Array 1 423302-418910 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSON01000002.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 423301 33 100.0 33 ................................. CCTCGTGGTAATTGGTGCGGACGGTTATGCGAA 423235 33 100.0 34 ................................. TTCGCATCCGATCACGTTGTCGGAGACGGGAAGA 423168 33 100.0 35 ................................. GCGTCGGTGAAGCTCAGGCCGAGGGCCTCACCTCC 423100 33 100.0 34 ................................. GCGGAATCTTCGATCAGGCAGACGTCGGCCTCGT 423033 33 100.0 34 ................................. TCGATGCGATCGGCAAGGGCATCGCAGTCTCCGA 422966 33 100.0 35 ................................. TACAAGATCGCGGAGGAATACCGGGGGCTTGCCTT 422898 33 100.0 33 ................................. ACGGGAAAGGGCGGGTTTAATACAGCGCTCTTC 422832 33 100.0 34 ................................. GACGTTATTATCGGCGAATACACAGCGGAAAAGG 422765 33 100.0 33 ................................. TGAACAAATTCGCGAAGGACATCGCAGTCTATA 422699 33 100.0 34 ................................. AACGCTCCGCTGAGGCTGGGGAGTATCTCCCGAT 422632 33 100.0 33 ................................. CGAAGATCGCGGTTTCCTATGCGAATCCGGGAA 422566 33 100.0 34 ................................. CCCTTGATATCCGTAATCACCGGCGAAGCAGCAT 422499 33 100.0 34 ................................. TTTATCCGAGATGGTATTTTGCAAAGACGAAATA 422432 33 100.0 34 ................................. TGCCGAAAAGGGTGAAAAGCTTCGGAAGATTAAA 422365 33 100.0 33 ................................. TTTTGTGCTTATATTTCCTTCACTGTCCAGGTA 422299 33 100.0 34 ................................. CCATGTATTACTCCTTTTCTAACCGATAATCAAA 422232 33 100.0 34 ................................. ATTCGGAAAACCTCAACAAATTCAAGCGAAATGG 422165 33 100.0 34 ................................. ACGGAAGGTGAAGAGCGTGCTGCCAGGGACGAGG 422098 33 100.0 34 ................................. TCAACGCACTAAAAGAAGCCGGGTATACCACTAC 422031 33 100.0 34 ................................. CTCTACATCAATCTCAATCTTGATCTGTTTTTCC 421964 33 100.0 34 ................................. ACTGAAAGAAACATGCTTTGTACGTTCCAATTCC 421897 33 100.0 33 ................................. CGTGTGCATATGAGAACGATGGAAGAACCGCTC 421831 33 100.0 33 ................................. CAGAGTAAGCGGTACGAAAAAAGGAGTAGTTGG 421765 33 100.0 34 ................................. TATGTGTATGAACCGAAGCTCAGGAAAGTAATTG 421698 33 100.0 33 ................................. ATGGTATCCGCTCTGCTCACATGTATCCGCATA 421632 33 100.0 35 ................................. TGCTGTAATTAGGCATTGAATTGGTTTCCCACTTC 421564 33 100.0 34 ................................. GTTTTGTCACATGATTTTGAAGAAAGGAGGAGCA 421497 33 100.0 35 ................................. CGGTGGAACTACTGAATTAAATACGCTGCTCGGAA 421429 33 100.0 34 ................................. CTTTATTTAGTGCCCGTGTCGCAAATGTGTGACG 421362 33 100.0 33 ................................. ATTGTTAGCGGTTCCATTATTTGCGCACCAATG 421296 33 100.0 33 ................................. AAATTATCACTGTCAATAATAACGCGGTTTCCC 421230 33 100.0 34 ................................. TGCCAATAGATACAACGCCCCATTTATCTTCCAA 421163 33 100.0 33 ................................. CTCAAAATTAAAACTATACATTGACACATAATC 421097 33 100.0 34 ................................. CGGTTACATCACTCCATGCCGGTTTATGCCCTTC 421030 33 100.0 35 ................................. CCATCATATTACCGATATTGACCATATCCTGGGAA 420962 33 100.0 34 ................................. CCGCTATGCTTTTATACGGGGTAGCTTCCCATGC 420895 33 100.0 35 ................................. ATATTCTGCTTTTGACTGCTCATACTTTGTCTTGT 420827 33 100.0 33 ................................. ACGCCAGTGCAGTAGGGCGTGACCGAGTTCATG 420761 33 100.0 34 ................................. CGTGATACTTAATACCTCTGCAATGTCCCGCAAT 420694 33 100.0 35 ................................. TCCAAAAAAATACTCTCTATTAGTTACCGCTGCCG 420626 33 100.0 34 ................................. TCCACCTTGATCTTTTTAGACTCCACAGCCTCAA 420559 33 100.0 34 ................................. TGACCAACTATGGAGGCGAGGATTTAAATACCTT 420492 33 100.0 35 ................................. TGTTTGACGATACCGAAGAAGATAGTTCGCAATTT 420424 33 100.0 33 ................................. TTAATCAGTTTTACCGCAACATGGTAACTCTTG 420358 33 100.0 34 ................................. GCCGGATATGTCCCGTCTGGCCTGCGATACCACC 420291 33 97.0 35 ........................T........ CAGCGCAAGAGCTCAACCATAACCATATCCATCGT 420223 33 100.0 35 ................................. ATTGAACCATAGACGGCATATACGCAGGTCAAAGA 420155 33 100.0 35 ................................. GTATACTGTCCGCAGTAGCCTTTCTCCCGATTCTC 420087 33 100.0 35 ................................. TCTACACCCAGGTTAAAAATTTTATTATCTGCGAT 420019 33 100.0 34 ................................. AATCCAAACCGTAAGCTACGGCGCTCTTCCGCCA 419952 33 100.0 33 ................................. AAAAAGCTTAGCTAGTATAATTCTACCTTTAGG 419886 33 100.0 33 ................................. CGCTACGCTCTGAAAGAACGGCACGACTGTACC 419820 33 100.0 34 ................................. CATACAGGAAATAGCAAGTGTAAATGCTCAGATG 419753 33 100.0 33 ................................. ATTATCATTACGCAGAGGATAAAGGCAAATAAA 419687 33 100.0 36 ................................. CCTTCTGCTATAATCATGTTATCAGCCCCGCCAGGC 419618 33 100.0 35 ................................. ATCTTTAAAGCAGTACTTTTCCGCAATTTGATATG 419550 33 100.0 34 ................................. AGTATAGCCGCCTTGCCTTTAAGCTGTATAATCT 419483 33 100.0 34 ................................. CCTGATAGCAACGTGCCTTTAAATCGTAGAACCG 419416 33 100.0 35 ................................. ATTGATGCCCATCCCCGTTTTCCTCCCTCCTTTAA 419348 33 100.0 34 ................................. ATCAGCCGCCAGGTATCCGGGGCTGACGGGAGAT 419281 33 100.0 35 ................................. CGTCTTATACTGTACTTACAGGTCCATGCCCGGAC 419213 33 100.0 35 ................................. TTCCAGATGTCATGATACACTTTGATAAGTGGGTT 419145 33 100.0 34 ................................. GTTAAGCCATACGGCAAAGTCAAAGGATTTTTCG 419078 33 100.0 35 ................................. TCGCTGGTACTTAATCATGGCATCGTAGTATTCAG 419010 33 81.8 35 ...CT...C......AT.A.............. ACACCCGCAGCCATGAACATCTCAGTTTTGTAGAT 418942 33 75.8 0 ..T.....C....C....A.T...C...T...A | ========== ====== ====== ====== ================================= ==================================== ================== 66 33 99.3 34 GTCTCCGCTAGCGATGGCGGAGTGGATTGAAAT # Left flank : TCCGCCATTTTTCTGGAAGTAGGAGGCGTTTCTCTATGCTGGTGCTGATCACCTATGATGTAAATACCGAGACCGCTGCGGGAAAGACGAGATTGCGTAAGGTCGCAAAGCAATGCGTAAACTATGGTACCAGGGTACAAAATTCGGTATTCGAATGTATTGTGGATAACGCCCAGTGTGTGATGTTAAAAGCGGCGTTGAAGGACCTGATTGATGTTCGTGTTGACAGCTTGAGGTTTTATTATCTGGGCAACAAACATGACACGAAGGTGGAACATTTTGGTGTCGAAAAAGGTGTAAATGTAGAAAAACCTCTCATTTTCTAGCCTGTGAATTACGGTGCGAACCAGAAGTGATCATAAAATCCCTGGGAGGTTCGCACCGAGAATTTTGCGGTTATGGAGGGGAAATGGGAGAATTGGATGAGTTGATTCGATGAAATGTGTGCAAATTGCATATGATTATTGCTGATTGTATGGTGTAATATGTGCGAGTTTGCT # Right flank : TCGTAAGATTATTGCAAATATGAACCGTTGAGGGGACTACATCAGTAATGGCAGAGTGTATTAGATTTACGCAAAAAATCAGTTCTCAGACGATAAAAGTAAATAAATAGATTGAGGAGAGCAAAGAGTGAAGTATATTTTTATACATGGACTTGGACAGGGGCCAGATAGTTGGAATAAAACAGTTTCCTGCATGAGAGAGCAGGAAGAGATTCAATGTCTGAACGTATTTGCATTTAAAGAGGGATCAGAGATTTCATACAGAAAAGTATATAAGGCTTTTTCGGCGTACTGTGAGTCTATAAAAACGGAGTTTGGGCTTTGTGGTCTTTCTTTGGGCGCTGTGATTGCGTTAAATTATGTGGTGGAGCATCCGGGAAGAGTAAAGTCACTGGTCTTGATAGGGGGACAGTGCGTGATGCCGAAGGGGCTTTTAAGATTGCAGAATATGATATTTCAGTTGATGCCGAATGGGATTTTTAAGAAAATGGGGATAGGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCTAGCGATGGCGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 433580-431099 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSON01000002.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 433579 32 100.0 34 ................................ TCCCCGGTTCTCAAGTTAATTGACAACGCGGAGA 433513 32 100.0 35 ................................ ATCGAATTTGCCAGCATTTTTATCGAGGAAACCTC 433446 32 100.0 35 ................................ TCGTCCTGTTCATCGTTATGATCCCACAATCTTTT 433379 32 100.0 34 ................................ AATTCGGCGGTGCCGGTCCCGCGTTGTAGGTCTT 433313 32 100.0 33 ................................ TAATGAGTTTTTTGCCTCTTCGAGCCCGTCGCT 433248 32 100.0 34 ................................ GCTAAAACAAAGTTTTCCTCGGTGATTTCTGCCG 433182 32 100.0 33 ................................ CAGAGTAAGCGGTACGAAAAAAGGAGTAGTTGG 433117 32 100.0 34 ................................ TTCTGGCACCCGGATTATGACGAGGAGGATTCTT 433051 32 100.0 34 ................................ CTTCTGGTTCCGGCGCTGAATCGCTCGGTCCCTC 432985 32 100.0 33 ................................ TTCTTGAGCATATGGTAATTGGTGAGCAGCAAC 432920 32 100.0 33 ................................ TTGTTCCCCCGAGAGTATGGCCGCCCCTCTTTG 432855 32 100.0 33 ................................ ATTTACGAGAAAGTCATAATAAGGTTTTATTAA 432790 32 100.0 36 ................................ AAGCCAGATGCCATGGCCTTGCGGGGCCGAAGCCAG 432722 32 100.0 36 ................................ TTATTTACTTTTTTTGGAAGGGACTCCTTTTTGACC 432654 32 100.0 36 ................................ CGGACTGGCAGTAAAACTGTCTGAAGACGCATCAGT 432586 32 100.0 35 ................................ ATAAAGTATCTTCCTTCATCATGAAAAAAGTATCA 432519 32 100.0 34 ................................ CTCATGATCCTGCTCCTTTCAGTCGTGTGGCTCC 432453 32 100.0 35 ................................ CTCCAACCGCCCAGCTTTTAGCTGTCGTAGCGCTT 432386 32 100.0 33 ................................ GTTTGTGATCCTGCTGGCGGAGTAGGAACATAG 432321 32 100.0 35 ................................ CGGAATATAATCGTCTTTTCCACACTTGCGTGGAA 432254 32 100.0 34 ................................ TGGTCTGAACACTTTCTCGAATGGAAGAAAATCA 432188 32 100.0 35 ................................ CGTCAAAGTAAAAACAACGGATCAGATGCCCCGTG 432121 32 100.0 34 ................................ AGGAGATGGAGCAGAACGGAGATCCGGGCGATAA 432055 32 100.0 33 ................................ CGGAACACTGTCACCGGCCTCGTCCGTCAGCCA 431990 32 100.0 34 ................................ CTCCGGCAGCACCGGAAACATTAATATGCATGGT 431924 32 100.0 35 ................................ TGAATATTGAGTACTTTGGTCTTTTCCCATGTATG 431857 32 100.0 33 ................................ GTATTACAAAGTATCTGGCAGCGCGCTGTATAT 431792 32 100.0 35 ................................ ACTTTAAGCAAAACTTTAAGCATTTTTTAATAATG 431725 32 100.0 34 ................................ GCTTGTATATCTCTAAAGTTAGATACTTTCTTCT 431659 32 100.0 34 ................................ AGCCTGGACAACTTCATAAGGGAAAAAGGTGGAA 431593 32 100.0 33 ................................ TTCCAGTTTATCCGCTTCGCTGTCCACATCAGT 431528 32 100.0 34 ................................ CTTCACCGTCTAAATCATTCACTGTCTCAATCCT 431462 32 100.0 34 ................................ CCACAACGCCCAGCACCGCCCCAATAACACCGCA 431396 32 100.0 35 ................................ TTTGCAGTCAGATCCTGATCCTCGATAATGTCCTC 431329 32 100.0 35 ................................ AGGAGGTAGAGGCCGCGATTATTCAGCGGGGCGTC 431262 32 100.0 35 ................................ TACGAATGCCGGGCGCATACCCGGCAGGATTACAA 431195 32 100.0 33 ................................ CCGGATACCGCGCCATCTGAATGGGGAGATATC 431130 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 100.0 34 GTCACCACTGATGCAGTGGTGTGGATTGAAAT # Left flank : AGAAGGATGAGCGATTTAACAGAGCGATATGGGGGGTATGTGGATTTTGCGGAAATCGAAACATTGCAGTACCTCTCCGAAATGGTGCAGGAAGTATCGTCTGGAGTATATTTAAATAATATAGACAGATATTCAACCAGAAGAAATATGAAAATGGATTTAAGCGGATTAATGGGAGCTATGACGTTCCAAGGAGAGTTATCAGTATTCACTCCATGGCTGAATGCGGCCTCTGTCTTACATATAGGCAGAAATGTTACATTTGGATGCGGAAAAATTGATGTGGTGTTTGGAAATATAGAATAATCTAAAAAAACTAATAAATTATCGGGTGCGAACGTCAAGTGATCGTGAAAATGCCTGGAGGTTCGCACCTGAAAATGAAGAAATCGGAGATGAAATTTAATTGTTTTATTAGAAATAAAGTGTTAAAATAGAAATATAGACAATTTTTGGTTAGTTTGTGATAGATTGTGTTGCTGAAATTGTGCAGATTTGCT # Right flank : TCTCATTGTTGACAATTTGAATCACCTTCCCTCGAGGCCACCACTGATTCAGTAGCACAAATATATATACTCTTAAATAAGACAGTAGATATAGTCATATATTCTGGCTGTCGTATCAGTGTAAAAAGGAGGTATTTCATGTTCCTTGCCCACATAAGCCAAGATCAAACTCGAGAGCAAACGATCGCTGCCCACTGTCATGGTACAGCACATCTTGCCGGTGATTTTGCATCTTCTTTCAAGTGTAAGGAATGGGGGTACGGTTGTGGCCTGATCCATGATATCGGAAAATATTCGGAAAAGTTTCAAGAACGTCTTCATGGAGGAAGCATCACGGACCATGCGACGGCAGGCGCCCAGGAATTATATAAAAGAAAAAATATCTATGCAGCCTACTGCATTTCCGGCCATCATTCGGGATTGCTGAATGGCGGGACTTGTGCCGATTGTGCAGGAGAAGCCACTTTTATGGGAAGGATGAAAAAGGGGCTGGAAGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACTGATGCAGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 75265-75699 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSON01000009.1 Hungatella hathewayi strain TM09-12 TM09-12.Scaf9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 75265 33 97.0 34 ......................C.......... TCCTGCTGCTTCTGGCCTCCACAGGGGAGACGCT 75332 33 97.0 34 ......................C.......... CGCCGGAGAAAGAAGGAAGTATATGAAAAAATAT 75399 33 100.0 34 ................................. TCATTATGTCCTGTTCCGTCAATCCCAATACATA 75466 33 100.0 34 ................................. TCCAATCTTCTCAGCCCATGTATACGTCTTAGTC 75533 33 97.0 34 ..................A.............. CCCAGCTGATGCCGTATTCGTAAAGTTACCAGCT 75600 33 93.9 34 ..................T....A......... CTCTGAAGGAAGTGCAAATCATACACTTTCTCTA 75667 33 69.7 0 ...C.T......A.T..CCA.A..TC....... | ========== ====== ====== ====== ================================= ================================== ================== 7 33 93.5 34 GTCACCTTCTGTGAGGAAGGTGTGGATTGAAAT # Left flank : ACGATAAGGAGTACAGAAAGGCGTTGAACATCTGCGGATCAAAGTCCGGGCGCGACTGCGACAAGGTGAAGGAGGCAGGCCTGACCCCCTGTTTTATTGACGGTACCACAGCATTTGAGGAAGCGAATATGATTTTTGTCCTGCGGAAACTGTACTCCGATCCCATGCCAGCTGAAAATTTCCTGGATAAGGAAATTGATCAGAAATGTTATCCGAATAAAGACTATCATACGATGTATGTGTCGGAGATTGTGAAAGTGCTTGTGGCAGATTGCCAGGCTGACTAATTGTGAAGGGATTTCGTCTTAGATAAAAGTCAGATAAGAGGGTAGTAAGCTGGTGCGAATCTGAAGTAAGCATGAAAATACCGGGGGATTCGCACCGGGAAAATGAGAGAATAGGTAGAAGAAGAAAGATCGCTATTGATTTTGTTGGAGAATATTGTACAATATAGTTAATGATAGGGGGAGGGAGTGGGGGAGGTGTTGTGGAGAATTGCG # Right flank : TAACCATATCCTCCCTTCCAACCTCTCATCACAACAAAAAGAACCTTCAGAAAGCAAATGCTTCTAAAGGTTCTCTTTTTCTGATAACAATATCCTCTCTAATCCCCAAGATAATAAACCGCCGTAAAATACCCCTTACTATTATAATAAAGCGCATTCCCAAGTACGCTGCTGTCAGCCAGCGCCTCCGTCTCCCCGCCGCGCTCCGATGCACCAGCACAGATCTCAGTCTGAGTTTTCGATGCTTCTGCCAGGCTGGTATAAGCGCCTGTCACGGCTCCTTTCAGAATGTAAATGTCCCCTTCATATACCGTCTTCATCACAGTGTCTGCGCTGGTCTGCCACAAAGTATAGGTTCCATTTTCCAGATCTGCGATGACTCCTGTTTCACTGCCTTGTGAGGAAGGCGTTGTTCCCTTGTCATACATCAGATAGCCGTATGAATTCGAGTCCCCTGCGTTGGGATCCAGGGAAATTAGTTGGCTTTCGCCGGTCAGCGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:0, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTTCTGTGAGGAAGGTGTGGATTGAAAT # Alternate repeat : GTCACCTTCTGTGAGGAAGGTGCGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //