Array 1 342-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDI010000020.1 Weissella cibaria strain 1001713B170221_170320_B3 NODE_87_length_12089_cov_20.8272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 341 36 100.0 30 .................................... GATAAAAAGAACTTGCTGACGTCACTCGAT 275 36 100.0 30 .................................... ACTGAGATGGAGACAGTGGAATCAAGGATA 209 36 100.0 30 .................................... ACGATGCTTCGTAATGAGTTCCAAATCGTT 143 36 100.0 30 .................................... CCGGTGAGAGTGTCTGATGTGATTGATTAC 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGTGTCATGTTGAATAGAATGCTTCTCAAAC # Left flank : CAAATTATTAAGGATGAATTGGTTGAATTTGAGATAGATTTAGTTAGTGATGAAATTTTATTGACTGAGGCGCTTAAATCATTGGGGGTTAAAATCGAAATTGTGTCCGATACTATATTTGAAAGATTTTTTGAGATCATTCAGGTATTCAAGTATTTGAAGGCAAAGGAATTACTGGTAGTAATCAATGCTGGTGTTTATTTTTCAAAGTCTGAAATAGCAGCGATTGCAGAATACACTGAACTTCAAAATATGAATATGTTGATGATCAACTCAGCGAAATATGAGGGCGTAAAAAGCAGATATGTATTGGACGAAGATTTTGTTATCATGCATGAACACATGGTATAATTAATGTATAAATTCAAAAGTTAAATTGATCTTTGACAAGTTAATTATAAGGCGTTCTATTCTGAAAACTCGCCAGGTTTAGTGAATTAATAGCTGTTATAGCCACTTAAATTAAACGTTTCGTATTTTGAATAAAAATACATTCCGAG # Right flank : CTCACCGGGATAACCGGGTGACACGGGTTTAGTTTTAGTGTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGTCATGTTGAATAGAATGCTTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 42-539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDI010000110.1 Weissella cibaria strain 1001713B170221_170320_B3 NODE_444_length_29773_cov_20.2893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... CGGCACGGATTGGAGGTAACTTCTTATCTC 108 36 100.0 30 .................................... AACAAATGCATTCACAATAGATTGAACGGC 174 36 100.0 30 .................................... AACTTTGATGGTGCCGTCCTCGTTAAATGA 240 36 100.0 30 .................................... CAATTTCGTATACTTTACCAGCCATTCGTA 306 36 100.0 30 .................................... TATAAGCTTGTTGTCCGAACTTAGTAAAGT 372 36 100.0 30 .................................... TGCCAACAGATGAGCGTATCCAAGAGTTAA 438 36 97.2 30 .............................T...... ACCGGCCAATGGTGGACATGGTGGTCTACA 504 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTAGTGTCATGTTGAATAGAATGCTTCTCAAAC # Left flank : GCTTCTCAAACTCACCGGGATAACCGGGTGACACGGGTTTAG # Right flank : CCAAATCGACGGTTCAGATAGGAAATGTAACTTGGGTATGAAAGAATATTTGAGGGTAATAAACCATGAACGATATTGAGTTCATAATGCATCCTGAATGGTGGGCTAAAGAAAAAGGGCCTAATCATACGTTGCTGCTAATCGAAAACGCATCAGATGAAGCAAATAAGGCGTTTGATGAGTATCAAAGGTTACTAAAATACGTGGATGAGAACGAAATAGATTTTTAAGCATCTGCATTGATTTGTAGGTGTTATTTCTGTGGGCTTTTTCTGACTTGTGTGTGTCGTTAAACTGCTCTTTTTATACACAAATACTGGGTGAACCTGTAAAAATTCGTGTTTAAGTGTCGTGTTGAATAGAATACTTTTCAAATTGGATCTATGTAAACAATGTTGGTTGTTAATATAATTGGGAATCCATACAGAGTCTGGGATAGAGTCGTTTTAGTACAAAAGAATAGGCCGAAGAACTACGCGTATCAAGCGCAAGTTCTTCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGTCATGTTGAATAGAATGCTTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //