Array 1 5487-299 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULX01000051.1 Inconstantimicrobium porci strain WCA-383-APC-5B seq51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 5486 29 96.6 36 .......A..................... CTTCTTGCGAATATTGTTATAAGCTCTGTTTTATGC 5421 29 96.6 37 .......A..................... TTGAGGAAAAGTGCATACCTGAATTTGATGGTGGAGA 5355 29 96.6 37 .......A..................... TATATATAGGGTTGTCCTTATTTTCAACTGCTATAAG 5289 29 96.6 37 .......A..................... TCATATGAAATAGCAAATAAAATGAATTATACAGTAA 5223 29 96.6 36 .......A..................... TGCTCAGTAAAGGAAAACTTAAGAAGAGATATAATA 5158 29 96.6 36 .......A..................... TTTTTAGAAGGTGTTTAGAGTATTCTTGCATTACAT 5093 29 96.6 36 .......A..................... CTAACATAAGTGTATCCAAAGCCTTTAGTATCCTTG 5028 29 96.6 35 .......A..................... TCAACAAATTTACAAGTTACTGCTACTGGTAATGA 4964 29 96.6 36 .......A..................... TAGTAAAGATCATCACTAAGCAGTGCAAATTCCTGT 4899 29 96.6 36 .......A..................... ACCATTTCTGTTTTGTACCTGTGGGATATGGATATG 4834 29 96.6 36 .......A..................... AAAACTGATTTTCAGACACTTGAAGAAAAAGTAAGC 4769 29 96.6 36 .......A..................... TTTTTATTTCGTAATTCAGATTACATATATTATTAT 4704 29 96.6 35 .......A..................... TATTGGAACAAGGCTTTTCAGCGAAAGATATTATA 4640 29 96.6 37 .......A..................... CAATTATTACAGATGGACAATACACATAACAAAGAAA 4574 29 96.6 36 .......A..................... AATACAAAGCAATAAGGCTATTGAGTATATAGTTAA 4509 29 96.6 36 .......A..................... TATATAAGTATTACTTTTACTATTTCCTACATTAAC 4444 29 96.6 36 .......A..................... TATGCAGCATATCTTAATAAAAGCACTTCAAGAAGA 4379 29 96.6 36 .......A..................... TCTTTTGAACTTCTTTGCAGTTGGTAGTTTTGAAGA 4314 29 96.6 36 .......A..................... GCAGCACAAGGTGCAGTAAGTAACCTTAATGGCATG 4249 29 96.6 37 .......A..................... CAAGATTTGGTAAATATTGCCGACATTATCAGCAAAA 4183 29 96.6 36 .......A..................... GAAGATTATCTTATCGTAAAAGAAGAAGCTGACAGC 4118 29 96.6 38 .......A..................... CTTAAAGAAATAATCAATATTAATCACTTACAAGAAGG 4051 29 96.6 37 .......A..................... AGAATAGTAGCAGCTATTTTTAGAGCTTTCGCTAGTG 3985 29 96.6 38 .......A..................... TTGTACCACATTGGATTACTGCCATAAAAATTATTCCC 3918 29 96.6 36 .......A..................... CAGTGCCATGCAGCTTGATTTTCTTCGACTACTTGA 3853 29 96.6 37 .......A..................... AACACATTCTTGCACACATCACGCTTAAATTGTACGG 3787 29 96.6 36 .......A..................... ATTATCGCCCATTTTGTCTTATCTCTTTGATTTAGA 3722 29 96.6 37 .......A..................... ACAGTCCTGTCTACACCTTTTAATACTTCAAATTCAA 3656 29 96.6 36 .......A..................... TATTGTATTAAAGTAACAGAAGATAAAGCTATTTAT 3591 29 96.6 36 .......A..................... TGTCTGTAGAAAAAACAGTAGGTGCAATAGAACCAT 3526 29 96.6 36 .......A..................... CTTAAAAAGCATAAAGACAAGTATAGCAGGGAAGAT 3461 29 96.6 36 .......A..................... CTTATATGGGCTTTATTGCATAAAAAAAGAGACTAG 3396 29 96.6 37 .......A..................... GAATTAAAATTTATACAAAATACAGGTACTGCAACAA 3330 29 96.6 37 .......A..................... AACTAGCACAAATGGAAGCTGTACTTAAAAGTACAAA 3264 29 96.6 36 .......A..................... TGATACTTCATAATTTTTATAGAATATTGCCTGTGC 3199 29 96.6 36 .......A..................... CCAATATCTGAATAAAGTCGGCTCCGTACTTTTCTC 3134 29 100.0 36 ............................. GCTGGAAGCAGCTAGTAAAACAGGATCGAGCGGGTG 3069 29 100.0 37 ............................. TTATAATAATAATTGTAGGGAGGAAATAAAGATCTCC 3003 29 100.0 37 ............................. AGTGAAATAGATGTTGAAGAGTTAGAAGGATTTCAAG 2937 29 100.0 37 ............................. ATGTTGTAACTTTGTACTATTGAATAGCCCTTTGATA 2871 29 100.0 37 ............................. TCGTGAAGCTGACTTGCGGGTGTGTAGCAATTTTCCT 2805 29 100.0 37 ............................. ACTTAGAAGGCGCAGACTTAATAGGTGCAGACTTAAG 2739 29 100.0 36 ............................. ATACAGAGCTTTACAGAGAGAGATAAGTAAAACAGA 2674 29 100.0 36 ............................. GAGCAATTGCTCCTTCATCTTCTGACTGCATAGCCT 2609 29 100.0 40 ............................. ACGACTGCTATATTTTCGTCATACATATCATCAATTGCAA 2540 29 100.0 36 ............................. ACAGGATATGAAGAAATAGTTACAATGCAATCTAGC 2475 29 100.0 36 ............................. TTATACGAACCTCCCAAAATACTACTTAAATAGTTC 2410 29 100.0 36 ............................. AAAACACCTGCTGAATGGCTTTTTGAAATGGGTAAA 2345 29 86.2 36 ........................C.TGA ACACTAGTGTTAGAGATACTTTTATATGCTTGTAAA 2280 29 100.0 36 ............................. ACAATGTTTCCAATAAAGAAGGTGATAAATAATGAA 2215 29 100.0 36 ............................. TAGCTTTTGTAATAGCTTTCTGCAAGGCAGCCGGGA 2150 29 100.0 36 ............................. TTTCTTTAGATTGCTCTAAAGCTTTTTTATTAGCTT 2085 29 100.0 36 ............................. ACATTCTTAATTAACATAGTTAAGAACTTTAAGGTA 2020 29 100.0 36 ............................. TATTCTTCAGAAAACCATTTTCCAAACTGGTCTTGT 1955 29 100.0 36 ............................. TCTAAAAATGCATATTCTAGATCTACATCTGTTAGA 1890 29 100.0 36 ............................. ATAAGAAGCTTTTTGTGCTTCTTCTGAATTTATAAT 1825 29 100.0 36 ............................. AGATGATACAGTGTATTGCTATATAAATAGCCTAGA 1760 29 100.0 36 ............................. TCCCATCGCTGTAGTGCCTCCGTATATGCATGCAAA 1695 29 100.0 36 ............................. CTCTTTCTTCAATTCCTAAAAAGTTCTTGATTCTTA 1630 29 100.0 36 ............................. GTTCATTATCTTCACTTATAGAATTGAAGGCAGAGC 1565 29 100.0 35 ............................. TGCACTAATTTACTTTATTTTATTTTTTATAATAT 1501 29 100.0 36 ............................. ATTGTTTAACTAATTTAATTTTTTCGTATAAATCTT 1436 29 100.0 36 ............................. ATGGTTTTCGGTATTTTCTTACTATACAAATAACTC 1371 29 100.0 36 ............................. ATGGTTTTCGGTATTTTCTTACTATACAAATAACTC 1306 29 100.0 36 ............................. ATAACATTATATAGTATTCAATACCACATAACACAA 1241 29 100.0 36 ............................. TTGATGGGTACGAAGATGTGTACAATATGGAAGTTG 1176 29 100.0 36 ............................. ATTACATAATAGCCTTCTGCGGGTTGTATCATAACT 1111 29 100.0 37 ............................. AAAGAAATCTATGAGAATAAGATTAAGGACTTCATAG 1045 29 100.0 36 ............................. CAGTAAGGACATGAAAGATAATTATTTTTTCTTTTA 980 29 100.0 36 ............................. TCAATCTTTCTTTTATCTTCGCCAAGAACGTCATAA 915 29 100.0 36 ............................. ACACTAAAAGCGTTTATTTTCAACTTAATAGAGCTG 850 29 100.0 36 ............................. TTTTCCGGGGTTACATTTCCCACACAGACTTTTTAA 785 29 100.0 37 ............................. TATCTTTTTTTATCATTATAAGCTATTACATTTACTT 719 29 100.0 36 ............................. GCGAAAGTAATTCACCAGGACACATTAAGCTTAGAA 654 29 100.0 35 ............................. ATAGGACAACGTATTCCTAACATTTTAGTTTCTTC 590 29 100.0 36 ............................. ATAAGGTGGTATTCTGCTATGTTCTTGTAACTTAGT 525 29 100.0 37 ............................. GAGATTATCCAGGCAATACACATATAACAATTATAAT 459 29 96.6 36 ............................T AAAGACACGGTTAATTATGAAAATTGGGTAAGGTTA 394 29 96.6 37 ............................T ATAGCAAAGACAGATGTATAGATGTAGATAGCAGAAA 328 29 75.9 0 ...............AAC..T.AA...T. | G [315] ========== ====== ====== ====== ============================= ======================================== ================== 80 29 97.9 36 GTTTTATCTTAACTATGAGGAATGTAAAG # Left flank : TTGCAATATTTGTTCTTTGAATTCTTCTGAATAACTTCTTCCCTTCATAACTTTCCTCCAATAATTACTATATTTAGTATAACTTATATTAGTCATTATTGTCCAATTAGATATGGGGGCTTAAGAGGAACCATTTTGGTTTTGTACCTGTTGGGTTCGGGTAC # Right flank : GCGTACCTGTACAAAAAAATAAAGCTGCCAGCGATGGCAGCTTTTATCGGTTAGTTTTTCTACATTCTTGTGGCAGTTTATCTGACCATGGTAGAAGATCATCTAAAAATTCTAGGTTTTTATCTTCCATATGTTTTGGTATTTCAGTAAGAAGATTGGATTGTCAACACTTTTTAATACATTTTTTATTCGGTCATATTTGCAAGTCTATACTCAACTGGAGTCATATAGTTTAAAGAACTATGAATGCGTTTATTGTTATACCATAATACATAACTTCTTAATTCTAACTTAAGTTC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATGAGGAATGTAAAG # Alternate repeat : GTTTTATATTAACTATGAGGAATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 46816-50952 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULX01000017.1 Inconstantimicrobium porci strain WCA-383-APC-5B seq17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 46816 29 100.0 36 ............................. CCTACTACAGGGTAACGACCATTAGTCAAGCTAGCA 46881 29 100.0 36 ............................. TTTAAACAGCATTTCAATTAAGTTATCCAGGTTGCA 46946 29 100.0 36 ............................. TTCTAAAAATAGAAGTACCCCCATACATTCCCATAC 47011 29 100.0 37 ............................. ATGGAAGAATTTTTAAAAGAGTTTGGGTTACCTGGAA 47077 29 100.0 36 ............................. CTTATATAAGAGTATAGACAAAAAGCTAGTAAATTA 47142 29 100.0 36 ............................. TTTAAAAGAATTATATCAAATAATGTAAAAATAATA 47207 29 100.0 36 ............................. CCGTATATGCATGCAAAATTTGCACCATTAACTCTT 47272 29 100.0 35 ............................. TAAATTTCTTCTGCTTCTGCAAATGATAGAACTTC 47336 29 100.0 37 ............................. TAAAAGCAAACACCTACTTTTTTCTTAAACGCTACTC 47402 29 100.0 36 ............................. TTGTTCAGGTGTAATATAAAAATACTTAGTTTCATA 47467 29 100.0 36 ............................. ACAAACATTTACTACGTGGTTTAATGGGGTACATGA 47532 29 100.0 37 ............................. CTATAAGAGTCTTATTTGATATTGCTCGTTTTATCGT 47598 29 100.0 36 ............................. TTAACATAAACTTATGTTATAATAGAGGTACAAAGA 47663 29 100.0 36 ............................. ACGAAAAGCAAAAGATTATAATTAAACCCACTTTTG 47728 29 100.0 36 ............................. CTTTTGTTTGTAACGGTTCAAGATTAGAAGACGTTT 47793 29 100.0 36 ............................. AAAGAATTCGCTTTTACTTTTAGTTCAGTGTCTGTT 47858 29 100.0 37 ............................. TTAAAATATCCGAAGAAACTAAGAAGCAAGTAGGAGC 47924 29 100.0 36 ............................. TTTTACTATCTACTTAAATAGTTCAAGTTCTGTCTC 47989 29 100.0 36 ............................. CATACTTTGATTTACACTATCACAAATTTTAAAATC 48054 29 100.0 35 ............................. TTGATATAGTTTTTTACAGAATCATTTGTTTCAAG 48118 29 100.0 35 ............................. ACAAACATTTACTACGTGGTTTAATGGGGTACATG 48182 29 100.0 36 ............................. CAGGTACAAACCCAAAATGATTAGGGGTTGGGGGTT 48247 29 100.0 36 ............................. GTTAGTCTCAAAGCTATCTTGTATGTCCTTAATAGT 48312 29 100.0 36 ............................. TTCTATAAATTTAATAAAATTCAAGCACATCAAAAG 48377 29 100.0 35 ............................. GTATGTCAGTATTATAAGTTGTTACAACTGGTAAG 48441 29 100.0 36 ............................. AGTGCAGTGACTGATTTAAACATACATTCCTTTTCT 48506 29 100.0 35 ............................. GTCATAAATAGGATAAGCTTTATATGTTCTTCCAT 48570 29 100.0 37 ............................. TAAGTTTACCCCAAGTGTTAGGCTCTATAACTCTATA 48636 29 100.0 36 ............................. TAATTGCAAACTTAATAAATACAGGAGATGTGCCGA 48701 29 100.0 37 ............................. TTAATGCATTTTTCAGATGAAAGTCTTGGAACAATGC 48767 29 100.0 36 ............................. ATTCTATGGACTCTATCTTCTGCTTGTGCTCTAGTT 48832 29 100.0 37 ............................. GTAATGAGAATATATCTTATCAACTCCCCACCCATAT 48898 29 100.0 36 ............................. ATCTAAGAGCGATTATGATAAGCAGTATAATTTGTT 48963 29 100.0 36 ............................. ATAAGGTGGTATTCTGCTATGTTCTTGTAACTTCGT 49028 29 100.0 36 ............................. TTGCTAAACGAACTGGAATACCTGCTTTAAGCTGAC 49093 29 100.0 36 ............................. CTGCTCTAGAACGTACAGAATCATCGTGCGACTGTA 49158 29 100.0 37 ............................. GAGAAGGAAACTCCCGTCATTAGAGATAATTGTATAC 49224 29 100.0 38 ............................. TAATAATGCCTTTATTTTCGGGAATAATCAAAGGGAAA 49291 29 100.0 37 ............................. TATATAGGTGGTAAAAGTGCTACTGGTCACGGAGAAG 49357 29 100.0 37 ............................. AACATACTAACATTGGTATTTGAGTTTGTACTTGCAG 49423 29 100.0 36 ............................. ACATAAAAAAGTTGTGGAGCTAACAAAAAAGAATAG 49488 29 100.0 35 ............................. CCTATATAGAAATATATAGTGTATAATCGGGGAAG 49552 29 100.0 38 ............................. TTTGTATCCCCCTGTATGATTTCTTTTTCCATTACAGC 49619 29 100.0 37 ............................. ATAAGCTGAATCATCAAGTTGTCGAAAGCTTAAACGG 49685 29 100.0 36 ............................. ATTACCTGGTAAAATAGGGATTGCATTAGGCTTTGT 49750 29 100.0 36 ............................. TCTGCATTACCTATTGAAGTAGTTTTTCTGTTTTTC 49815 29 100.0 35 ............................. GGAGTTGTTCGAATATCTCTTCATTTGTCATGCCT 49879 29 100.0 37 ............................. ACCAGATACAAAGTGATAAAGCTATAGAATTTATAGC 49945 29 100.0 36 ............................. TTTTAGTTCGTAACTGTTCCATAACTTCCCTTAGAG 50010 29 100.0 36 ............................. AAACAAGTTTGTTGTTCAAGAAAGTGTTCTAATGAA 50075 29 100.0 37 ............................. AGTAGAGTACACACGTTAATAGTGTGGAAGTGCGCAG 50141 29 100.0 36 ............................. ATTTCTTTCTATTAATTTCTTTTTCCCGCAAAAATC 50206 29 100.0 36 ............................. ATGCTCTTCATATGATTTAATACTGCTTTATTTATT 50271 29 100.0 37 ............................. ATGAAAACTGGATATTTTTTTTAAAACATATAGTGGG 50337 29 100.0 36 ............................. TGAGTCTTGCTATTGTGTATAATCTATTAATTTGAG 50402 29 100.0 36 ............................. ACATCTTTGAAGGTTCTACTTGACTTCTTCCTAATG 50467 29 100.0 36 ............................. GTGGCAACTATAGATAATATAATATTGGATAGCTTA 50532 29 100.0 37 ............................. CTACTATAATTTACGGTAGCATTTAAAACTTTAGAAG 50598 29 100.0 36 ............................. CACACTATTTTGTAGACGATACTTCAATATATCAAG 50663 29 100.0 36 ............................. GAAGTTAGATGATGAAGAGGCTGAGTATAGTTTTGG 50728 29 100.0 36 ............................. TAAATAAGTTAACTGCATTTATGCCAGTTTCTAAAG 50793 29 100.0 36 ............................. TTGGCCTAAGTTTTTAGTTGTATCGTCTGTAAGAGT 50858 29 100.0 37 ............................. TTGATAAGTAAGTCTATAGCTTTCAATTGTTTTTCAG 50924 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 64 29 100.0 36 GTTTTATATTAACTATGAGGAATGTAAAG # Left flank : TATTTGACATGGACACAGAATTCAGTTTTTGAAGGCGAAATAACTGTAGGAAAACTCCATAAATGTCTTGCTGATGTTAATAAGGACATACTGCCTGCTGAAGATTCTCTTTATGTTTATGTTGTTAAAAATTCTCACAATATAACTAAGGAAGTAATTGGACAGGAAAAGAATTATGATGAATTATTTCTATAATAATTGATTTACTGCAAAATTGATGGAATAAAATTAAAATACACAAAGATTTGTGATTTATATACAGTTTATTTATAATAAAAGTATAAAAAATATATGTGATAATAATATGTTTTAGCACTTTTGCAGTAAAACCATAAAATTACAAATGATGTTCTAATTAAGAATTCATGCAGGTTTACAGTCAATTAAAAGAGACAGTTCGAAACACTACTAGAGGTGTACTGCAGATTGTTATTAATAATCGTGTTTTTAGACGCGTTAAAGGCGCTATTTTACTAGGTTTTATTTTGAGATTTTATTGG # Right flank : AACCGGATTAACCCCTTTATATTGGACAAAATCTATTAAATTCTTCTTTTTTCTCAATATTATATCTTTATGCAAATTTTATCTAGATGCTCTCCAAGATAAAGAGTATAAAATTCCTTTGGTGGCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //