Array 1 710404-711102 **** Predicted by CRISPRDetect 2.4 *** >NZ_UISU01000001.1 Klebsiella pneumoniae strain EuSCAPE_ES124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 710404 28 96.4 33 ..........T................. CTGCGTTAATACCGCCGTTTGTCTGATTCAGAT 710465 28 96.4 33 ..........T................. TTGATAGGATTGATGAAGGAAAAAACCAAAAGA 710526 28 96.4 33 ..........T................. CCTCTGCAGGCTATCGACGTCTCTAAAAACGTT 710587 28 100.0 33 ............................ CTGGTCAAGTTGGTTTCCTGGCGTGGCAGCGTT 710648 28 100.0 33 ............................ TATTTATTATCAGGATATGCCTGTGTGGGGGGC 710709 28 100.0 33 ............................ TCCAGCGAACAATGGCGGTGGATATGGCGGCGG 710770 28 100.0 33 ............................ CCGATATCCGCGAAAACGGGCTTGACGTGGTAC 710831 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 710892 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 710953 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 711014 28 92.9 33 ..............T........A.... TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 711075 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.6 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTATGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCATATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 719856-721592 **** Predicted by CRISPRDetect 2.4 *** >NZ_UISU01000001.1 Klebsiella pneumoniae strain EuSCAPE_ES124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 719856 28 100.0 33 ............................ CGTTTAGTTTTTTGATGGAGGGCGGCGTTGTTC 719917 28 100.0 33 ............................ TTGCGTGCCTTGCGTTAATACAGACATGTTTTG 719978 28 100.0 33 ............................ TGAGTGCATATTATGTTTATCGGACCCGGCGGG 720039 28 100.0 33 ............................ CGATGTCCAGGTCGGCGTCCGGATGAAAGGCCA 720100 28 100.0 33 ............................ CGGGGATCGTTATGTCTTCTCTTTCTGGTTAGA 720161 28 100.0 33 ............................ TCCGCCTCTTGCTTCCGACCTGGTAAAAGCGAT 720222 28 100.0 33 ............................ CCGGATTCGATGAAATTTCCGGTAACTCAATGA 720283 28 100.0 33 ............................ TTTCACGCTGCCGCTGATGGCGTGGCTGTGGGT 720344 28 100.0 33 ............................ CGGATCCCACGCGGGCTGTATTCTCTACATCGG 720405 28 100.0 33 ............................ CTTCACTTCCTCGGCACGTCAGCCGCGACAGCG 720466 28 100.0 33 ............................ CAGGTCGATATGCAGAGAAAGGTTGCATGGGTA 720527 28 100.0 33 ............................ CATCATTGCCCGCGCGGCCCTCAGGCACGAGGG 720588 28 100.0 33 ............................ CAGCACAGTGGGAAAGCGACATTCCGTTAATTA 720649 28 100.0 33 ............................ CAACCAACCGACGACGGACCTCAACGCCGCGCA 720710 28 100.0 33 ............................ CGCAACTTTAGCGGCGCTGTATTCTGCGTCGGT 720771 28 100.0 33 ............................ TACCGGATCAAGTTCTGGCAGGTCGATGACGAC 720832 28 100.0 33 ............................ CGAGGGTTTGAGCGAAAGAGCGGAGCTTTTTAC 720893 28 100.0 33 ............................ CCCCCAATAAGGCAGCTGATTTCTTCGGCGTTT 720954 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 721015 28 100.0 33 ............................ TATGCTTTCTGCTGCTACTGACGCAATTGATCC 721076 28 100.0 33 ............................ CAGCCGATACCCCGGCGGCGTCCGCGTCCTTGC 721137 28 100.0 34 ............................ CAAAACGGCGTCATTGAGGTTGATTGCGGCTGTG G [721159] 721200 28 100.0 33 ............................ TGGATCGTCGGCAGCTCACTGCTGGATATTGCG 721261 28 100.0 33 ............................ CAATTACCGCGACTGCGGGAATGCTCTGAAGAT 721322 28 100.0 33 ............................ CAGGCCTGACGGCTCTTTCGGCAGGGCGTCGAT 721383 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 721444 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 721505 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 721566 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGGCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACTGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //