Array 1 126-2669 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SSOD01000012.1 Azoarcus rhizosphaerae strain CC-YHH848 contig12, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== =============================== ==================
126 36 100.0 30 .................................... GGCAGTTCTCCAGCAGCACGACCTCGCCCG
192 36 100.0 30 .................................... CGGCACGTCATCGGGCGTGTACTCGTCCGG
258 36 100.0 30 .................................... GCAGGGTTCGCGTCGGCCCTCCGGCGGGCG
324 36 100.0 30 .................................... CGCGCGCCCGCGGGAAGGCGCGGGGCCAGC
390 36 100.0 30 .................................... CCGCCCACAGCAGCTACCTCAAACGCTAGG
456 36 100.0 30 .................................... TGGACAGGCAGGGACCGTCGAGCGCGATGG
522 36 100.0 29 .................................... GGCGGGCGATGGGAAACGGTTGAGCGCGT
587 36 100.0 30 .................................... CGTAGGTGATGCACTGGCGCTCATACTCGG
653 36 100.0 30 .................................... AGTGTAGCGGCCGGCGCTCTTCGCCAGCTC
719 36 100.0 30 .................................... ATAAAACTCGGCCTGCGTCATCTCGCGGAT
785 36 100.0 30 .................................... TTGTCGGGCGTCATGGCTTAATGCTTCGTG
851 36 100.0 30 .................................... TTCGACGTGAAAAGCCATTTAAAGAATTCG
917 36 100.0 30 .................................... TGCGACAGACGGGGCACAACATGCGCACCT
983 36 100.0 30 .................................... TCTGTGGATGCAGTAAGCCATTGCTCCCTG
1049 36 100.0 30 .................................... AGCTCGAAGAGCATCCCCACGATTCTCGCT
1115 36 100.0 30 .................................... CTGTAAGGCTGGATTTCGCACGCGGCAGAA
1181 36 100.0 30 .................................... TTCCTGCCTTCCGTTGCGCTCGCCGCGAAC
1247 36 100.0 30 .................................... GGTTGGTGCGCGACAGCTCAAGCACGTCGA
1313 36 100.0 30 .................................... CTTCATCGCTCAGCTTCGCCAGCGTGAGCG
1379 36 100.0 30 .................................... TCGAAATCATCCAGGCCGGTGAAGAAGGCG
1445 36 100.0 30 .................................... CATATCACGCATGTAGGCCAGCGTCTTCGA
1511 36 100.0 30 .................................... CCCGGAGGACAACCAGCTCATTTGGTTGTA
1577 36 100.0 30 .................................... GCGCAAGTACAGCAGCGTCGATAGCGCCAT
1643 36 100.0 30 .................................... GGTGTGCTTCAAGCCCCTGGTGCTGGGCGC
1709 36 100.0 30 .................................... TTCGCGCAGCGCGTGCGCCTGGTGGGTACG
1775 36 100.0 30 .................................... GTGCTCGCAGAGGTGACTCCCCTGCGCTTC
1841 36 100.0 30 .................................... TTGAGCATTTCACACCCTCCTACCGAAGAA
1907 36 100.0 30 .................................... GTCGTGCTGATAGCGAACAAATCCCGCCTC
1973 36 100.0 30 .................................... AACAACTGGCCGAGGTGTCTAAATGATTCC
2039 36 100.0 30 .................................... ATCGTGCTGATAGCGAACAAATCCCGCCTC
2105 36 100.0 30 .................................... ACGTCCGCATACAGTTCGCGGTTGCTGCTG
2171 36 100.0 30 .................................... GTCTTCGGGGCCGTAGAACGCGGCGCTGCG
2237 36 100.0 30 .................................... CGACGCTGTTCACGGTGACGCGGCTGGCGG
2303 36 100.0 30 .................................... CCTGCTCGACCAGGCCAACGATGACCTGCT
2369 36 100.0 31 .................................... CGCCGCCCTTCTGGCTTGCTATGACGATGGT
2436 36 100.0 30 .................................... GTTCCTGGTGCGCTTCCTCGTTGGCCTCGG
2502 36 100.0 30 .................................... CTTGCGCAGGGTGTAGCCAAAGGCCGGGTC
2568 36 100.0 30 .................................... GGCGTACAGGCGGGCGATGACGTCTTCCGG
2634 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== =============================== ==================
39 36 100.0 30 AGTGTAGCTATCCGGGGTGAGAGAGGGAGCTACAAC
# Left flank : GCGTACTCCAACTCGGAAAAGCTCGATTGCATCGGCCCACGTCCTGTCATTCGAACACAGCCTCCATTATCTCAAGCGCATCTCTGTGCCGGGGCGCCGGCGGAGGAATAAATCAGCGATTCCCTA
# Right flank : CCTGCCGGAGAGGCCATGTCCTCCGCGAAGAACGTGTGTATCTGCGGGGGGGAGGGAAAGCCCCTACCCTACCCTACCCTACCCCGCCTCGCATGCCACACCCACCGGCATCTCCAGTTCCCACACTTCACGCAGCACCTCCATCAGTGCGCCGATGACCAGATCGCCGGCGCGTTCGCGCAGAACGGCGAACTGCAGGGGCACGGAAGGTAGCGGCACGGGGAGTTCGTAGGCGCTGTCGGCATCGCCGCCGATGACGCCGGCGCGCACGATGCCCAGGCCGACCCCAGCACGCACCAGTTCGATCATTGCGTCTTCCTGGTCGGCGAGCAGCGTGCGCATGGGTTCGCAGCCGTTGGCATGGAAGAGCGCGTGCATGACCTTGAAATAGGCGCAGTCGGGCGAGGTGAATACCCAGGGCAGGCGTGCCAGTCTGGCGATGTCGACATCGGTGATGCGGGCCCTCATCGCCTTGGGTGCGGCGACCACCAGGGGTTCGT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : AGTGTAGCTATCCGGGGTGAGAGAGGGAGCTACAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: F [-5.60,-3.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [0.74,0 Confidence: HIGH]
# Array family : NA
//
Array 1 75527-73274 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SSOD01000013.1 Azoarcus rhizosphaerae strain CC-YHH848 contig13, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ======================================================================================================================================================= ==================
75526 28 100.0 32 ............................ ATTCGGGCAGGCGCCCGACGTAGCCGATGAAC
75466 28 100.0 32 ............................ TGACTATCGGCCCGCCCCGTCTGTCCCTGTCG
75406 28 100.0 32 ............................ ACCCGGGAAACGAGGAAGAACGCGGCCAGCCA
75346 28 100.0 32 ............................ GCCCGCAAGGTGTTCGCCACCAAGGGCGACCC
75286 28 100.0 32 ............................ TCCGACAGCAGGTAGTGGACGCGAGTTTCGTC
75226 28 100.0 32 ............................ TGAGCGAGGTCTTCGCATGATCGAGACCACCC
75166 28 100.0 32 ............................ GAGTGCAGCGCCGGTCCGGGATCATGGGGATT
75106 28 100.0 32 ............................ ATCCCGGTGCGTCGCGGTGGCGGACTCCAGAT
75046 28 100.0 32 ............................ CGGAGAAAGATTGCATCTGTTACTACGGCTTC
74986 28 100.0 32 ............................ AAGAAGGCTGCTTCGGCCCCGTCCTCGTAGCC
74926 28 100.0 33 ............................ ATTAGCGGATTAACGCTGTTGCCGCACATCCGC
74865 28 100.0 33 ............................ AAGCCAGAAGAGTGACCGCCAGAGTGAAGAACT
74804 28 100.0 32 ............................ GCCGTCCGCGTCCAGATCGGAGACGCCCTCGA
74744 28 100.0 32 ............................ TCGCCACTGGCGGCATCGTCATCGCCCCCAAG
74684 28 100.0 33 ............................ TCTACCTGGGCGACTGCATCGAGGGTATGCAGC
74623 28 100.0 32 ............................ TCGATCCTGGCCAGCGGGGGCCCCTGTCATAA
74563 28 100.0 32 ............................ ATGACGATAGCGGCCCGGTATATCTAGAAGAC
74503 28 100.0 32 ............................ ACCAGGTGCTCGGTCTCAATGAGCGCCGGCAG
74443 28 100.0 32 ............................ CGTCGGCCAGGCCCTGCGCAAGAAGTACAGGC
74383 28 100.0 32 ............................ ACTAGCCGCCGCCAGTACCCGGCATCTCCGCA
74323 28 100.0 33 ............................ TCGCCGGTGGCCCGGCTGTTGCGCACCACGCCC
74262 28 100.0 32 ............................ AGAACGAGACCGGTTCGGCATCGTTGATCGCG
74202 28 100.0 32 ............................ TTGCCCGTGTTGTGCGCGTAGCCAGCGGCGAT
74142 28 100.0 32 ............................ ACTCAGTTTGATCTGGGCGGTGGGGCGAAACT
74082 28 100.0 32 ............................ ACATCCTGACGCTTGCGGCCGGCGGGGAAAGC
74022 28 100.0 32 ............................ GGGGCGCCACAAGCGGGGTGATGTCCTTGCCG
73962 28 100.0 32 ............................ CGCCGGACACCCAAGCCGCATCGCTGTGGTTG
73902 28 100.0 32 ............................ CGGTGGAGAAGGCCCGCCGCACCGCCGTGCGC
73842 28 100.0 32 ............................ ATCCCCGGCCGGCGCATCCGCGGCTACCACAT
73782 28 96.4 32 ....................T....... GAGAAGGTCGGCAAGAGCCGCGCCTACATCTA
73722 28 100.0 32 ............................ GCCGAAGTCATCGGCCGGCGGCGCGTTGAAGC
73662 28 100.0 151 ............................ TCTCGAACACCTGCCGCTTCGGCGGCCAGACGGATCACTGCCTGTACGGCAGTGATCAATGCCAGCTTCAGCGCCACCGTGCGCTGACATTTCTGAGCTGCCTGTACGGTAGTGATCCCGGTCGTGCTCGATGCTGGCCGGCGTGATGCTT
73483 27 85.7 32 TC.G..........-............. TGCCTAACTGCCTGGATACCTTGATTTGCTCC T,G [73473,73479]
73422 28 100.0 32 ............................ GTAGAGCCAGCCCTGCCACATGGGGCCCCTGT
73362 28 100.0 33 ............................ GGCCTGCTGCAGCAGCTCGCGCTGATCACCTCC
73301 28 96.4 0 ........................A... |
========== ====== ====== ====== ============================ ======================================================================================================================================================= ==================
36 28 99.4 36 GATCACTGCCGTACAGGCAGCTCAGAAA
# Left flank : AGAGCCTGGAGCGCCTGATGCGGATTGCCTGGCTGCAAGGCATGCGGGATCACATCGCAGTCACGACACTTGCCCCGGTGCCCGAAGAGGTTGCACATCGTATCGTGCGTAGGGTCCAAGCAAAGAGCAACCCTGAACGCATACGGCGTCGGTTGATGGCACGCAAGCATATGGGGGCCGATGAAGCGCGAGCGACGATCCCCGACTGCGCCGCACAACGGCTTGATCTTCCATACGTCGAAATTGCCAGCCGCACGACCGGCCAGCGCTTCAAGCTTTTCATAGAGCATCAGGCACTGCGACAGACTGCCGTACGCGGTCCGTTCGGAACGTATGGCCTTAGTGCCATTGCCACCGTACCGTGGTTTTGACCCTTTTTTCGGTGGGTTCTTTAAGTACTAAAAAAACAAAGGGTTATGAGAATGGTGGTTAGTTGGGGCAGCGGGCGCATTTGCGCCCGTTTTCCTTAGCAATTAAGGTATTAGCGGCTCGAATGTCTA
# Right flank : ATCAGCGTGACCACATCGGCGAGCAAGATGGAAGCACTCACCGCCAGTCAAATGGAACTGATAACGTGTTGGCGACTTGGTCTTCCCGGCAGCCTGTTGCACGTCTCGTGTGCTGGAACTGTCTATCCAGACCAGAGTCTTTCAGCTTTGTGGGACTTGTTCTTCCTGTTGATCGATGTGCCACCCAGGAGCCTGTAATGAAGAAGTCAAAACTCAAACCCCGCAACCCCCTCGTGGCGCAGGTGCGTCGGCGTGGCGGTGGCGGGGTGCATGAAGAATCGTTCAAGGCGCGGCGCAGCCGCGAGAAGGCGGCGCTGCGGCGCGAGGTGATGGGTGGGCGCGGCGGGGAAGGGCGGGAGGCCGGACGAAAGCGGATCGCGGTGGTGGCGGTGGGCTTTCGTCCGGTTTTCCGTTCTGCGGTTCAGGAGCCGTACTTGACGGTGCAGCCGTAGGCGCGGGTGACCGGGTTGGGGACGGGCTGGCCGGCCTGCAGGGCGGTG
# Questionable array : NO Score: 5.93
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GATCACTGCCGTACAGGCAGCTCAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37
# Reference repeat match prediction: R [matched CTTCACTGCCGTACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//