Array 1 66628-66295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000109.1 Iningainema tapete BLCC-T55 NODE_69_length_67047_cov_25.543631, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 66627 37 100.0 37 ..................................... AAAATTTTGCTCTTTATCATGGCGACAGTATTGAGTT 66553 37 100.0 38 ..................................... GTCAATGCAAACGATTTATCGATGGGGACGAGAAATTG 66478 37 100.0 36 ..................................... GTTAGTGTTCGCTCTCAGAAACCGTGCAACTTTTTC 66405 37 100.0 36 ..................................... TGATTTGTCGCAGTTGAGCGATCGCGTGTTAAAAAA 66332 37 94.6 0 A..C................................. | G [66328] ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 37 GTTTCCAACAAAGCGACTTCACCCTGTCGCTGGGAAG # Left flank : ATGCTACCCATTTTTTTGCTTGGGTAGCGTCCACTAACATTGCCAGCCCTACTTCTTACCAGTCTTGCGGGTGGAGATTCGCGAACTAAAGTAATATATTTTACTGTTTTCTCACTTAGGCTTAAGTGGTTACACCATTGAAAATATTCATCATCGTTAAGCATTTTAATTTACGCTCATCCGTAATGAGGTTCTTTTCTGGCGCTTTTATTCAAGCATTTCTGATTTACTTTGTGCAATTAAATCATTCTTAAATTTTACTTTGTGCAAATTTATGCTTTCACTCTGCTTTAAAAAAGAATTATTACACCACGTAAAAATAAGCTCTTCGAGCTTATGAGTGCAAGTTAATGCTTCCACCCTATGCAAATTAATGGGTGAAGTAATAGTTGTTGACTTTAATCAAAAAATTACTCAAG # Right flank : AGCGGTATTTTGAAACCCTTACGAAGTATAGCATCCAGAGGCGATTTGCGCGGATAGCGGATTTTGTGGCTACAACTTGGTAGAAACAGACAGACAAAATCGCTGAAACACTCTATGGGTAAGAGTCGCGGAGCGCAACGACAGAATAAGGGTTTCCGAGATTTGGCGTAATCCGCGCAAAGTGATAATAGCATAAACCAAAACTCGACCATGCCGATTTTAGATTTTCGATTTCAGAGCCATAAATTAGAGTAGGAACAAGCCCCCGGATTCATCTGTGGGGAAAATCCAAAATCCAAAATTGTATGACTTAGAAAGCCCCTCTTCCAACCCCCTGTTAAAGTAGCAAATAACAGATCTCCTTTGTCAAGCTGTATAAATTAATCACCTCCCAATCCAAAATCAAAAATCCAAAATCCCTATATGCCCAAGATACCCGACGCTGCCAAAAAAGTACCCTTGATGTTCCAAGCACAAACTGCTGGGCGTTGTCAACTGCA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACAAAGCGACTTCACCCTGTCGCTGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 110-5781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000014.1 Iningainema tapete BLCC-T55 NODE_122_length_36510_cov_40.419867, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================== ================== 110 34 100.0 41 .................................. AATATTGGTGTCGAACTGACCCCCGAGCAGCTCGAGGAGAG 185 34 100.0 36 .................................. ACTAGTTGCCGTCTCTCTTATCCTTCACGAAGGGGG 255 34 100.0 36 .................................. ATGGATTCCTGTTACTTCTGAGAGTTTCATTACTTG 325 34 100.0 39 .................................. TCTTTCAACGGACAAAACATTGAAGTCATCTCTCTAAAG 398 34 100.0 34 .................................. TTTAGCTGGGGTCTTTTGTGCGGAAGGAGTCAAG 466 34 100.0 41 .................................. CCTTGGGCATCGGCCTGGGGTGCGAGATGAAGTCCGGAAAG 541 34 100.0 37 .................................. CAATTTTGGAAGACATACCTTCCGATCCGAATATATG 612 34 100.0 40 .................................. TTTGCCAGGGCTCGATTGCCATACTGGTGCCGTGCCGAAG 686 34 100.0 36 .................................. TCCTACGCAAGTTGTAAACGATTCGCTGCTCCCGAG 756 34 100.0 42 .................................. TTGTCTGTCACCTCAGGAGATGGCTCTAAAACTCTTGGAAAG 832 34 100.0 42 .................................. CATTTTTACCCTGCTTCTTGGAAAGAAGACGCGGAAGCAAAG 908 34 100.0 40 .................................. AACTCTTGCGCCAGAAATAATAGGAAACGACACGACATAG 982 34 100.0 39 .................................. TGGTATATAGGAGGGAGATTTTCTCCTCCTCGGTAAATG 1055 34 100.0 40 .................................. CTGTTATTAGAGGAAATTCCGGCTTCCGAAGCGGGAAAAG 1129 34 100.0 34 .................................. CGGAGGGGGAGGAACTTGCGGGTGCAACTGCTCG 1197 34 100.0 38 .................................. TGCTTCTAATGCTGGAGTTATTGGTATTGCCGTTTTCG 1269 34 100.0 42 .................................. TATTTTGACGATAGGCCTGTGTCTAATCCAGGTTTAGATTGG 1345 34 100.0 40 .................................. ACCAGAGGGACAAAAGGCTGAAGCGGTAGAGGCTAAATCG 1419 34 100.0 35 .................................. TTCTAGAAAAGGGAGAAAGTTTTACTAGCTTTGTG 1488 34 100.0 44 .................................. TCTTTTTTAGCGGACTGACCACAAGGTCAGCTAAGATTAACATG 1566 34 100.0 38 .................................. ATTGATCAACTGTGAAGCTTTCAAGTTTGGAAGACTAG 1638 34 100.0 38 .................................. ACGATGTGACCTTAGTCACCGTTGAAGGCCAAGATGGG 1710 34 100.0 39 .................................. CGATAACCCTGAGTCTGGACGGCTCAGGATCTCTAACAG 1783 34 100.0 41 .................................. GTCTTCCCGATCAGCCGCAATTGCGGCTTGGGATCAACAAG 1858 34 100.0 40 .................................. TCATCTCTGTTGGTATCCTCGCTTTTGGTGCTCCCGCTTG 1932 34 100.0 39 .................................. CCGTACCACCGGTGGTGAAACCAGGTCCCAGTACTCCGG 2005 34 100.0 40 .................................. TTTATAAAAAAAGATGAAGAGTAGAATCTTCATTCCTTTG 2079 34 100.0 42 .................................. TCTACAGAAATTGCGAAGGGCTCACCCGCTCCGAGCAAGGAG 2155 34 100.0 35 .................................. TTATTACTTTGATCTGAAGGGGAATCCTATCGAGG 2224 34 100.0 37 .................................. CACCATTGCTGCTACCTTCGCGGCAAACTCCAAGAAG 2295 34 100.0 41 .................................. TTTTTCTCTTTCAATTGGAATTCATCCGGTATCCTGGCTAG 2370 34 100.0 38 .................................. ATTGCAAAATTGGCAGAAGAATTAGGTCTTGTTAAAAG 2442 34 100.0 40 .................................. TTTTTTTCATTTTGGTTTCTATGGCGGGAGCCGCTGATGG 2516 34 100.0 39 .................................. ATTTTTGAAAGGAAGCTCCGAGTCTTACCAATGGGAGGG 2589 34 100.0 38 .................................. CCTGGAATCGTTACTCCCATCGAGCCTAACTCTAGACG 2661 34 100.0 46 .................................. TATAACTCTAAAAAAGGCAGAAGGAAGAGTTAGAAACTAATTAACG 2741 34 100.0 38 .................................. ACGCCTTGGCCTCTCCGTAGAGAATCTGATCACCCCCG 2813 34 100.0 40 .................................. ATATTACTCCTGTAGCTCTTGGTAGGCTTGTACGTAAGGG 2887 34 100.0 38 .................................. TTTCGGAAAAATTCCTCCTACGACGGTTATAAAAACTG 2959 34 100.0 43 .................................. TTATTCTGATCGCTGTCAACATTGTCTGGGGGATCACCGACGG 3036 34 100.0 40 .................................. TTAAAAACTCTACCAACCCTGACCCACCTATCTGTCTCCG 3110 34 100.0 42 .................................. TATTGTCGCTATTAATTTTGTCCCTCCCTTTTCGGAGTGGGG 3186 34 100.0 38 .................................. TCTCCTGATGGATCTACCTCCGCCACAGCTGGCGGAAG 3258 34 100.0 39 .................................. AGCAACTGGAAACTTTAGCCAAGACAACTCCGCGAAAAG 3331 34 100.0 37 .................................. GCTCATCAGTCATGGCATCGACCCTGATGCTCGAGAG 3402 34 100.0 35 .................................. GACAAAAGGCTGAAGCGTTAGTGGAGGCCAAAAAG 3471 34 100.0 41 .................................. AACTTCGACTACATGTATTGGCTATTTTATTCTTTTTGTCG 3546 34 100.0 36 .................................. CCTAAAAAAGGAGAAGGAAGAACACGAGTACAAAGG 3616 34 100.0 40 .................................. GTTTAGGTGTATGGTTTCTCCTGTACGGAGAAATATATCG 3690 34 100.0 35 .................................. TGACGTTCACAAAGCCCGTCGCGAGTGGGCACATG 3759 34 100.0 40 .................................. TTTTGGCAAAATGATAGTACTTTGCAAGGGGTACAAGATG 3833 34 100.0 39 .................................. GTTAAACATTCATGTAAGAATAGATGAAGCACAAGTGGA 3906 34 100.0 40 .................................. TTTTTAGAAAAATTAATCTGGCAGTACTCTATTCCAGAAA 3980 34 100.0 39 .................................. TCTTCTGGAGAGATAACGTGTAAAGCGCTCTCTCAAAAA 4053 34 100.0 39 .................................. CCCCCTATCTGCGATCTCCCATGATCACCGGGTCTCTTA 4126 34 100.0 37 .................................. TAGAGAGATAGCGAGGAAGGTTCTCAACACCACAAGA 4197 34 100.0 36 .................................. AATGGATCCCGGATTTTTTGATCCAGGGTTCTAATA 4267 34 100.0 38 .................................. AGAAAAATGTCGGAAACCGCACGACTCGCTTCGAAAAA 4339 34 100.0 40 .................................. TTTTTTCTTACACCCAAACAGCTTTACGAAAAAGCTCAGA 4413 34 100.0 39 .................................. GATCACGTTCACGTTTATCCTGATGGCAGCTACTCTTTA 4486 34 100.0 39 .................................. TCAAACTGAAAATAATTCGTAATTCGTAATTCGTAATTA 4559 34 85.3 39 AAGAA............................. TCAAACCCCCGTACACTAATTTTCTCCAGTGAGAAAGCA 4632 34 100.0 38 .................................. AAGTAGTCGACATAATCGACTATCGTTTAACTCATTTA 4704 34 100.0 40 .................................. TTTTCACGGGTCGGCAACGACCAACATCAGCGTAGAGAGA 4778 34 100.0 39 .................................. TATATATCAAGCTACCTCTAGAGGTCAATCTTTTGGAGA 4851 34 100.0 39 .................................. GCAAAGGTGCTGTGATTTTTACAGCCCATGATCCAATGA 4924 34 100.0 36 .................................. ACGGAAAAGGATTATTTTCTATAGATTACATAAATA 4994 34 100.0 47 .................................. CAGTCAACACCGAGTAAAGAAAAGAATGACTAGCTCTTTAACTGAAA 5075 34 100.0 40 .................................. ATATGTCCCAATTTCCAGAGCAATGCAAAATTCTTAAATA 5149 34 100.0 42 .................................. TGGTTAAGCCTAGTTGCCGGTGGAGCCAGAGTTGGCTCCGTA 5225 34 100.0 43 .................................. ATTAACCAGTTTCTTGGGAAGAATACCCTCGGTACTATTGCTA 5302 34 100.0 42 .................................. CACCAGTCCTCCAGCCGTTATCAGGGATCCTGATGATGACAA 5378 34 100.0 42 .................................. ACTTTTCGCTTCTGGGTAAGAATACCTGGAGAGTAGTCAAAA 5454 34 100.0 36 .................................. AGTTTCAAACCGGAGAGGTCTTAGTTACAGATCGGA 5524 34 100.0 39 .................................. ACTCGCATAAATGCGGCAAAGGAGATCGCAAATGGTTTA 5597 34 100.0 40 .................................. TTCTTGATATTGCAAAAGTTTTGCGTACCGGGCATCATAA 5671 34 100.0 43 .................................. GTCGCATGCCTCACTTTCACACCTATCCTGACGGAGGTTGGGA 5748 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =============================================== ================== 78 34 99.8 39 TTTCCATTAATTCAACTTCCGAAGAAGTTTAAAG # Left flank : ACGTAAAAATAAGCTCTTCGAGCTTATGAGTGCAAGTTAATGCTTCCACCCTATGCAAATTAATGGGTGAAGTAATAATCTCCGGAATCACCGGAGCGTCGATGATGTGT # Right flank : GTGCAGCTTCTAAAAGCCTTACCCTGAGATAAGTCTACAGCAGTTTTTTGTGGGATGCAAATTTTGATCTAGTTTATTGAAAATAATTATCAATAAACTAGTAGTTCTGAGTCTTCAAACCCATAGTTCGAGAGTAATTTGGGGGATATAACGAAGGAATCAGGGTTTCAGCGATTTTACTTATCCCCCAAATATCTACTATATAGTTACCACCAAATAGAAAAGGGGAGAGTGGAGGAACATTACCCCCATTCTCCCTCTCTAGCTCAAAGTGGTAACTTTACAACAGAACTAACGGATCAAAGCTTCCAAGTCATCGGGCGATATACCTCAATCTCACCCATTAAACTGGAAATGTACTCCCGTACCTGCAACTCCAAACAACGACGGTATGCCACCTTATAACCTGTATGTGGATGCGTTACCTCTGTTTGCAACCTCTCCTCCCAATGCTTGAGAAACTTCTTCAGCGCATAAGGTTGGAAATACACACCGCCGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATTAATTCAACTTCCGAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 80077-80257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000046.1 Iningainema tapete BLCC-T55 NODE_22_length_149096_cov_25.932223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 80077 37 100.0 35 ..................................... TGCTAATTGCGACAGTTGGACAAAGACCAGATCTC 80149 37 100.0 35 ..................................... TAGTGAAGTAGCGCTAGATGAATTAGATAATAACT 80221 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 36 GTTCCATTCAACATAAATCCCTATTAGGGATTGAAAC # Left flank : TTTCGGACATATCGCGATATATCGTTATTTTTAATATAACGCGATATATCGGAATTGACAACCGACTCCGGAAAATGAGGAAAACAAAGGATATGATTTGAGTGTGCGATCGCTCTTGAGCAAACTCAACCAAAGTACTGGAGCCATCTTTCCTCTGGTGTTAGACTGGTAGTTGAGAGCAAAAAGACCGATGGAAAAAGCAATTGACGAGTTTTACCCAAAGTTGGAAACACCAATCAAATACATTAGCTGCGCGGAGGGGTAGGTGTACAAATTCACATAGCGCAGAAAAGAGCCTCAATGGTATACACAGCAAGATTTTCATCCATTCCAGAGGGAATTCTCATCCGCGCAAATCCAGAAACGCTTGCTATATAAGGATTTCCATCGTTGAGAATTTCTTGACAGCTACCATTCGAGTGGCTATACTAGCGATTAAAGCGCCAGCCGCGCAACCGAACCTTGAAAAGTTAATACAGCAAGCTTTCCAAGCCCCAGCG # Right flank : CGAGGCAGAAATATTACTCCATGCTTGCGCTGACGAACGGTAAAGCCACCAGCCACTTATTCATGAGAGTTTTATAATGGTAGCAGCTATCATAGATTGCAATAACTATTATGGCTTGGATATGAATTTAGAGCTAGATGCATTTCGTAAAACAGTTGAGCATATTGCTTTGGTGCAACGATTATTACTATCAGCCCAGATAGAGCTTGCTCGACGCATTACAACTCATGATCAAAGCAAGTTGCATTCTCCCGAATGGGAGATGTATCGAGAAATGACTCATAAACTTGAAAGTGTAACTTATGGCTCTGATGAGTATGAAGCTCTGCGTAGAGAAATGCTAGACAGTGCATTGGGGCATCATTTTGCTCACAATCGTCATCATCCCGAGCATTTTGAAAACGGCATCAACGGGATGAACTTATTTGATATTTTAGAAATGCTAATTGACTGGATGGCAGCCACTAAACATCGTGCCGATAGCGACATTGCCAAAAGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCATTCAACATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 152418-153987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000040.1 Iningainema tapete BLCC-T55 NODE_19_length_156663_cov_40.480349, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 152418 35 100.0 40 ................................... TGTCCCTGATAAACCGACCCCCAAAAGGGTTCGGTTGAAC 152493 35 100.0 37 ................................... CTTCATTGGTCTTTACGGTTATTTTTGGGCCAACAAA 152565 35 100.0 36 ................................... AGTATAGACCCATTAGTTACGCAAGCTGTAAACAAA 152636 35 100.0 38 ................................... TGTTATGATCCACCTGGTCTTCGTTCTTGTATGTTTGG 152709 35 100.0 36 ................................... TACGCAAATTGTGCAGGGCTCGCCGCTCCCAAGCAA 152780 35 100.0 38 ................................... CTGAGCCAGACTCTGGTACCGATCTCGCGAAAGCAATT 152853 35 100.0 36 ................................... TTGATAATAACTTGATCAACGGACAAACCTCCAAGA 152924 35 100.0 43 ................................... CTGTCACGGGCAACGTCGTCGGACAAACCTACAACGACGGTTC 153002 35 100.0 36 ................................... ATTTTTACCGGGCACGATCCCGTGCCTGATGGAGAC 153073 35 100.0 41 ................................... GTTCGGTGCTGCTCTATCTGGTTATCATAATGTGCCTGTTC 153149 35 100.0 37 ................................... CCGGCTTCGGAAGCCGTAAAACCTCCCGCGACCAAAA 153221 35 100.0 38 ................................... AGAGACAAATAAGAAGAGATACACATTTGTGTGACCGA 153294 35 100.0 44 ................................... AGCGTTAGCCAAGTAAGAGCATGCTTGGGGTTTGACACAAGCAA 153373 35 100.0 38 ................................... TCTTTGACAATTGTTTCTCGCTCTGTTCCTTATAGAAC 153446 35 100.0 40 ................................... TGTTTCTGATCCTTGCCATCTCGCGCAGGATCCATGTCAC 153521 35 100.0 35 ................................... TTTCCATGACTATTCTTTCCGATCCCGGTTTTATT 153591 35 100.0 38 ................................... TTGACGCTTTCCATTCGGTTATTGACGTTAACAAGCTA 153664 35 100.0 38 ................................... AATTATGATGAGTTGATCGAGGATGTAAAAGACTACTT 153737 35 100.0 37 ................................... TTTAATAGTCACTTTAATGAAAGGGCCAGACGGTCAA 153809 35 100.0 40 ................................... GATAAACTTGCCTACATCTATTGTGTAGGCTTCTATAAAA 153884 35 100.0 33 ................................... AGGCACGTCGGGATCTCCTGACAAGGAGGCTGA G [153918] 153953 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 22 35 100.0 38 GTTTCCATTAATTCAACTTCCGAAGAAGTTTAAAG # Left flank : CTAACTATTGAGTTTACATTAGGCAACTGTCGGGTTTACAATAGCTAACTATTGAGTTTACATTAGGCAATTATCGGGTTTACACTAGGCAATTGTCGGGTTAACAATAGCCTGCTGTTAGAGTTGACATGTAACTTAAGTAAAAAGTGGCAGTTTTAAAACCATAAAGTGGCAGCAGTTGTAACTTAAAGTAAAAAGTGGCAGTTTTAAAACCATAAAGTGGCAGTAGTCAAAAACCTAAGATGGAAGTGTATTTGAGAGATTTTAATGCGTTCCCCGAAGGGGTTGTCGTTCGCGCAGCGTCTCCGAAGGAGAAGACATCGCTTGTAAATCAAGTACAACGGGAAAATAAGCGTTCTAGCTCTCCAGGCTCTGCCATTTTATTCTTTAATTTCTGCCATCTTATCTTTTAAGTAACATAGTTGTGCAAATTTATCCTTCTCGCCTGTGCAAATTTATGGGTAAAGTAACATAACTTTTCATCGAAGAGTACCGAAAAA # Right flank : GTACTACAACAAGTACTGTTACTTGAATCATAAATTTGCATTTTTGCAATTTTATGCTTCCACTAAGGTTGTGCAATTTTATGATTCCATATAGGCTAGAAAGTATAAGTGTTGAGAACCATATTAAATATTATACACGTTCTCGTTGAGATTGATAACGGTATAGTTTGTAACGTGTAGTTATTTGACGGCACAAATCGGGAAAGTGTCGGTATAGTTCGGTTTTATGATAAGAAATAGCGGCAGCAACTTCCATAACAGACTTCGGTGGTTCTTCAATTAGTGCGTTTTCTAACAACTGTTGTACTGTATTTAAAGTAAATGGGCGGTTAGTTTTTCTCTGTTGCTGACAAAGTGGTAGCTCTTTCAAAGCTTGCGGCTCCAGTACTTTAACATTACCAGTTAAAATATCAATTAAAGGAATTGATAGTCGATAGCATACACGTAAAAGTAGATTCAGAGATGGAAGCGTGCGACCCTGACGCCAATCTAAAGGTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCAACTTCCGAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 322350-322674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000072.1 Iningainema tapete BLCC-T55 NODE_3_length_560217_cov_25.305152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================== ================== 322350 25 100.0 35 ......................... CCAAGATTACTACGCCAACGCCATCCCCGCAAGCC 322410 25 100.0 38 ......................... TGTCTACGGGCAGTATGGTAATGTGATCCCAGCAAGCC 322473 25 96.0 32 .......C................. CGTTGAGTCCTACAACCCTCTACCAGCAAGCC 322530 25 100.0 35 ......................... CCAAGATTACTACGCCAACGCCATCCCCGCAAGTC 322590 25 88.0 35 .......C..T...........C.. TCAAGAATATTATGGCAATGCTATCCCCGCAAGCC 322650 25 92.0 0 .......C..............C.. | ========== ====== ====== ====== ========================= ====================================== ================== 6 25 96.0 35 AAGATCCATACGGCGATCCTGCTGA # Left flank : CTCCTACGCCAACCGAAACTAAGAGGGGATTAAATACGGGGCAGAAAGTTGCAATTACATTGGCGGGAGCAGCTGCTCTGTATTATCTCTACAATCGGTATAAGAATTCTCAAGGCGCAGGAGCCAAGGGCAAGTACTATCTTTCTAAGAACGGGCGTGTTTACTACCGCGACGAGCAAAATCGCCCAGTCTGGGTAACACCACCACCAGAAGGAATCAGAGTTCCGGAATCTGAAGCGCAACAGTACCGGGATTTTCAAGGATACAACGGGCGTGAAACAGGTCGCACGCTAAGAGACGTAGCTCCAGCAAACGCTCCAATATAAACCAGCAATCAAATTCATAACCGGGTTTGTGGTTTGGAAGGTAATGGAGCAATAACTTAACAAGGAGAAAAATCATGGTAGATGACTTTCTGCGTAGAGCAAAGGATTTTATCGTTGGCGAAAATAACGATCAAGATGCTGAGTATGGCGATCGCCCTGTCCGTCCAGCTAGTG # Right flank : ATCAAGAATATTACGGCGACGAACGTCGGTCAAGGTAATGAAAGTGTTCTGCCCCCCCCTTCATAAGGGGGGGTTGGGGGGGATATCTACCCACAAAGCGCAAAAATTTGCTGCGCCTGGTTAATACTTTGACGCACAGCAGCAGCGGAAGCATGTAACGCTGCTATTTCCTCATCGGTAAGGCTTAATTCCAAGACACTTTCAATACCACTACTACCCAAGCGACAGGGAACTCCGGTAACAACATCCTTCAAATCGTATTCGCCTTGAAGGTATGTTGCTATGGGCAACAAACGAGACTGATTGAGCAAAATCGATTCCACCATCACACAAATGGAAGAGGCAGGGGCGTAAAAAGCACTGCCATTTTGCATCAGTTCGACAATCTCTGCACCACCATTGCGGGTACGTTCAACTAAGCGCTCAATTGTTGCTGCATCTAGCAATTCTGTAATAGGAATGCCGTTCACAGTAGAATATCGCGGTAAAGGCACCATTAA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGATCCATACGGCGATCCTGCTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 45281-46561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000080.1 Iningainema tapete BLCC-T55 NODE_45_length_98176_cov_25.010520, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 45281 36 100.0 35 .................................... GTTAATTACGGATCGGTCGAGATCTCTAATTGCCG 45352 36 100.0 37 .................................... TCCTCTCGAATGTACGGAAATGCGCCTCTTGTCGATG 45425 36 100.0 36 .................................... TCGCCGCGTCCAATCTGGTAAGCGTTCCTCTATGGG 45497 36 100.0 39 .................................... GTCTGCAGAGCTACTACTGGTGTCGAATGAGCTGAGAGC 45572 36 100.0 37 .................................... TCAACCACCCAACAGGCGGCTCCAGAAATTACTGCCT 45645 36 100.0 39 .................................... CTTCCTACAGTTCCAGTTGCTCCAGTAACAAGAATTCTC 45720 36 97.2 38 ....................A............... TTGACCAAGTGTCAATTGAGTTAAATCGTTGGAGCCTA 45794 36 100.0 39 .................................... TTCGCAAGTTGCAGGTTGGAGGTTTTCCTGCATTGCGAC 45869 36 100.0 35 .................................... GAGTAGTACACTTTTTCTCCTTGACCCTCACGGAA 45940 36 100.0 37 .................................... ACTCTAATGTTTTACCGCGAGGAGCTTGGCATAACTG 46013 36 100.0 40 .................................... CAGCCCGTACTACCGCAGGTGCGTAAAGCGTATGGGTCAA 46089 36 100.0 37 .................................... CACGAGTGAATCGCCAAATGACTTTCCTCTAGTACAA 46162 36 100.0 41 .................................... AATTCTTCCCAGTCAAACTGGGCGCCAGGGTAATCTTGGTA 46239 36 100.0 40 .................................... ACCAGGTCTCGATAAGTCAAAACCTGGCTTTATTAATTAG 46315 36 100.0 34 .................................... GAGAAAAGTGTAGAAAATTTCATGAGAATCTCCA 46385 36 100.0 35 .................................... GAAGACATATTACATCCTCAGCTTTGTTGTGTGAT 46456 36 100.0 34 .................................... TCAAGGTTTTTCTCCCTTTCTTTAGAATTTGTTA 46526 36 94.4 0 ..............................A....A | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 99.5 37 CTTTCCAAACCACTTCCCCTGAGCGGGGACGGAAAC # Left flank : ATCGATAACTAAAAATTATCTAAGACTCTTGCTTGAATAACCGATCAACTCTTCTATTGGGTTTTTCTTACTTTTTCAGCAAGCCCTAACTAAATGTGTACTGAGCATAACAAGCGATAGTATGGGTTATGGGCAAAGGCTATCAACCCGTTCTATCTGAGCGAAACTGTCTACAAAAATAGCCTGCAGCGATCACTATTCACTTAGCTGTAAAAGTTGGCGATCAAATCTCCAATATTGTAAAGAATCTTACACATTCATTGACAATAGGGCAAATTACGTATTACTCTGTATTTAGTCGAAAAAATCATCGACACACCTCTACAAAACCTTGAAAACCGCATTATTTCGTTGACCTGTGTCGATTGCTCTTGTAGCAAGGCTTTTAAGCTAAAAGGAAAGAGTTGATTGTCAATAATTTTGCGCTTATTGATAATTGAAAAAAGGTGTGTCGATTTGACGCCTGAAACCCGCTCCCAGTAAGGCTCCCTGAGCGAACT # Right flank : AGATTGCAGATGTAGTTTACTCAACTTTCACATTCCCAGGTTTTGACGATCGCACTCCCTAGAGTTGTTTCAACAAAGTACCCGAACACAAGATTCGATTTCAGCGCTATCTCATGTATCATAAGTAACACTGCGTAAGTACAACTACATTCCCCATGCCAAAACCTGCCGATGTCAGCACCAAACGTTTAATTAGCCTCGCACCCGACAATTGGGTAAAATGGGTAACACAAATCCCTGATGTTGTTGCAGGCTAAATCCTCAACTCAGAGTTCCAGTGGATTAGTAGAGAAAGCGATGTACTCATCCGGGTTAAGAGTCAAGAACACGGCAAATTTCTTGTACTCAATGAATTACAATTGCGCTATAAATCCCAAATGCCCAGAAGGATGCGTGCCTATGCCGCACTGGCAGAAGAAAAATATCAATTACCAACTTATCCTGTACTGATTAATATCCTCAAAACGAGTGATACACAAATTCCCACGCGATACGAGTCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACCACTTCCCCTGAGCGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 99893-100072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000057.1 Iningainema tapete BLCC-T55 NODE_28_length_137957_cov_25.027567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 99893 37 100.0 35 ..................................... AGTAGTGAAACGCACAACAGTGCGCCGCGCGTTTA 99965 37 100.0 34 ..................................... ATGTACCACCAAAGCCCTCTGTAACTAGTTTGTA 100036 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTTTCAATCCCTAATAGGGATTCGCTGAAATTGAAAC # Left flank : TGTTTAAATTTATTAGACGGGTTAATCCGAAATGTTGGTAAGCCATTCACGGAAATCTTCTGGTGTCATTGCAGAACTATTGTCGAATTCAGAGAAAGCTTCTTGTAAAGCTTCAGTCACTTTTTGCTCATATTCTGGATGCTCTTTCTCTATGGCTGTAAGTACAGCATTTCTCAAACGCTGTAAAGCATTTAAGTAGTCAATAAGAGCATCAATTTCTCCCTTTATCAGTATCCAGGCTAGCGATAGTCTGGCACTTAGAGATGAAAGTAAACCAATGATACCACGACGTTCGGCAATTAATGTGTAAATTATAGCTTCAAGTAAACTACGTTCTTGAGGAGAAAAATCTTCCCACTGCTTTTCTACCGCTATGGCTAATGCTTCAGATCTTCGTGCAAGAACTCTCAATTGTGAAGAACTTATTGTACGCGGTAGAGATATTTGCTTAATTTCATCAGGGTTAAGGGTGATGGTAGCTGACATATACTATCCTGCGT # Right flank : CGAAACGCCAGTACTTGAAACACTTACTGTATTTAATTTTTTAGGTTCAGTTGCGCGAATTGATAAAACTATGCCACTTTTGGCGCGGCTTTATGAGTTTATGATATATCATACAAGCTAAAAGCTAGCTATGGCAAACTTTTGGGAAATTGCGTGGATGGAAAATCGGGTAATAAATGCTGGAATCCTTTTATCATGGGCTGTTCCTTCATTTTATTAACTGCTCTCCTGCCTGTGATCGCCATATTTGCAATAACTATTAGGAAATTTCAACTTTTGAAGCTAGTTTGGGAACCTTAACTACAGGTTGGTTTCAATCTCTAATAGGGATTTTAGGAAATTTCAACTTGACTGTAGCAATTGTGACGTCAATCCCAGTTTTGTTTCAATCCCTAATAGGGATTTTAGGAAATTTCAACCTTGAAAACAGATCTCGCTTGGGTTGAAGAGTTAGCGTTTCAATCCCTAATAGGGATTTTAGGAAATTTCAACAATATGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTCGCTGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 108692-100382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000057.1 Iningainema tapete BLCC-T55 NODE_28_length_137957_cov_25.027567, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 108691 37 100.0 38 ..................................... AATATTTTGAGTTTTGAAAGTTGGTTCATTGTCTTTTG 108616 37 100.0 34 ..................................... AATGTATTGCGCGAGATTAGCTCGTGCAAGTTTG 108545 37 100.0 36 ..................................... CGGCTACTAATCCAATCCAAGCGAGAGTGTCTGGAG 108472 37 100.0 35 ..................................... TATAGGGGTGTAAAATTTTATTGACATATACGGTT 108400 37 100.0 34 ..................................... TTTGCAAAGATGGAGGAACAGAGTTTGTATTATA 108329 37 100.0 36 ..................................... TTTAGAAGGACGATGCTAGGGCATGGAAGGCACTAG 108256 37 100.0 34 ..................................... TGCCTAGTAAGAAATGGATACACAGTACAAAAAC 108185 37 100.0 35 ..................................... AGCAATTTATGCACCAACCTATCCCAATCACAAGA 108113 37 100.0 35 ..................................... GGGTTACGAAATTTACATCCACCGCACTGGTGCTC 108041 37 100.0 34 ..................................... TCAGGGGCGGAATCAAACTGTACTTCAGTATCTA 107970 37 100.0 40 ..................................... TGTAGATTAGAAGTATTAAACCAAGCTATTGCAAGGTGGG 107893 37 100.0 33 ..................................... GGTAAACGCGGTTCTTGGGCTGTTGAAGACAAG 107823 37 100.0 35 ..................................... CAATTACATGCTGGCTCAACCCATATCAGATCCAA 107751 37 100.0 38 ..................................... GCGGTGACTGAGTGGCGCGACAGATATGCTCCCACTAC 107676 37 100.0 37 ..................................... AAAGTAACTGATGGTTGAGTAACCTGTACGTAACTCC 107602 37 100.0 35 ..................................... GAAAGTACTGGCCCGCATTTCTCACAAGTGAAAAA 107530 37 100.0 37 ..................................... TTATCATAATTCGTTGGTAATCCCAACGCTTTTAAGT 107456 37 100.0 35 ..................................... TTTCCTTGTAAATCTTCGCAAGTATACCTGGTGAT 107384 37 100.0 35 ..................................... ATAATTAATTTCAATATTTAAGTCTAAATTGAAAG 107312 37 100.0 36 ..................................... AAAAACATTCCTCTAGATGACGAACATTTTGGTATT 107239 37 100.0 35 ..................................... TTACGGTACACTTGCGACTAGTCGCAAGTAAGTCA 107167 37 100.0 35 ..................................... AATGCAGGTACTCAAGACTACGTAGATGGATTAGT 107095 37 100.0 33 ..................................... AAAGATTTATGCAATCTTTAAAAGACCAGTTGA 107025 37 100.0 35 ..................................... ATCCCAAAAGCAAACTTTTCTTCCAAAGGATATCT 106953 37 100.0 36 ..................................... CTTTGTTTACTTAATCAGCATATATTTCTACTGTGC 106880 37 100.0 38 ..................................... TAATGAGCGACGAGCATAGGCGCGGCAGGGTCAATCTG 106805 37 100.0 37 ..................................... GGATGCAAGCAAATAAGCCTCAAATTGCAGTACATAA 106731 37 100.0 38 ..................................... GAATTTACGACGGTTTCCGATTCCTGTCAACTCGTCCG 106656 37 100.0 34 ..................................... CTCATCAATTAAGTCAAGCCGTCAAGGAACAACA 106585 37 100.0 33 ..................................... TCATTGTTTCTCTTTGTTGAGTTTAAACAATTA 106515 37 100.0 34 ..................................... ATAGTAACCAAGGCGGTGTAGCGGCAGGCAAAAA 106444 37 100.0 37 ..................................... TTAACTTTGCAATAATACAAAAAATACAACGGATGAC 106370 37 100.0 38 ..................................... AAGTAATAGCACTGATACCCCAAGATCTGTGCATTCAT 106295 37 100.0 36 ..................................... TTGATGACGGCGATCGCTGCCTGAGTTTTCGGTCAT 106222 37 100.0 34 ..................................... TAAACAAGCTTAAAATAGCACCTGCTTAATTTAG 106151 37 100.0 34 ..................................... AAAAACACCCTTTGGATTGGCTATATTTTTAATG 106080 37 100.0 35 ..................................... CCTTTATTAACTAACAACAAACTAACGATTTTAAA 106008 37 100.0 34 ..................................... CCTTTATTAACTAACAACAAACTAACGATTTTAA 105937 37 100.0 36 ..................................... TTATTCTAATGCAGCGAAAACACGTACAGTCAGGTG 105864 37 100.0 35 ..................................... TCAATTTACTATTTTTACGATGTTGATTAACAATT 105792 37 100.0 35 ..................................... TAACAATTAGAGATACAAACCGATATTTCTTAAGT 105720 37 100.0 38 ..................................... TAGCAAAAGCAATGAACTTGAAGTGGGTATGTGAAAAT 105645 37 100.0 36 ..................................... AAAGAGCTAAATCAGCTAATTGAAATTTTTTCTACT 105572 37 100.0 34 ..................................... CTATTTCATCCCGCATCAGTACACAGATAGCCTC 105501 37 100.0 34 ..................................... TAGCGCTTACGCCTGCTATCTACGCAGGACTAGT 105430 37 100.0 38 ..................................... TTTTATTGGCTACGATTCCTCTGGTACAGAAGTGTATA 105355 37 100.0 40 ..................................... ATCACGATTCTTGGGCTGTCCAGAGACAGGGCGAAGCAAC 105278 37 100.0 35 ..................................... TTGGCACATTAAAAGAAGAAACATCTGATACAACA 105206 37 100.0 35 ..................................... CTTTCCGGTATATTTGTTAAATAATAGATGTGATA 105134 37 100.0 36 ..................................... TCAGTTAATCCAGCTTTTCTAATCGAAACACCTAGA 105061 37 100.0 35 ..................................... ATTGTAAGTAATAGTGGAACAAATAAAGAAGCAAT 104989 37 100.0 36 ..................................... AAAAACATTCCTCTAGATGACGAACATTTTGGTATT 104916 37 100.0 35 ..................................... TTACGGTACACTTGCGACTAGTCGCAAGTAAGTCA 104844 37 100.0 35 ..................................... AATGCAGGTACTCAAGACTACGTAGATGGATTAGT 104772 37 100.0 33 ..................................... AAAGATTTATGCAATCTTTAAAAGACCAGTTGA 104702 37 100.0 35 ..................................... ATCCCAAAAGCAAACTTTTCTTCCAAAGGATATCT 104630 37 100.0 34 ..................................... GGAGTAATAGCTTTGATTACTCCGTGGGGGTAAC 104559 37 100.0 37 ..................................... GCAGTAATTTTAGGCATATATTTCTCCATTTTTTTGA 104485 37 100.0 35 ..................................... AAGCTAACCCAGAAGTATGTTCTAAGACCTAGTGG 104413 37 100.0 36 ..................................... GCATCTTATATCAGTAGCTTACCGCCACAAAATCAA 104340 37 100.0 35 ..................................... AAAAAACGTATCACTAGTGCTGGATTAGAACTCTC 104268 37 100.0 36 ..................................... TTTTGTAAATACTTATTTCCGTTTGTATATACAAAT 104195 37 100.0 38 ..................................... GGAAATTTGATTTTGTCATTAGGATTAGCTTTGTTATG 104120 37 100.0 34 ..................................... AAACTATGGATAGAGATTTGAATGGTGCGCGGGG 104049 37 100.0 35 ..................................... CACGAACAAGAACACCTGCATTCTTTCTACCGATG 103977 37 100.0 34 ..................................... TGGGAAAAATGACCCATCAGGCTGCAATGGTGTA 103906 37 100.0 37 ..................................... TAAAGCATTCATCCATAAAGGTAAAGATATCGAAGAA 103832 37 100.0 38 ..................................... GTGGTGGCATCAAGCAAATGACCGATGATGATTACCGA 103757 37 100.0 37 ..................................... ATGCACAGCTTTGACTTGCGCCTCAGTCGCCTCAAAG 103683 37 100.0 35 ..................................... ACAACCAACGCTGCAAGAGAGCAAAGACAAAAAGA 103611 37 100.0 36 ..................................... AGCTCACTAATAAAACAAATACCAGAAGACGTTTTG 103538 37 100.0 39 ..................................... TTAGCTAAATATCTCCAATCGCCAAGCGAAAATTTTTGA 103462 37 100.0 34 ..................................... GAGATGAGCCAGACAGAGAACTAATTCACGAATT 103391 37 97.3 35 .......................A............. ACTTTTGACGAATACAAGTAACAGTGTTCAATTGC 103319 37 100.0 35 ..................................... AAAGCACTTTCTCCTCTTGCCCTCGCGTGTCTCTC 103247 37 100.0 36 ..................................... AAAAGCTTGATGGGTGTCTTTTTTTACGTGGAAATT 103174 37 100.0 36 ..................................... CAAAAATGTAACGGAAGCGGAAAAAGAAGCAGCTAA 103101 37 100.0 34 ..................................... TACACAGATATCTTCTCTCATCAAGGAGAAGGCA 103030 37 100.0 37 ..................................... GTCCACTCTCTCCTTGGGTGCGGAAAGAAGCATTATC 102956 37 100.0 35 ..................................... GAAGGTAGCCGATGTACTTCATCATCGAAAAAAAG 102884 37 100.0 36 ..................................... ATTTAATTGATTACTAATAGAACATGACAGTACAAC 102811 37 100.0 36 ..................................... AAGGACAGGATGGAGCAACGACGGATGATGCGACGT 102738 37 100.0 35 ..................................... TTACTGCAATCGGACAGATAGAAAAAATTAAAAAG 102666 37 100.0 34 ..................................... CAAATTACATCAAATAGAGGGAGGTTTTAGATGA 102595 37 100.0 35 ..................................... GTAAATGGTGGCTTTAGGATATAATTTAGATGCGA 102523 37 100.0 36 ..................................... TAAAACGAACTTAGGCATAGCTTTTTCGGACTCGCG 102450 37 100.0 35 ..................................... TCACTAATTTCGTTTTCATCGTCAGCGCATAGATC 102378 37 100.0 36 ..................................... ATGAATGGGATGAACTACATCCGGGAACAAGGGAAA 102305 37 100.0 36 ..................................... GATATTGCTGATGAGATTGGTTGTTCTGAGTCATAT 102232 37 100.0 43 ..................................... TTTCCCAGAATTCCATCTTCAAAGTTTTGCGCCGCGCTTCTTG 102152 37 100.0 34 ..................................... AGACGTGCGTTTCTTTCAACTATTTGACTTAATA 102081 37 100.0 38 ..................................... TGGGGGTTGGGAAGTCATCCAGTGGTACGAACACTGGG 102006 37 100.0 36 ..................................... AGGCATAATCTAGTACCTTTGACTACAAACGATAGT 101933 37 100.0 35 ..................................... CAGCTTCTAGCCCTTCTATTCCCCAAATTCGATTA 101861 37 100.0 37 ..................................... AAGTCCGAAGCATTCCTTGACTTCAGCGAGCTTCCAG 101787 37 100.0 36 ..................................... CCAGCAAAAAAAAACACTAAAGCAAAAATTTTGAAT 101714 37 100.0 34 ..................................... GTATTTTCTGTTGCCGTGGCAGGCGTATAGACGA 101643 37 100.0 34 ..................................... GTACAAGATTGGGTGATGGGTACGAGCAAATAGT 101572 37 97.3 33 ..........T.......................... GCGATCGCGACTTTTTGCCATAATTCTTTACAA 101502 37 100.0 35 ..................................... TCTGATGCGGAAAAAGAAGCAGCTAAAGCACAATT 101430 37 100.0 37 ..................................... AAGGCAGAAAAAGAGCGCATCCGCAACCTAATCACTT 101356 37 100.0 34 ..................................... ATCTCAAGAGCAAAGAAAACAACAGACATGCCAT 101285 37 100.0 34 ..................................... TCAAAACCATCGTTGTAAATGGTGGCTTTAGGAT 101214 37 100.0 36 ..................................... GCGATAATAGAAAAGCTGACAAAATTAAATATTCAA 101141 37 97.3 34 ...........T......................... ACGGGATGATCCATTTTCTTGGGCGGTATCAGGG 101070 37 100.0 34 ..................................... ATCTGTCTGATTCTTGTTGCTGACGTTCCGTCTT 100999 37 100.0 34 ..................................... GAAAAATAAACTTACCATTATTAATACACAAAAA 100928 37 100.0 36 ..................................... AAAAACTTCAACAAATGCCAGCAGAAGCGATCGCGC 100855 37 100.0 37 ..................................... ATTGTCGCTCACGGAAGATGTTGCCGTATCTTCTTCC 100781 37 100.0 36 ..................................... AAGTTTATTTAGAGCAACTCTCTCGTCAATTCCCAG 100708 37 100.0 35 ..................................... GACATTACTATGCCAATTTCGTGAATATCACTAGC 100636 37 100.0 36 ..................................... ACTAATTTAGTTCATAATACCTACATAAAACATATT 100563 37 100.0 36 ..................................... GCTAACTCTTCAACCCAAGCGAGATCTGTTTTCAAG 100490 37 100.0 35 ..................................... AAAACTGGGATTGACGTCACAATTGCTACAGTCAA 100418 37 97.3 0 ...........................A......... | ========== ====== ====== ====== ===================================== =========================================== ================== 115 37 99.9 36 GTTGAAATTTCCTAAAATCCCTATTAGGGATTGAAAC # Left flank : CAAGCGCCGCACTAAAATTCACTCCATACTCAAATCCTATGGACAGTGGGTGCAGTATAGTATTTTTGAATGCAACTTGACAGAAACTCAGTATGCTAAGCTGCGATCGCGCCTTACCAAAGTCATTGTCAAAGGAGATAGCGTCCGGTTCTACTTCCTCTGCGCCTGTTGTCAAGGTAAAGTAGAAAGGATAGGCGGAGAACAACCGCGAGATGAAACCATCTTCTTTGCCTAGTTTATTTTCAGGATTCTGCGCGGATGGGTGGGTGTTTTTCCCAGGCAAAGTCGAAAACAAGCGCAAACACCTTTAATGTAAAGATTTCAGCCCTATTTCCCAGCTTTACCATCCGCGCAATTTCTCAAAACCTTGTAGCATAAGGCTTTTAGCGATATGAAAACAACCAACAATCTCTTGACCAATCTCTGGAAGTGCTATAAACTTAAATTGTCGCGCAACCGCACCTTGAAAACTACATATCGTAAGCTTTTTAGAAGCAGGC # Right flank : CAACCTGTAGTTAAGGTTCCCAAACTAGCTTCAAAAGTTGAAATTTCCTAATAGTTATTGCAAATATGGCGATCACAGGCAGGAGAGCAGTTAATAAAATGAAGGAACAGCCCATGATAAAAGGATTCCAGCATTTATTACCCGATTTTCCATCCACGCAATTTCCCAAAAGTTTGCCATAGCTAGCTTTTAGCTTGTATGATATATCATAAACTCATAAAGCCGCGCCAAAAGTGGCATAGTTTTATCAATTCGCGCAACTGAACCTAAAAAATTAAATACAGTAAGTGTTTCAAGTACTGGCGTTTCGTTTCAATTTCAGCGAATCCCTATTAGGGATTGAAACTACAAACTAGTTACAGAGGGCTTTGGTGGTACATGTTTCAATTTCAGCGAATCCCTATTAGGGATTGAAACTAAACGCGCGGCGCACTGTTGTGCGTTTCACTACTGTTTCAATTTCAGCGAATCCCTATTAGGGATTGAAACACGCAGGATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCCTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 211-1271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000083.1 Iningainema tapete BLCC-T55 NODE_47_length_97108_cov_24.938010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 211 36 97.2 40 .....C.............................. GGTTGTAAGCGATCGCGAAGGTGTGGCGATCGCGCTTAAC 287 36 97.2 38 .....C.............................. CATTCTAAATCACTGCGATCGTTTGTACGCCAGATATC 361 36 100.0 37 .................................... CGGACTTCTCCTTCCATTGTGTTAAAGACCATTTCAC 434 36 97.2 36 ..........T......................... TTGAGTATATTAAAGACTCCAATTGGATTGGATGAC 506 36 100.0 43 .................................... GGTAGCCGCACAGCTATGGGGCGATCGCTATTATCGGTAAAAC 585 36 100.0 36 .................................... TTGTACATATCTAATGCAACATAAAACATATCACTC 657 36 100.0 38 .................................... CCGTAAGTATACTGCCTGGGCATTCCAGCAGCTGCCTA 731 36 100.0 35 .................................... TCACCATGCTGCGATCGTAGTTCCTCCAGCATTGC 802 36 100.0 36 .................................... CGCTCAGGAGGCGTTTTAGCCTCAAATGAGGAATAA 874 36 97.2 37 ....T............................... GAACCCTTTTTATGTAATAAGGATTAGCGTTTCTAAT 947 36 97.2 37 ..T................................. GATCGAGTGATTACCCAACACCAAGCGTTAACTCTGG 1020 36 100.0 40 .................................... TCGCGCCTCTCAATGTATTGGTACTCGTACTGTTGCTAAC 1096 36 100.0 33 .................................... TATATATTTGAAGCTAGCCCTTTTGTAAATGGT 1165 36 94.4 35 .....GA............................. ACCATACCCAGCTTGTACTCTGGATTATGAGAAAC 1236 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 98.7 37 TTCCCAGCGACAGGGTGAAGTCGCTTTGTTGGAAAC # Left flank : AAATAACTACACGTTACAAACTATACCGTTATCAATCTCAACGAGAACGTGTATAATATTTAATATGGTTCTCAACATTTATACTTCCTAGCCTATATGGAATCATAAAATTGCACAGCCTTAGTGGAAGCATAAAATTGCAAAAATGCAAATTTATGATTCAAGTAACAAACTCTACCTTGCCTACTTCTGTCTCGAAAGAAGATAGACT # Right flank : CCCCAGCACTTACCCTCATGCCATTAGGAGTTGTGGCGATCGCTTCTAGTAACCCGATGATGTGGCTTTGTTAGAATCAAATTTTGCATCTACCGCTTGGGAATCAAAAATGACGTGTCAGTGTTAATGCTTCCCAGTTCAGTCTTTAAGATGATAATGGAGGTAATAAGAACATTTACCTTTTACATTAATATTCTGGTTACGGAGTATGGTGAATTTCTAGAAACTGGAGGTGAACATGACTCAAGCGCTACCAAAACTAGTAACATTTGAAGAATTCGTCAAGTGGAAACCTGACGGTGGACGTTATGAACTACACGATGGAGTAATTGTTGAAATGCCACAGCCATTGGGCGATCATGAAGACATTATTGGCTTTTTGGTTGAAGAAATAGTCGCGGAATATAGACGGTTGAGATTTCCTTACTTCATACCCAAAACAGCGCTAGTTAAACCACCCGAAAAAAAATCTGGCTATTCACCAGATGTATTATTGTTAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCCAGCGACAGGGTGAAGTCGCTTTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 7601-6313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAE010000083.1 Iningainema tapete BLCC-T55 NODE_47_length_97108_cov_24.938010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 7600 36 94.4 40 A.............................T..... TCCTAGATTTACATCCAGATGAGCAGAAGTGGCTTTTTCC 7524 36 100.0 34 .................................... GCTAAGTTACAAAAGGCGTCTAGAAAGCGTGATT 7454 36 100.0 40 .................................... GGAGTGATAAAAGCTTTAGTCCTCGGCATCGGGGCAAGTT 7378 36 100.0 38 .................................... TAAACATAGAGATAGATCTTGGGTAAAAATACTTATTA 7304 36 100.0 35 .................................... TCAGGGGAAGATAAGTACAAAGCAGTGTCAGCCTT 7233 36 100.0 39 .................................... TGTAATGGCTACTTTGTGTTCGCACTCTTCTAATTTATC 7158 36 100.0 38 .................................... CATTGCACCTGCGATCGCTACCTTCTCCATATCAGATG 7084 36 100.0 41 .................................... TTTGCCCGCATCTGCAAGGGAATGTTTGCTGCTAAGAAGAA 7007 36 100.0 35 .................................... TTCAAAGCTTGCTGGTAATTAGCAAGCGTCTTAGG 6936 36 100.0 36 .................................... ATAAAACCCTCACGAACGCTGTGAGTGTGGAGATGC 6864 36 100.0 40 .................................... TTCTAGATAAGGGTATTTTTATGGAAGCAAAGATACTTCC 6788 36 100.0 39 .................................... TTATTTACGGAAAGGTGCGGGGGTCAAGGTTCAGTTAGA 6713 36 97.2 37 ..............................G..... CCTACTTGAACCGATTTTACGAACTTATTGATGTCGC 6640 36 94.4 37 ............A.................G..... CTGACAAAGAAGGGTTGTTAGAAATGATTGAGAGGTT 6567 36 97.2 38 ..............................G..... CAGACGTGAAAAACGCTGAAGTAGCAGCTCAAATAAAT 6493 36 94.4 38 .........................T....G..... CGGGAATACTTTATTGAATCAGGTGAAGTGGTGATCAA 6419 36 97.2 35 ...................................A TCTCTTAATATTGCATCTATCTCTGGACGGAATTT 6348 36 97.2 0 ..............................G..... | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.4 38 GTTTCCAACAAAGCGACTTCACCCTGTCGCCGGGAG # Left flank : ACGACTTTCATTTGTCCTATGCCGCCGCCGACACAGATCACGTCCAAGGGCGGGCAATTGTCAAAGGTGGTATCCGGCACAATCATCATTCCGTCATCGGTTTTGATCGGGTCTAGCGTCTTCCAGATGCGGTGTAACTCGACACCGGGAAGCGAACTAAACACTGTCTGGGGTCCGACAATATCCAGTGCCGTCATGCCAGGATAAACTACCAAGCCAATGATGTGCTTTTGTGAGTCAGTCATGAATCCATCTCCTATGGCGATCGCCATGAAATCTATCTTGATACTAGGAGTAACAACCGACCCTGCCCAGTCCTCGATCGAGTACTCTTTTCGCCACGATGACGATTTCCTTGCAGCTTTTATTTAAAGCAATCAACTAGGTGAAAGATGAACATGAGGTGCGATTTGGCGAAACCGACGCTTTGCGATCGCACCTCATACCAAAGATAAGTGAGTATTTTGCAGCCAAGCGGTCAGGAATTTTCTTCGATCAGC # Right flank : GCTGCTTTTGAAAGCCTTACTTACAATAGCATCTAAAACCCATTTGCGAGCTATGGGATTTTTGTCGCTACAATTGCGAGAAATTTTGCTGTAAAAAAGGCTGAAACCATTACAGAGTAATAAATCGAGCGCCTCAACGAAAGAATGGGGGTTTCCTGGATTTTTGATGATAGTCGATTAACATAGTGGGTAATTTAAATATTATTTTTGATTTTGCATTTTGAATTTGCTGGAAAAGTCCCTTTCCAACCGTCTGTTAAAGTATAAATTGATTAAATCTAGTTATGTCGTAATAACCGCGTTGATGACAGAGACTATTTACACCGCTATCACCTTTGCACCTGTTCAGGGTTTCATCGAAAAATCCCGGAAACTGCGAGACTTGTATGGCAGTTCATTTATCCTTTCCTACTTAGCCTATGCGGTATGCGAAGCTGCCGAAAACCAAGATCATCATGTTGTATCGCCAGCAACTATTAATGTTGTGCAAGGCACTCCTA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACAAAGCGACTTCACCCTGTCGCCGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //