAAGAACCAATAAAAAAATAACATTAGGAGAGTTGTTTGACGTTTATTAGTTATTTATCTTGTTGTTTGTTTTTATTTTTTTGTGTTTTGAGTTTTTAGTTTAGATTTTTGTTTTTTATTTGGTTTTTGTTGGTTTCTAAGGGGTGGTTTGTTTAATTATTTTGCATATTTGGATGTATTTGATTATGGAGTTTTTTTAGAGTTTTTAATTTATTGAAGTTGTTTTTAGAAATCCATGGTTGATTAAGTGTGTTTTTTGTTTTTATTTGTTTTTAGTTGTTGTTTTTTAAATAAAAGTTTGGATTGTTTTGTTATAGGGTTTATAAAGAAAAGAGGTTATCTATGGGTAGAAATCTTATAGTGTAGAAAAATATAAATATTAGTAAAAATATTATAACAAAATAAGAAAAATTATCCT # Right flank : AATTTTACTGGTATAAACTCAACTTCTGTTTCAGAGGTAAAATAACCTACGTTTTGTGATAGAATCAGGAAAAAAGTTATAATTTTTAAATATTAAATTTTATACTTATTAAAATCAGATCTTGGATATTAATTGCATAACTTAATGCATCTGTGATATATCAATTTATGGAAATATTGAATTTGTTAGAATAGGTTTATTTTATTAGTAATATAACTCTATTTTATACTACAACAAAGGATATGGTTATTTTAGAAGATTTTAAATTGGATTTTAAAATAAAAAATTAAGTTTTTGACTTTTTATATAAAATATAAGTAAAGAAAGCAGTTATGATTAAATAAACATTTAAAGGTATTGGGGCTTTTGTTGAAGTTGTTGATGTTGTAGTTGTATTTGAGGTTATATTTGATGGTGGCGGGAAATCATAGTGTATTACATCAACAATACATGCAATATCACCACTTTGTTGATAAGAACCCCAATTTAACTCACCAGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGGATCGTGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 19 1714762-1714106 **** Predicted by CRISPRDetect 2.4 *** >NC_013407.1 Methanocaldococcus vulcanius M7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 1714761 29 100.0 37 ............................. CTCCTATAATTACTCCAACCACCAACCATCTGTCCTG 1714695 29 100.0 42 ............................. CAAAGCATAAGTTGAATAGTCAAGTATTAGATATTTTTTTCC 1714624 29 100.0 40 ............................. CTTTATTATATCGTTTATATCCTTCATTTTATCACTAAAA 1714555 29 100.0 36 ............................. TGACTTTCGTACCAACATTCTCTACATTGTTCACAA 1714490 29 100.0 42 ............................. TCTCTTATAGCATCCCTTATGCTTTGTCTTATAACATCCCTC 1714419 29 100.0 41 ............................. TCTTCGCTAAAAAAGATAAATTTATGCGTCTGTAAAATTAA 1714349 29 100.0 51 ............................. TTTTTGTAGTCATCAATAATGCTGACATTAATTGGCTTCATATTGTCTCTA 1714269 29 100.0 35 ............................. TCAAAAAGATTTATGTTGAAATTGAAAATCGAAAA 1714205 29 100.0 42 ............................. CCTACATTCATTATACTACCGGCAGCTATAATACCTAATTAA 1714134 29 89.7 0 ...............GA.......A.... | ========== ====== ====== ====== ============================= =================================================== ================== 10 29 99.0 41 ATTAAAATCAGCACGAGTCGTGATGGAAA # Left flank : TCATGGTCTCAACTCTTGATATTTTTTTCAAGTTTTTAAAATAGTAAAGCCATATTAATAGTTCGTTAAAGTTATTATAAATAAATTTTTATTGAATATTTTATTAAATCCGATTTTGGAATATTTTATAATGCACGTATTTTTATCTTGTTGTTTGTTTTTGTTTTTTTGATTTTTAGGTTTTTGGTTTAGATTTTTGTTTTTTATTTGTTTTTAGTTGGTTTCTAAGGGTTGGTTTGTTTTATTATTTTGTATATTTGGATGTGTTTGATTATAGGGATTTTTTAGAGTTTTTAATTGTTTGTAGTTGTTTTTAAAAATCCATGGTTGATTAAGTGTGTTTTTTGTTTTCTATTTATTGTTATTTTTTAAATAAAAGTTTGAATTGTTTTGTTAAAAGGTTTATAAAGAAAAGGAGTTATCTATGGGTAGAAAAATTATAGTGTAGAAAAATATAAATATAAGTAAAAATATTATAATGAAATAAGAAAAATTACCCT # Right flank : CTACTTTTTAACATTCTAAAAATAGATTAAAAGATATGGGGGTTAAAATCAGACCCTTGCAGAATTTTTGTTAGATGAGGAGTTAAAACCTATGTATATCGAAAAATGAAAAATCTATATTGAAAATCTAAAAAAGAGATATTTGGGAGAATAAATATATGATATTGAAATAATGACCTCATTGGATAAAATACTCCAAAAACTTTCAAAAAGAGATATAAAAAATTATGATCAATATTGAAGGAAATGGAAGAGATTGTTCAAAATCCTCAGCACTATAAAAACCTAAAATATCCTTTAAATGATTTTAAACGAGTTCATACCGATAAAAGCTTTGTTCTTGTTTTTACTGTTGATGAAAATGATAAAAAAGTTATTTTTCGTTGGTTGATCACCAAGACAACATCTTATAAAAAGAAGGAATTATTTAAAGATAAAATTGTTGAAGTTGCTCTAAAATTCTTTTTTATTCTCTTATTTTTGATTAATTCTTTCTCAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGCACGAGTCGTGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //